BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19470.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931448 jgi|Araly1|931448|scaffold_303905.1 2156 0.0
Ahg895008 jgi|Araly1|895008|Al_scaffold_0006_3004 1094 0.0
Ahg492204 jgi|Araly1|492204|fgenesh2_kg.7__1637__AT4G26100.1 593 1e-168
> Ahg931448 jgi|Araly1|931448|scaffold_303905.1
Length=1346
Score = 2156 bits (1167), Expect = 0.0
Identities = 1289/1349 (96%), Gaps = 4/1349 (0%)
Strand=Plus/Plus
Query 238 TTAGGGTTTTTTCAATTGGGTATGGAACCTCGTGTTGGGAACAAGTTTCGCCTTGGCCGC 297
||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 1 TTAGGGTTTTTCCAATTGGGTATGGAGCCTCGTGTCGGGAATAAGTTCCGCCTTGGCCGC 60
Query 298 AAAATTGGGAGCGGCTCTTTCGGAGAGATTTACCTCGGAACTGATGTTCAGACTAACGAA 357
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 AAAATTGGAAGCGGCTCATTCGGAGAGATTTACCTTGGAACTGATGTTCAGACTAACGAA 120
Query 358 GAAGTTGCTATTAAGCTTGAAAGTGTGAAGACTGCGCATCCGCAATTGTCATATGAGTCG 417
|| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 121 GAGGTTGCTATTAAGCTTGAAAATGTGAAGACTGCGCATCCGCAATTGTCGTATGAGTCG 180
Query 418 AGGATATATAGAGTTCTTCAGGGTGGAACTGGGATTCCAAATATGAAATGGTATGGTGTT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGATATATAGAGTTCTTCAGGGTGGAACTGGGATTCCAAATATGAAATGGTATGGTGTT 240
Query 478 GAGGGGGACTACAATGTCTTAGTCATGGATTTGCTTGGTCCAAGTCTTGAAGATTTGTTT 537
||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||||
Sbjct 241 GAGGGGGACTACAATGTCTTAGTGATGGATTTGCTTGGTCCTAGCCTTGAAGATCTGTTT 300
Query 538 AGTTATTGCAAGAGGCAGTTTAGCTTGAAGACTGTTCTTATGCTTGCTGATCAAATGATA 597
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTTATTGCCATAGGAAGTTTAGCTTGAAGACTGTTCTTATGCTTGCTGATCAAATGATA 360
Query 598 AATCGTCTCGAGTTCATTCATTCTAAGTCGTATCTTCATCGTGATATAAAGCCGGATAAT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATCGTCTCGAGTTCATTCATTCTAAGTCGTATCTTCATCGTGATATAAAGCCGGATAAT 420
Query 658 TTTCTCATGGGCTTAGGGAGGCGGGCAAATCAGGTCTACATCATAGACTATGGTTTGGCT 717
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 421 TTTCTCATGGGTTTAGGGAGGCGTGCAAATCAGGTCTACATCATAGACTATGGCTTGGCT 480
Query 718 AAGAAATATAGAGACAGCTCAACTCATAGACATATCCCATACAGGGAGAATAAAAGTCTA 777
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 AAGAAATATAGAGACAGCTCAACTCATCGACATATCCCATACAGGGAGAATAAAAGTCTA 540
Query 778 ATTGGGACTCCGAGGTATGCCAGCTTGAACACTCACCTAGGGATTGAGCAAAGTCGGAGA 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 ATTGGGACTCCGAGGTATGCCAGCTTGAACACTCACCTAGGGATCGAGCAAAGTCGGAGA 600
