BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19450.1
Length=2074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480528 jgi|Araly1|480528|fgenesh2_kg.3__3229__AT2G19450.1 2809 0.0
> Ahg480528 jgi|Araly1|480528|fgenesh2_kg.3__3229__AT2G19450.1
Length=1917
Score = 2809 bits (1521), Expect = 0.0
Identities = 1787/1905 (94%), Gaps = 59/1905 (3%)
Strand=Plus/Plus
Query 144 TTTCCTCTTTCAATTTCTTCTGCATGCTTCTCGATTCTCTCTGACGCCTCTTTTCTCCCG 203
||||||||||||||||||||||||||||||| |||||||||||||| | | ||||| |||
Sbjct 36 TTTCCTCTTTCAATTTCTTCTGCATGCTTCTTGATTCTCTCTGACG-C-CGTTTCTTCCG 93
Query 204 ACGCTGTTTCGTCAAACGCTTTTCGAAATGGCGATTTTGGATTCTGCTGGC---GTTACT 260
| ||||||||||||| ||| |||| |||||||||||||| |||||| ||| |||| |
Sbjct 94 AAGCTGTTTCGTCAACCGC-TTTCCAAATGGCGATTTTGAATTCTGGAGGCGTTGTTAGT 152
Query 261 ACGGTGACGGAGAACGGTGGCGGAGAGTTCGTCGATCTTGATAGGCTTCGTCGACGGAAA 320
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 153 ACGGTGACGGAGAACGGTGGCGGAGAGTTTGTGGATCTTGATAGGCTTCGTCGACGGAAA 212
Query 321 TCGAGATCGGATTCTTCTAACGGACTTCTTCTCTCTGGTTCCGATAATAATTCT-CCTTC 379
||||||||||||||| |||| | | ||| | || | | ||| || || ||| |
Sbjct 213 TCGAGATCGGATTCT---AACG-A-TAATTCAC-CT--T-CAGATGATC-TTGGACCTCC 262
Query 380 GGATGATGTTGGAGCTCCCGCCGACGTTAGGGATCGGATTGATTCCGTTGTTAACGATGA 439
||| || ||| || | || | || || | ||||||||||||||||||||
Sbjct 263 GGACGACGTT--AG-----G--GA--TC-GG-AT----T-GATTCCGTTGTTAACGATGA 304
Query 440 CGCTCAGGGAACAGCCAATTTGGCCGGAGATAAT-AACGGTGGTGGCGATAA-TAACGGT 497
|||||| ||||||||||||||||| ||||||| || | || || || | |||
Sbjct 305 CGCTCAAGGAACAGCCAATTTGGCTGGAGATACCGAAA--TCA-GG-GA-AACT---GGT 356
Query 498 GGTGGAAGAGGCGGCGGAGAAGGAAGAGGAAACGCCGATGCTACGTTTACGTATCGACCG 557
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGTGGACGAGGCGGCGGAGAAGGAAGAGGAAACGCCGATGCTACGTTTACGTATCGACCG 416
Query 558 TCGGTTCCAGCTCATCGGAGGGCGAGAGAGAGTCCACTTAGCTCCGACGCAATCTTCAAA 617
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 417 TCGGTTCCTGCTCATCGGAGGGCGAGGGAGAGTCCACTCAGCTCCGACGCAATCTTCAAA 476
Query 618 CAGAGCCATGCCGGATTATTCAACCTCTGTGTAGTAGTTCTTATTGCTGTAAACAGTAGA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CAGAGCCATGCCGGATTATTCAACCTCTGTGTAGTAGTTCTTATTGCTGTAAACAGTAGA 536
Query 678 CTCATCATCGAAAATCTTATGAAGTATGGTTGGTTGATCAGAACGGATTTCTGGTTTAGT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTCATCATCGAAAATCTTATGAAGTATGGTTGGTTGATCAGAACGGATTTCTGGTTTAGT 596
Query 738 TCAAGATCGCTGCGAGATTGGCCGCTTTTCATGTGTTGTATATCCCTTTCGATCTTTCCT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCAAGATCGCTGCGAGATTGGCCGCTTTTCATGTGTTGTATATCCCTTTCGATCTTTCCT 656
Query 798 TTGGCTGCCTTTACGGTTGAGAAATTGGTACTTCAGAAATACATATCAGAACCTGTTGTC 857
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTGGCTGCTTTTACGGTTGAGAAATTGGTACTTCAGAAATACATATCAGAACCTGTTGTC 716
Query 858 ATCTTTCTTCATATTATTATCACCATGACAGAGGTTTTGTATCCAGTTTACGTCACCCTA 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATCTTTCTTCATATTATTATCACCATGACAGAGGTTTTGTATCCAGTTTACGTCACCCTA 776
Query 918 AGGTGTGATTCTGCTTTTTTATCAGGTGTCACTTTGATGCTCCTCACTTGCATTGTGTGG 977
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 AGGTGTGATTCTGCTTTTTTATCAGGTGTCACATTGATGCTCCTCACTTGCATTGTGTGG 836
Query 978 CTAAAGTTGGTTTCTTATGCTCATACTAGCTATGACATAAGATCCCTAGCCAATGCAGCT 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CTAAAGTTGGTTTCTTATGCTCATACTAGCTATGACATAAGATCCCTAGCCAATGCAGCT 896
Query 1038 GATAAGGCCAATCCTGAAGTCTCCTACTACGTTAGCTTGAAGAGCTTGGCATATTTCATG 1097
