BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19430.1
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480529 jgi|Araly1|480529|fgenesh2_kg.3__3230__AT2G19430.1 1988 0.0
> Ahg480529 jgi|Araly1|480529|fgenesh2_kg.3__3230__AT2G19430.1
Length=1307
Score = 1988 bits (1076), Expect = 0.0
Identities = 1248/1328 (94%), Gaps = 24/1328 (2%)
Strand=Plus/Plus
Query 25 AGTATCACCGGGAA-TTGCAAAGAAGCAGAGGACCATGTACGGAGACGCTACAAACTGGA 83
||| ||||| |||| |||||||||||||||||| |||||||||| ||| || |||||||
Sbjct 1 AGTTTCACC-GGAAGTTGCAAAGAAGCAGAGGAATATGTACGGAGGCGCCACTAACTGGA 59
Query 84 ATGAAGATGAGTATAGAGAATCAATTTTGAAGGAGCGAGAGATAGAGACACGCACCGTCT 143
| ||||||||||||||||||||||| |||||||||||||||||| | ||||| ||||| |
Sbjct 60 ACGAAGATGAGTATAGAGAATCAATATTGAAGGAGCGAGAGATACAAACACGTACCGTAT 119
Query 144 TCAGAACCGCCTGGGCTCCTCCGGCGAGAATCTCTAATCCAGACGCATTTGTTGTAGCCT 203
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 120 TCAGAACCGCCTGGGCTCCTCCGGAGAGAATCTCTAATCCAGACGCATTTGTTGTCGCTT 179
Query 204 CCAGCGATGGAACTTTAGCTTTCCATTCACTGAACTCGCTTGTGTCTCAATCGGCGAGTT 263
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 CCAGCGATGGAACTTTAGCTTTCCATTCTCTGAACTCGCTTGTGTCTCAATCGGCGAGTT 239
Query 264 TTGGCTACTCGAAAGGTCAAGATGTTATGGTGGCTGAACCTGAGAGAGTGGTTAGGGCAC 323
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 240 TTGGCTACTCGAAAGGTCAGGATGTTATGGTGGCTGAGCCTGAGAGAGTGGTTAGGGCTC 299
Query 324 ACGAAGGTCCTGCTTATGATGTTAAGTTCTATGGTGAAGACGAAGATGCTTTGCTACTTA 383
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGATGGCCCTGCTTATGATGTTAAGTTCTATGGTGAAGACGAAGATGCTTTGCTACTTA 359
Query 384 GTTGTGGTGATGATGGTAGAGTTAGGGGATGGAAATGGAGAGAATTTGCTGAATCAGATG 443
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 360 GTTGTGGTGATGATGGTAGAGTTTGGGGATGGAAATGGAGAGAATTTGCTGAATCAGA-G 418
Query 444 -TGTCTCTTCATTTGAAAGAGAATCATCTGAAGCCATTGCTTGAACTGATTAATCCACAA 502
|||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||
Sbjct 419 ATGTCTCTTCATTTGCAAGAGAATCATGTGAAGCCATTGCTTGAATTGACTAATCCACAA 478
Query 503 CACAAAGGTCCTTGGGGTGCGCTTTCACCGATGCCTGAGATCAATGCCATGTCTGTTGAT 562
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 CACAAAGGTCCTTGGGGTGCTCTTTCACCGATGCCTGAGATCAATGCCATGTCTGTTGAT 538
Query 563 CCTCAGTCAGGAAGTGTATTTACAGCAGCTGGTGATTCTTGCGCATATTGTTGGGACGTG 622
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 CCTCAGTCAGGAAGTGTATTTACGGCAGCTGGTGATTCTTGCGCATATTGTTGGGACGTG 598
Query 623 GAGAGTGGTAAGATTAAAATGACCTTTAAAGGTCATTCAGACTATTTGCATACTGTAGTT 682
||||||||||| || ||||||||||| || || |||||||||||||||||||||||||||