Query 838 GATGATATAGAATCGCTTGGTTACATCCTCATGTATTTCCTCAAGGGAAGTCTCCCTTGG 897
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 601 GATGATATAGAATCACTTGGTTACATCCTCATGTATTTTCTCAAGGGAAGTCTCCCATGG 660
Query 898 CAAGGG-CTGAAAGCTGGAAACAAGAAACAGAAGTATGATAAGATCAGCGAAAAGAAGGT 956
|| ||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 661 CA-GGGACTGAAAGCTGGGAACAAGAAACAGAAATATGATAAGATCAGTGAAAAGAAGGT 719
Query 957 TTCAACTTCCATCGAAACGTTATGCAGAGGTCATCCAACAGAGTTTGCATCTTACTTCCA 1016
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 TTCTACTTCCATCGAAACGTTATGCAGAGGTCATCCAACAGAGTTTGCATCCTACTTCCA 779
Query 1017 TTACTGCCGCTCACTTAGGTTTGATGATAAGCCAGACTATGCATATTTGAAGAGACTATT 1076
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTACTGCCGCTCACTAAGGTTTGATGATAAGCCAGACTATGCATATTTGAAGAGACTATT 839
Query 1077 CCGCAACCTTTTTATCCGGGAAGGTTTTCAGTTTGATTTTGTGTTTGACTGGACAGTATA 1136
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 CCGCAACCTTTTTATTCGTGAAGGTTTTCAGTTTGATTTCGTGTTTGACTGGACAGTATA 899
Query 1137 CAAGTATCAGCAATCACAATCTGGAAACCCTCAACCTCGTCCCCATGATGGTGGTGTTGG 1196
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 900 CAAGTATCAGCAATCACAATCTGGAAACTCTCAACCTCGTCCCCATGATGGTGGTGTTGG 959
Query 1197 AACTAGTTCTGGATTAAACCCTGCGGTTGGCAATTCTGAGAAGCGTCCAGATGTCCCAAA 1256
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 960 AACTAGTTCTGGATTAAACCCTGCGGTCGGCAATTCTGAGAAGCTTCCAGATGTCCCAAA 1019
Query 1257 TCAGAGGACAAATCCGGATTTTACCCTGAAGCAGAAAGACAAGAATGGAAATGATTCTGC 1316
|||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct 1020 TCAGAGAACAAATCCGGATTTTACCATGAAGCAGAAAGACAAGAATGTAAATGAATCTGC 1079
Query 1317 AATTGCAAAGGACAAGCTGCTACCTGGATCTTTGAACTTGGGCCGATCAGAGGGATCATC 1376
|||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1080 AATTGCAAAGGATAAGCTGCTACCTGGATCCTTGAACTTGGGTCGATCAGAAGGATCATC 1139
Query 1377 GTCAAGACGAGTTGTGGACACGAGCAGTCGTGAACCATTTAGTGGCGGGAGTGACAATGC 1436
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 ATCAAGACGAGTTGTGGACACAAGCAGTCGTGAACCATTCAGTGGCGGGAGTGACAATGC 1199
Query 1437 AAACTATGAAACCGCACTCAAAGGCATTGATGGTTTACGGATCAATAACAATGCAGGCGA 1496
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1200 AAACTATGAAACCGCACTCAAAGGCATTGATGGCTTACGGATCAATAACAATGCAGGTGA 1259
Query 1497 TGAGACAGCAGCAACGCCACAATCAAATGGAGACGATGTAGAACCCCAAAGCAAAGCTCT 1556
