BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19440.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925289 jgi|Araly1|925289|scaffold_200850.1 1735 0.0
Ahg931454 jgi|Araly1|931454|scaffold_303911.1 501 6e-141
> Ahg925289 jgi|Araly1|925289|scaffold_200850.1
Length=1478
Score = 1735 bits (939), Expect = 0.0
Identities = 1241/1387 (89%), Gaps = 19/1387 (1%)
Strand=Plus/Plus
Query 4 AATCTGTTGGCCTTCGTCGTTGGATTTGGAATC---A-TGGGTA-TT--G--TTATGGTA 54
|||||||| ||| ||||||| ||||| | |||| | ||| || || | || |||||
Sbjct 27 AATCTGTTAGCCATCGTCGTCGGATTCGTAATCTTAATTGGTTATTTGGGTATTTTGGTA 86
Query 55 GATGGGCTAGGTGTCAACTGGGGAACAATGGCTACACATAAGCTTCCACCAAAGAAAGTG 114
||||| | ||||| || |||||||||||||||||||||||||| || ||||||| ||||
Sbjct 87 AATGGGTTGGGTGTGAATTGGGGAACAATGGCTACACATAAGCTGCCTCCAAAGACAGTG 146
Query 115 GTTCAAATGCTTAAGGACAATAACATTAACAAAGTTAAGCTTTTTGATGCGGATGAGACC 174
||||| |||||||||||||||||||| ||||| || ||||||||||| || || |||||
Sbjct 147 GTTCAGATGCTTAAGGACAATAACATCAACAAGGTGAAGCTTTTTGACGCAGACGAGACA 206
Query 175 ACTATGAGTGCACTTTCTGGCTCTGGTCTTGAAGTTATGGTTGCTATTCCTAATGATCAG 234
|| ||| ||||||| ||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct 207 ACCATGGGTGCACTCGCTGGCTCGGGTCTTGAAGTGATGGTCGCTATTCCAAATGATCAG 266
Query 235 CTTAAGGTTATGGGAAGTTATGACCGAGCTAAAGATTGGGTTCATAAGAATGTCACTCGT 294
|||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 267 CTTAAGGTTATGACCAGTTACGACCGAGCCAAAGATTGGGTTCGTAAGAATGTCACTCGT 326
Query 295 TATAACTTCAATGGTGGTGTCAATATCACGTTTGTAGCTGTTGGAAATGAGCCATTCCTC 354
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TATAACTTCGATGGTGGTGTCAATATCACGTTTGTAGCTGTTGGAAATGAGCCATTCCTC 386
Query 355 AAATCATACAATGGATCATTTATAAACCTCACATTCCCTGCACTT-CAAAACATCCAAAA 413
||||||||||||||||| || || ||||||||||| ||||||||| | || ||| |||||
Sbjct 387 AAATCATACAATGGATCGTTCATTAACCTCACATTTCCTGCACTTACGAA-CATTCAAAA 445
Query 414 CGCTTTGAATGAAGCTGGACTAGGAAGCTCCGTCAAAGCGACAGTCCCTTTAAACGCGGA 473
|||| | ||||||||||||||||||| ||| |||||||| || |||||||||||||||||
Sbjct 446 CGCTCTAAATGAAGCTGGACTAGGAAACTCAGTCAAAGCAACCGTCCCTTTAAACGCGGA 505
Query 474 TGTCTACGATTCACCATCAAGCAACCCTGTGCCATCTGCAGGAAGATTCCGTCCTGATAT 533
||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 506 TGTATACGATTCACCAGCAAGCAACCCTGTTCCATCTGCAGGAAGATTCCGTCCCGATAT 565
Query 534 CATCGGTCAAATGACTCAGATTGTTGACTTTCTTGGCAATAACAGTGCACCCATCACCAT 593
||| |||||||||||||| |||||||||||||||||||| |||| ||| |||||||| ||
Sbjct 566 CATTGGTCAAATGACTCAAATTGTTGACTTTCTTGGCAAGAACAATGCTCCCATCACAAT 625
Query 594 TAACATCTACCCTTTCTTAAGCCTCTATGGGAATGATGATTTTCCACTCAATTACGCCTT 653
||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 626 TAATATCTACCCTTTCTTAAGTCTCTATGGGAATGATGATTTCCCACTCAATTATGCCTT 685
Query 654 CTTTGATGGTGCTAAACC-AGTAGATGACAATGGTATTGCTTACACAAACGTTTTCGATG 712
||| ||||| ||| |||| | || ||||||| ||||||| ||||||||| ||||| ||||
Sbjct 686 CTTCGATGGGGCTCAACCGA-TAAATGACAACGGTATTGATTACACAAATGTTTTTGATG 744
Query 713 CCAATTTCGACACTTTGGTATCGGCTTTGAAAGCTGTTGGTCATGGAGATATGCCAATCA 772
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |
Sbjct 745 CCAATTTCGACACTTTGGTGTCGTCTTTGAAAGCTGTTGGTCATGGCGATATGCCAATAA 804
Query 773 TCGTTGGAGAAGTCGGTTGGCCAACAGAGGGTGACAAACACGCAAATAGTGGCAGTGCTT 832
||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 805 TCGTTGGAGAAGTCGGTTGGCCAACAGAGGGTGACAAACACGCGAATTCCGGCAATGCTT 864