Sbjct 599 GAGAGTGGTAATATCAAAATGACCTTCAAGGGGCATTCAGACTATTTGCATACTGTAGTT 658
Query 683 TCTCGTAGTTCTGCAAGTCAGATATTGACGGGTTCAGAGGATGGGACTGCGAGAATCTGG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCTCGTAGTTCTGCAAGTCAGATATTGACGGGTTCAGAGGATGGGACTGCGAGAATCTGG 718
Query 743 GATTGCAAAACGGGAAAATGTGTTAAAGTAATTGGTTCCCAGGATAAAAAGTCCCGCCTT 802
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GATTGCAAAACGGGGAAATGTGTTAAAGTAATTGGTTCCCAGGATAAAAAGTCCCGCCTT 778
Query 803 CGCGTTAGTTCTATGGCCCTTGATGGGAGTGAAAGCTGGTTGGTTTGTGGACAGGGCAAA 862
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 779 CGCGTTAGTTCTATGGCCCTTGATGGAAGTGAAAGCTGGTTGGTTTGTGGCCAGGGCAAA 838
Query 863 AATTTAGCTTTATGGAATCTTCCCGCCTCAGAATGCGTA-CAAACAATACCCATCCCTGC 921
||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||
Sbjct 839 AATTTAGCTTTATGGAATCTTCCTGCCTCAGAATGCGTATC-AACAATATCCATCCCTGC 897
Query 922 ACATGTACAGGATGTGATGTTTGATGAAAAGCAAATTTTGACTGTAGGAGCAGAACCACT 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 GCATGTACAGGATGTGATGTTTGATGAAAAGCAAATTTTGACTGTAGGAGCAGAACCAGT 957
Query 982 TCTAAGACGTTTCGACTTAAATGGAGCTTTGCTTTCTCAAATTCACTGTGCTCCTTGTTC 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCTAAGACGTTTCGACTTAAATGGAGCTTTGCTTTCTCAAATTCACTGTGCTCCTTGTTC 1017
Query 1042 AGTATTTTCCATTTCCTTGCATCCAGCAGGAGTAGTTGCTGTGGGAGGTTATGGAGGTAT 1101
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1018 AGTATTTTCCATTTCCTTGCATCCAGCAGGAGTAGTTGCTGTGGGAGGTTATGGCGGTCT 1077
Query 1102 TGTTGATGTCATCTCTCAATTTGGAAGCCATCTCTGCACATTTCGTAGCAGTTCATTGTA 1161
||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1078 TGTTGATGTCATCTCTCAATTCGGAAGTCATCTCTGCACATTTCGTAGCAGCTCATTGTG 1137
Query 1162 AAACTCCTTACAGTTTCTTGATTTGGCTCGATACCCTAAAGAGGTACCGAAATGTGTCAG 1221
||||||||||| | | | | ||||||||||||||||||||||||| |||||||||||
Sbjct 1138 AAACTCCTTAC--T--CG-G-TATGGCTCGATACCCTAAAGAGGTACCAAAATGTGTCAG 1191
Query 1222 TCAGATTATTGCAGAGGTTAAGAAACCTTTTCTTTGTTTTTCTTAGGATCTTGCTCCTGA 1281
||||||||||| | | ||||| ||||||||| |||||| ||||||||||||
Sbjct 1192 TCAGATTATTG-A-A----------CCTTTGCTTTGTTTTCCTTAGGTTCTTGCTCCTGA 1239
Query 1282 CTAAAGACCAATTAGTTGTTTGGTTAAGTGTAATTGGTTTGTGGTTCCGTAGTTGCTATC 1341
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1240 CTAAAGACCAAATAGTTGTTTGGTTCAGTGTAATTGGTTTGTGGTTCCGTAGTTGCTATC 1299
Query 1342 AAATTTGA 1349
|||||||
Sbjct 1300 GAATTTGA 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51732798369
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5