||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 1260 TGAGACAGCAGCAACGCCACACTTAAATGGAGACGATGTAGAACCC-AAAGCAAAGCTCT 1318
Query 1557 CTGACTGATTCATACAAAGCAGCTATAAA 1585
|||| |||||||||||| | |||||||||
Sbjct 1319 CTGATTGATTCATACAA-GAAGCTATAAA 1346
> Ahg895008 jgi|Araly1|895008|Al_scaffold_0006_3004
Length=936
Score = 1094 bits (592), Expect = 0.0
Identities = 819/927 (88%), Gaps = 22/927 (2%)
Strand=Plus/Plus
Query 259 ATGGAACCTCGTGTTGGGAACAAGTTTCGCCTTGGCCGCAAAATTGGGAGCGGCTCTTTC 318
||||||| |||| ||||||| ||||| || ||||| || |||||||| |||||||| |||
Sbjct 1 ATGGAACTTCGTATTGGGAATAAGTTCCGGCTTGGTCGGAAAATTGGTAGCGGCTCATTC 60
Query 319 GGAGAGATTTACCTCGGAACTGATGTTCAGACTAACGAAGAAGTTGCTATTAAGCTTGAA 378
|||||||||||||| |||| |||| |||||| ||||||||| ||||| |||||| |||||
Sbjct 61 GGAGAGATTTACCTTGGAAGTGATATTCAGAGTAACGAAGATGTTGCAATTAAGTTTGAA 120
Query 379 AGTGTGAAGACTGCGCATCCGCAATTGTCATATGAGTCGAGGATATATAGAGTTCTTCAG 438
||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AGTGTGAAGACTGTGCATCCACAATTGTCATATGAGTCAAGGATATATAGAGTTCTTCAG 180
Query 439 GGTGGAACTGGGATTCCAAATATGAAATGGTATGGTGTTGAGGGGGACTACAATGTCTTA 498
||||||| ||| |||||||| |||||||||||||| || || ||||| ||||||||||||
Sbjct 181 GGTGGAATTGGAATTCCAAACATGAAATGGTATGGCGTCGATGGGGATTACAATGTCTTA 240
Query 499 GTCATGGATTTGCTTGGTCCAAGTCTTGAAGATTTGTTTAGTTATTGCAAGAGGCAGTTT 558
|| ||||||||||||||| ||| ||||||||| ||||| |||||||||| | | |||||
Sbjct 241 GTGATGGATTTGCTTGGTGGAAGCCTTGAAGATCTGTTTTGTTATTGCAACAAGAAGTTT 300
Query 559 AGC-TTGAAGACTGTTCTTATGCTTGCTGATCAAATGATAAATCGTCTCGAGTTCATTCA 617
| | |||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 301 A-CATTGAAGACAGTTCTCATGCTAGCTGATCAAATGATTAATCGGCTCGAGTTCATCCA 359
Query 618 TTCTAAGTCGTATCTTCATCGTGATATAAAGCCGGATAATTTTCTCATGGGCTTAGGG-A 676
||||||||||| |||||||||||||||||||||||||||||| || ||||| || ||| |
Sbjct 360 TTCTAAGTCGTTTCTTCATCGTGATATAAAGCCGGATAATTTCCTTATGGG-TTTGGGAA 418
Query 677 GGCGGGCAAATCAGGTCTACATCATAGACTATGGTTTGGCTAAGAAATATAGAGACAGCT 736
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 419 GGCAGGCAAATCAGGTCTACATCATAGACTTTGGTTTGGCTAGGAAATATAGAGATAGCT 478
Query 737 CAA-CTCATAGACATATCCCATACAGGGAGAATAAAAGTCTAATTGGGACTCCGAG-GTA 794
||| || | ||||||| ||||| |||||||||||| ||||| ||||||| ||| | |||
Sbjct 479 CAAGCT-ACCGACATATACCATATAGGGAGAATAAACGTCTAGTTGGGACACCG-GCGTA 536
Query 795 TGCCAGCTTGAACACTCACCTAGGGATTGAGCAAAGTCGGAGAGATGATATAGAATCGCT 854
||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||
