BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19480.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480524 jgi|Araly1|480524|fgenesh2_kg.3__3225__AT2G19480.2 2069 0.0
> Ahg480524 jgi|Araly1|480524|fgenesh2_kg.3__3225__AT2G19480.2
Length=1486
Score = 2069 bits (1120), Expect = 0.0
Identities = 1420/1552 (91%), Gaps = 71/1552 (5%)
Strand=Plus/Plus
Query 6 TTATTTCGGTCTGGTCATTTTCTCAAAGCCCTTTTAGTTATTTATATATATA-TTCTCTG 64
|||||||||| ||||||||||||| ||||||||||| |||| |||| ||||| |||| |
Sbjct 1 TTATTTCGGTGTGGTCATTTTCTCGAAGCCCTTTTATTTATATATAAATATATTTCTTTT 60
Query 65 TCTCGTATTTGTCCCCAAAAATCTAGGGTTTTAAGGTTTCTTATCCTTCCTCTTCCTCCG 124
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTTATTAGTCCCCAAAAATCTAGGGTTTTAAGGTTTCTTATCCTTCCTCTTCCTCCG 120
Query 125 CCAGATTCTTTTCTTGCGAAGATGAGCAACGACAAGGACAGCATGAACATGTCCGATCTC 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CCAGATTCTTTTCTTGCGAAGATGAGCAACGACAAGGACAACATGAACATGTCCGATCTC 180
Query 185 TCCACCGCTCTTAACGAGGAGGATCGTGCCGGGCTTGTTAATGCTCTTAAGAACAAGTTG 244
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACGCCGCTCTTAACGAGGAGAATCGTGCCGGGCTTGTTAATGCTCTTAAGAACAAGTTG 240
Query 245 CAGAATTTGGCTGGACAACACTCTGATGTCCTTGAAAACTTGACTCCACCAGTCAGGAAG 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 CAGAATTTGGCTGGACAACACTCTGATGTCCTTGAAAACTTGACTCCAACAGTCAGGAAG 300
Query 305 CGTGTCGAGTTTCTAAGAGAGATTCAGAACCAATATGATGAGATGGAAGCAAAATTCTTT 364
||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 CGTGTGGAGGTTCTAAGGGAGATTCAGAACCAATATGATGAAATGGAAGCAAAATTCTTC 360
Query 365 GAGGAGAGAGCAGCTCTTGAAGCTAAGTATCAAAAGTTATATCAGCCTTTATATACCAAG 424
||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 361 GAGGAAAGGGCAGCTCTGGAAGCGAAATATCAAAAGTTATATCAGCCTTTATATACCAAG 420
Query 425 CGATATGAGATTGTGAATGGTGTGGTCGAAGTTGAAGGTGCAGCTGAAGAAGTAAAATCC 484
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 421 CGATATGAGATTGTGAATGGTGTGGTCGAAGTTGAAGGTGCAGGGGAAGATGTAAAATCT 480
Query 485 GAACAAGGAGAAGATAAATCAGCTGAAGAGAAAGGAGTACCAGATTTCTGGCTTATTGCA 544
|||||||||||||| ||| ||| | |||||||||||| |||||||| ||||||||||||
Sbjct 481 GAACAAGGAGAAGACAAAGCAGAAGCAGAGAAAGGAGTGCCAGATTTTTGGCTTATTGCA 540
Query 545 TTGAAGAACAATGAAATTACTGCGGA--AG-AGATAACTGAGCGAGATGAAGGGGCTCTC 601
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 541 TTGAAGAACAATGAAATTACTGCTGAGGAGGAGATAACTGAGCGAGATGAAGGGGCTCTC 600
Query 602 AAGTATCTCAAAGATATCAAGTGGAGTAGGGTTGAAGAACCAAAAGGGTTCAAGCTTGAG 661
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGTATCTTAAAGATATCAAGTGGAGTAGGGTTGAAGAACCAAAAGGGTTCAAGCTTGAG 660
Query 662 TTTTTCTTTGATCAGAATCCTTACTTCAAGAACACTGTCTTGACCAAGACATATCACATG 721
