BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19460.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480527 jgi|Araly1|480527|fgenesh2_kg.3__3228__AT2G19460.1 750 0.0
> Ahg480527 jgi|Araly1|480527|fgenesh2_kg.3__3228__AT2G19460.1
Length=550
Score = 750 bits (406), Expect = 0.0
Identities = 493/531 (93%), Gaps = 22/531 (4%)
Strand=Plus/Plus
Query 16 aaaaaaagaa-aTCATTCGTCGACTTTATTACAAAACCCTCTCACA-A-C-A--CCATCA 69
||||||| || ||||||||| |||||||||||||||||||||||| | | | ||||||
Sbjct 1 AAAAAAA-AATGTCATTCGTCAACTTTATTACAAAACCCTCTCACACACCAATCCCATCA 59
Query 70 CTTCTTCTTCGTCTTCTGTCT--GAGTCCAAAATGGAAGACTACAGATCCAGATCGTACG 127
|||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 60 CTTCTTCTTCTTCTTCTGTCTGAGAGTCCAAAATGGAAGACTTCAGATCCAGATCGTACG 119
Query 128 GTGACGGGAGAACATCAGACCTTCAACAATACTCTGCTCACCGAAGATCCGACGGTCCAG 187
||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 120 GTGACGGAAGAACATCAGACCTTCAACAGTATTCAGCTCACCGAAGATCCGACGGTCCAG 179
Query 188 ATTCATTCAGTGGTAACGGTATGCAAGATCTTAGGTCTTACAGTACTTCCTACACAGATT 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTCATTCAGTGGTAACGGTATGCAAGATCTTAGGTCTTACAGTACTTCCTACACAGATT 239
Query 248 ACCCGACCCGGATACCCGAAGACCAGAACCCGAAGAAAGGAAGATCATCTTCATCGTCTT 307
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 ACCCGACCCGGATACCGGAAGACCCGAACCCGAAGAAAGGAAGATCATCTTCATCGTCTT 299
Query 308 CTTGGGGATTTGTGGATCCAGATTTACAAAGGAAGAAGAGAGTTGTTAGTTACAGAGCTT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTGGGGATTTGTGGATCCAGATTTACAAAGGAAGAAGAGAGTTGTTAGTTACAGAGCTT 359
Query 368 ATACTGTTGAAGGTAAGCTTAAAGGTTCTTTCAGAAAAAGCTTCAAATGGATCAAAGATA 427
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 ATACTGTTGAAGGTAAGCTTAAAGGTTCTTTCAGGAAAAGCTTCAAATGGATCAAAGATA 419
Query 428 AATGCAACAAATTACTTAATTAATTC-TGTCAAATGTGTTTTACATAAGATAATAAACTT 486
|||||||||||||||||||||||| | |||||||| ||||||| |||||||||||||||
Sbjct 420 AATGCAACAAATTACTTAATTAAT-CATGTCAAATCTGTTTTA--TAAGATAATAAACTT 476
Query 487 TTGTC-ACTTCGATCGGTTGAGTTTCAATCtttttttgtgtatgtgtgtgt 536
|| | | |||||| | ||||||||| ||||||| | | |||||||||
Sbjct 477 TTTTATA-TTCGAT-G----AGTTTCAATTTTTTTTTTT-T-TGTGTGTGT 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5