Sbjct 537 TGCCAGCTTGAACACTCACTTAGGGATCGAGCAAAGTCGGAGGGATGATATAGAATCACT 596
Query 855 TGGTTACATCCTCATGTATTTCCTCAAG-GGAAGTCTCCCTTGGCAAGGGCTGAAAGCTG 913
|||||| ||||||||||| |||||| || |||||||| || ||| |||| || ||| |||
Sbjct 597 TGGTTATATCCTCATGTACTTCCTC-AGAGGAAGTCTTCCATGGAAAGGACTAAAATCTG 655
Query 914 GAAACAAGAAACAGA-AGTATGATAAGATCAGCGAAAAGAAGGTTTCAACTTCCATCGAA 972
| ||||||||||||| | ||||| ||||| | ||| ||||| ||||||||||||||||||
Sbjct 656 GGAACAAGAAACAGATA-TATGACAAGATTAACGATAAGAAAGTTTCAACTTCCATCGAA 714
Query 973 ACGTTATGCAG-AGGTCATCCAACAGAGTTTGCATCTTACTTCCATTACTGCCGCTCACT 1031
||||||||| | ||||||||||| |||||||||| | ||| |||||||||||||||| ||
Sbjct 715 ACGTTATGC-GAAGGTCATCCAATAGAGTTTGCAACCTACCTCCATTACTGCCGCTCCCT 773
Query 1032 TAGGTTTGATGATAAGCCAGACTATGCATATTTGAAGAGACTATTCCGCAACCTTTTTA- 1090
|||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 774 TAGGTTCGTTGATAAGCCAGACTATGCATATTTGAAGAGACTATTCCGCGACCTTTTTAC 833
Query 1091 TCCGGGAAGGTTTTCAGTTTGATTTTGTGTTTGACTGGAC-AGTAT-ACAAGTATCAGCA 1148
|| | |||||||||||||||||||||||||| |||||||| | ||| | ||||||| |||
Sbjct 834 TC-GTGAAGGTTTTCAGTTTGATTTTGTGTTCGACTGGACGA-TATTA-AAGTATCCGCA 890
Query 1149 ATCACAAT-CTGGAAACCCTCAACCTC 1174
|||||||| | |||||||||| |||||
Sbjct 891 ATCACAATGC-GGAAACCCTCCACCTC 916
> Ahg492204 jgi|Araly1|492204|fgenesh2_kg.7__1637__AT4G26100.1
Length=1672
Score = 593 bits (321), Expect = 1e-168
Identities = 727/919 (79%), Gaps = 44/919 (5%)
Strand=Plus/Plus
Query 259 ATGGAACCTCGTGTTGGGAACAAGTTTCGCCTTGGCCGCAAA-ATTGGGAGCGGCTC-TT 316
||||||||||||||||||||||||||||| || || || ||| || || || || || ||
Sbjct 200 ATGGAACCTCGTGTTGGGAACAAGTTTCGGCTCGGACG-AAAGATCGGTAGTGGTTCGTT 258
Query 317 TCGGAGAGATTTACCTCGGAACTGATGTTCAGACTAACGAAGAAGTTGCTATTAAGCTTG 376
| || ||||| || ||||| ||| || |||| || || |||||||| |||||||||||||
Sbjct 259 TGGG-GAGATCTATCTCGGTACTAATATTCATACGAATGAAGAAGTGGCTATTAAGCTTG 317
Query 377 AAAGTGTGAAGACTGCGCATCCGCAATTG-TCATATGAGTCGAGGATATATAG-AGTTCT 434
||||||||||||| |||||||| || || ||||| || | | | || || | ||||
Sbjct 318 AAAGTGTGAAGACAAAACATCCGCAGCTGCTC-TATGAATCAAAGTTGTACAGGA-TTCT 375
Query 435 TCA-GGGTGGAACTGG-GATTCCAAATATGAAATGGTATGGTGTTGAGGGGGACTACAAT 492
|| ||| |||||||| | |||||||| | ||||||| ||||||||| |||||||| |||
Sbjct 376 ACAAGGG-GGAACTGGTG-TTCCAAATGTCAAATGGTTTGGTGTTGAAGGGGACTATAAT 433
Query 493 GTCTTAGTCATGGATTTGCTTGGTCCAAGTCTTGAAGATTTGTTTAGTTATTGCAAG-AG 551
|| || ||||||||||| || || ||||||||||||||| | || | || ||| | | ||