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 GATAAGGCCAATCCTGAAGTCTCCTACTATGTTAGCTTGAAGAGCTTGGCATATTTCATG 956
Query 1098 GTCGCTCCCACATTGTGTTATCAGCCAAGTTATCCACGTTCTGCATGTATACGGAAGGGT 1157
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 957 GTCGCTCCCACATTGTGTTATCAGCCAAGCTATCCACGTTCTGCATGTATACGGAAGGGT 1016
Query 1158 TGGGTGGCTCGTCAATTTGCAAAACTGGTCATATTCACCGGATTCATGGGATTTATAATA 1217
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1017 TGGGTGGCTCGTCAATTTGCAAAACTGGTCATATTCACTGGATTCATGGGATTTATAATA 1076
Query 1218 GAACAATATATAAATCCTATTGTCAGGAACTCAAAGCATCCTTTGAAAGGCGATCTTCTA 1277
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1077 GAACAATATATAAATCCCATTGTCAGGAACTCAAAGCATCCTTTGAAAGGGGATCTTCTA 1136
Query 1278 TATGCTATTGAAAGAGTGTTGAAGCTTTCAGTTCCAAATTTATATGTGTGGCTCTGCATG 1337
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1137 TACGCTATTGAAAGAGTGTTGAAGCTTTCAGTTCCAAATTTATACGTGTGGCTCTGCATG 1196
Query 1338 TTCTACTGCTTCTTCCACCTTTGGTTAAACATATTGGCAGAGCTTCTCTGCTTCGGGGAT 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTCTACTGCTTCTTCCACCTTTGGTTAAACATATTGGCAGAGCTTCTCTGCTTCGGGGAT 1256
Query 1398 CGTGAATTCTACAAAGATTGGTGGAATGCAAAAAGTGTGGGAGATTACTGGAGAATGTGG 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CGTGAATTCTACAAAGATTGGTGGAATGCAAAAAGTGTGGGAGATTACTGGAGAATGTGG 1316
Query 1458 AATATGCCTGTTCATAAATGGATGGTTCGACATATATACTTCCCGTGCTTGCGCAGCAAG 1517
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1317 AATATGCCTGTTCATAAATGGATGGTTCGACATATATACTTCCCGTGCCTGCGCAGCAAG 1376
Query 1518 ATACCAAAGACACTCGCCATTATCATTGCTTTCCTAGTCTCTGCAGTCTTTCATGAGCTA 1577
||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1377 ATACCAAAGACGCTCGCCATCATCATTGCTTTCTTAGTCTCTGCAGTCTTTCATGAGCTA 1436
Query 1578 TGCATCGCAGTTCCTTGTCGTCTCTTCAAGCTATGGGCTTTTCTTGGGATTATGTTTCAG 1637
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1437 TGCATCGCAGTTCCTTGTCGTCTCTTCAAGTTATGGGCTTTTCTTGGGATTATGTTTCAG 1496
Query 1638 GTGCCTTTGGTCTTCATCACAAACTATCTACAGGAAAGGTTTGGCTCAACGGTGGGGAAC 1697
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1497 GTGCCTTTGGTCTTTATCACAAACTATCTACAAGAAAGGTTTGGCTCAACGGTGGGGAAC 1556
Query 1698 ATGATCTTCTGGTTCATCTTCTGCATTTTCGGACAACCGATGTGTGTGCTTCTTTATTAC 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 ATGATCTTCTGGTTCATCTTCTGCATTTTCGGACAACCGATGTGTGTGCTTCTTTATTAC 1616
Query 1758 CACGACCTGATGAACCGAAAAGGATCGATGTCATGAAACAACTGTTCAAAAAATGACTTT 1817
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1617 CACGACCTGATGAACCGCAAAGGATCGATGTCATGAAACAACTGTTCAAAAA-TGACTTT 1675
Query 1818 CTTCAAACATCTATGGCCT----C---GTTGGATCTCCGTTGATGTTGTGGTGGTTCTGA 1870
|||||||||||||||| || | ||||||||||| | |||||||||||||||||||
Sbjct 1676 CTTCAAACATCTATGGACTATGGCCTTGTTGGATCTCCATCGATGTTGTGGTGGTTCTGA 1735
Query 1871 TGCTAAAACGACAAATAGTGTTATAACCATTGAAGAAGAAAAGAAAATTAGAGTTGTTGT 1930
||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1736 TGCTAAAACAACAAA--GTGTTAAAACCATTGAAGAAGAAAAGAAAATTGGAGTTGTTGT 1793
Query 1931 ATCTGCAAAAATTTTGGTAGAGACACGCGAACCC-GTTTGGATTTTGTTATGGTGTAAAG 1989
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1794 ATCTGCAAAAATTTTGGTAGAGACACGCGAACCCCGTTTGGATTTTGTTATGGTGTAAAG 1853
Query 1990 AAATTTCAATCAAAAAACTGTT--GTAATAATTGTTACCAAAAAG 2032
||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct 1854 AAAATTCAATCAAAAA-CTGTTTTGTAATAATTGTTACCAAAAAG 1897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78008821760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5