Query 833 ACAGATTCTACAACGGTCTTTTACCAAGGCTTGGGGA-AAACAGAGGCACTCCACTGAGA 891
|||||||||||||||| ||||||||||||||||| | ||||| |||||||||| |||||
Sbjct 865 ACAGATTCTACAACGGGCTTTTACCAAGGCTTGGA-ACAAACAAAGGCACTCCATTGAGA 923
Query 892 CCAACCTACATTGAGGTATACTTGTTTGGATTACTTGATGAGGATGCGAAAAGTATAGCA 951
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 924 CCGACCTACATTGAGGTATACTTGTTCGGATTACTCGATGAGGATGCGAAAAGTATAGCA 983
Query 952 CCGGGAGAGTTTGAACGCCACTGGGGAATATTCAAATTCGACGGGCAACCAAAGTTTCCT 1011
|||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 984 CCGGGACCGTTTGAACGGCATTGGGGAATATTTAAATTCGACGGGCAACCAAAGTTTCCT 1043
Query 1012 ATAGATCTATCAGGTCAAGGACAGAACAAGTTGTTGATTGGTGC-CGAGAACGTGACGTA 1070
|||||||| ||||||||||||||||||||||||||||||||||| | | |||||| ||||
Sbjct 1044 ATAGATCTGTCAGGTCAAGGACAGAACAAGTTGTTGATTGGTGCACAA-AACGTGCCGTA 1102
Query 1071 TCAACCTAAGAAGTGGTGTATGTTTAATACAGAAGCCAAAGATTTGACAAAACTCGCTGC 1130
|| ||| || |||||||||| ||||||| ||||||||||||||||||||||||| || ||
Sbjct 1103 TCTACCCAACAAGTGGTGTACGTTTAATCCAGAAGCCAAAGATTTGACAAAACTGGCGGC 1162
Query 1131 TAACATAGATTACGCCTGCACTTTTTCGGATTGCACTGCGCTTGGTTACGGGTCTTCTTG 1190
||||||||||| |||||||||||| ||||||||||| ||||||||||| || ||||| ||
Sbjct 1163 TAACATAGATTTCGCCTGCACTTTCTCGGATTGCACAGCGCTTGGTTATGGATCTTCGTG 1222
Query 1191 CAATACTCTTGATGCAAATGGGAACGCTTCATATGCGTTTAACATGTATTTTCAAGTAAA 1250
|||||| |||||||| |||||||| || || |||||||||||||||||||||||||| ||
Sbjct 1223 CAATACACTTGATGCCAATGGGAATGCGTCGTATGCGTTTAACATGTATTTTCAAGTGAA 1282
Query 1251 GAACCAGGATGAG-GATGCTTGTATCTTCCAAGGTTTGGCCACCATTACCACAAAGAATA 1309
||| || ||||| | ||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 1283 GAATCAAGATGAAAG-TGCTTGTTTCTTCCAAGGTTTGGCCACCATCACCACACAGAATA 1341
Query 1310 TATCTCAGGGACAATGCAATTTCCCTATTCAGATTGTTGCTTCCACAGCTTCTTCATTTT 1369
||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||| ||||
Sbjct 1342 TATCTCAAGGACAATGCAATTTCCCTATTCAGATTGTGGCTTCCTCAGCCTCTTCCTTTT 1401
Query 1370 CTTCTTC 1376
||| |||
Sbjct 1402 CTTGTTC 1408
> Ahg931454 jgi|Araly1|931454|scaffold_303911.1
Length=376
Score = 501 bits (271), Expect = 6e-141
Identities = 299/313 (96%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 1 ATGAATCTGTTGGCCTTCGTCGTTGGATTTGGAATCATGGGTATTGTTATGGTAGATGGG 60
||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 24 ATGAATCTGTTGGCCATCGTCGTTGGATTTGGAATCATGGGTATTGTTGTGGTTGATGGG 83
Query 61 CTAGGTGTCAACTGGGGAACAATGGCTACACATAAGCTTCCACCAAAGAAAGTGGTTCAA 120
|||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 84 CTAGGTGTGTACTGGGGAACAATGGCTACACATAAGCTACCACCAAAGACAGTGGTTCAA 143
Query 121 ATGCTTAAGGACAATAACATTAACAAAGTTAAGCTTTTTGATGCGGATGAGACCACTATG 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 144 ATGCTTAAGGACAATAACATCAACAAAGTTAAGCTTTTTGATGCGGATGAGACCACAATG 203
Query 181 AGTGCACTTTCTGGCTCTGGTCTTGAAGTTATGGTTGCTATTCCTAATGATCAGCTTAAG 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 AGTGCACTTGCTGGCTCTGGTCTTGAAGTTATGGTTGCTATTCCTAATGATCAGCTTAAG 263
Query 241 GTTATGGGAAGTTATGACCGAGCTAAAGATTGGGTTCATAAGAATGTCACTCGTTATAAC 300
|| ||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 264 GTCATGGGAAGTTATGACCGAGCTAAGGATTGGGCTCTTAAGAATGTCACTCGTTATAAC 323
Query 301 TTCAATGGTGGTG 313
|||||||||||||
Sbjct 324 TTCAATGGTGGTG 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5