Sbjct 434 GTTTTGGTCATGGATTTACTCGGACCAAGTCTTGAAGATCTCTTCAATTTTTGTA-GCAG 492
Query 552 GCAG-TTTAGCTTGAAGACTGTTCTTATGCTTGCTGATCAAATGATAAATCGTCTCGAGT 610
| | ||| ||||||| | || || |||||||||||||||||||| || ||| | ||||
Sbjct 493 GAAACTTTC-CTTGAAGTCAGTCCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGT 551
Query 611 -TCATTCATTCTAAGTCGTATC-TTCATCGTGATATAAAGCCGGATAATTTTCTCATGGG 668
| ||||||| || || | || |||| || ||| | ||||| || ||||| || |||||
Sbjct 552 ATT-TTCATTCAAAATCTT-TCCTTCACCGAGATCTCAAGCCAGACAATTTCCTAATGGG 609
Query 669 C-TTAGGGAGGCGGGCAAATCAGGTCTACATCATAGACTATGGT-TTGGCTAAGAAATAT 726
| || || ||||| ||||| ||||| |||||||| |||| |||| ||| ||||||| ||
Sbjct 610 CCTT-GGAAGGCGTGCAAACCAGGTATACATCATTGACTTTGGTCTTG-CTAAGAAGTAC 667
Query 727 AGAGACAGCT-CAACTCAT-AG-ACATATCCCATACAGGGAGAATAA-AAGTCTAATTGG 782
|| || || | |||| ||| || |||| |||| |||||||| ||||| || || | ||
Sbjct 668 AGGGATAG-TACAACACATCAGCACAT-TCCC-TACAGGGAAAATAAGAAC-CTGACAGG 723
Query 783 GACTCCGAGGTATGCCAGCT-TGAACACTCACCTAGGGA-TTGAGCAAAGTCGGAGAGAT 840
||| |||| ||||| || | ||||||||||| | |||| |||| |||||||| || |||
Sbjct 724 AACTGCGAGATATGCTAG-TATGAACACTCACTT-GGGAATTGAACAAAGTCGAAGGGAT 781
Query 841 GATATAGAATCGCTTGGTTACATCCTCATGTATTTCCTCAAGGGAAGTCTCCCTTGGCAA 900
||| | || || |||||||||||||| |||||||||||||| |||||||| || ||||||
Sbjct 782 GATCTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAA 841
Query 901 GGGCTGAAAGCTGGAAACAAGAAA-CAGAAGTATGATAAG-ATCAGCGAAAAGAAGGTTT 958
|| ||||||||||||| ||| ||| || ||||| || ||| || ||||||||||| ||||
Sbjct 842 GGACTGAAAGCTGGAACCAA-AAAGCAAAAGTACGA-AAGGATTAGCGAAAAGAAAGTTT 899
Query 959 CAACTTCCATCGAAACGTTATG-CAGAGGTCATCCAACAGAGTTTGCATCTTACTTCCAT 1017
| || ||||| || | ||||| | | ||| | || | || |||||||| || |||||
Sbjct 900 CTACATCCATTGAGGCATTATGTC-GTGGTTACCCGTCCGAATTTGCATCATATTTCCAC 958
Query 1018 TACTGCCGCTCACTTAGGTTTGATGATAAGCCAGACTATGCATATTTGAAGAGACTATTC 1077
||||| || || || | ||||||||||| ||||| ||||| ||| | || ||| ||||
Sbjct 959 TACTGTCGGTCGCTGCGTTTTGATGATAAACCAGATTATGCTTATCTCAAAAGAATATTT 1018
Query 1078 CGCA-ACCTTTTTATCCGGGAAGGTTTTCAGTTTGATTTTGTGTTTGACTGGACAGTATA 1136
|| | | || |||||||| ||||| ||||| ||||||| |||||||||||||||| | |
Sbjct 1019 CG-AGATCTCTTTATCCGTGAAGGGTTTCAATTTGATTATGTGTTTGACTGGACAATCTT 1077
Query 1137 CAAGTATCAGCAATCACAA 1155
|||||||| |||||||||
Sbjct 1078 GAAGTATCAACAATCACAA 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5