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTTTCTTTGATCAGAACCCTTACTTCAAGAACACTGTCTTGACCAAGACATATCACATG 720
Query 722 ATTGATGAAGATGAGCCTATCCTTGAGAAGGCCCTCGGGACGGAGATTGAGTGGTATCCT 781
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 ATTGATGAAGATGAGCCTATCCTTGAGAAGGCCCTCGGGACCGAGATTGAGTGGTATCCT 780
Query 782 GGAAAGTGTTTGACACAGAAGATTCTAAAAAAGAAGCCAAAGAAAGGATCCAAAAACACA 841
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAAAGTGTTTGACTCAGAAGATTCTAAAAAAGAAGCCAAAGAAAGGATCCAAAAACACA 840
Query 842 AAGCCGATCACTAAGACTGAGGACTGTGAGAGTTTCTTCAACTTTTTCAGTCCACCTCAA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGCCGATCACTAAGACTGAGGACTGTGAGAGTTTCTTCAACTTTTTCAGTCCACCTCAA 900
Query 902 GTTCCTGACGATGATGAGGATCTTGATGATGACATGGCTGATGAACTCCAAGGACAAATG 961
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 901 GTTCCTGACGATGATGAGGATCTTGATGATGATATGGCTGATGAACTTCAAGGCCAAATG 960
Query 962 GAGCATGATTATGATATCGGTTCAACAATCAAAGAGAAAATCATCTCGCATGCTGTGTCA 1021
||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 961 GAGCACGACTATGATATCGGGTCAACAATTAAAGAGAAAATCATCTCGCATGCTGTGTCA 1020
Query 1022 TGGTTCACTGGTGAAGCTGttgaggcagatgaccttgatattgaggacgacgatgatgag 1081
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 TGGTTCACTGGTGAAGCTGTTGAGGCAGATGACCTTGATATTGAGGAGGACGATGATGAG 1080
Query 1082 attgatgaagatgatgatgaagaggacgaggaagatgatgaggatgacgaggaggaggat 1141
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1081 ATTGATGAAGATGATGATGA------CGAGGAAGATGATGAGGATGACGAGGAGGATGAT 1134
Query 1142 gatgaggatgatgacgaggaggaAGAAGCAGATCAAGGAAAGAAGAGCAAAAAGAAGTCA 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1135 GATGAGGATGATGACGAGGAGGAAGAAGCAGATCAAGGAAAGAAGAGCAAAAAGAAG--A 1192
Query 1202 TCAGCTGGGCACAAGAAGGCTGGAAGAAGTCAACTTGCGGAAGGTCAAGCAGGTGAGAGG 1261
|| | | |||||||||||||| |||||||||||||||||||||||||
Sbjct 1193 --AG--G--C----------TGGAAGAAGTCAACCTGCGGAAGGTCAAGCAGGTGAGAGG 1236
Query 1262 CCACCGGAATGTAAGCAGCAGTGAAGAAGTGAAGAATCTTGGCTTAGTTATGATGAAGAA 1321
||||||||||| |||||||||||||||| ||||||||||||||||| | | ||||||||
Sbjct 1237 CCACCGGAATGCAAGCAGCAGTGAAGAACTGAAGAATCTTGGCTTA-TC-T-ATGAAGAA 1293
Query 1322 GAAGAGTGAAGAGTGTCTTTGAGCCGAGGTTGTGTTTCTTTAATTTGCAGAGTCATGGTC 1381
|||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1294 GAAG--T---------CTTTGAGCCGAGGTTGTGTTTCTT-AATTTGCAGAGTCATGGTC 1341
Query 1382 CGGTTTATTATATATCAGTTTTGGGTGATTGGTTTGCTATTTaaaaaaaaaaaaTGGGTT 1441
||||| ||||||||||||||||||||| |||||||||| ||| || ||
Sbjct 1342 CGGTTAATTATATATCAGTTTTGGGTGGTTGGTTTGCT-TTT-------------GG-TT 1386
Query 1442 CTTTGGTTTGGTTTGTGTCTCTTGATTTTTCCTTTTGTAATGATCTTATGAATTTG-TTT 1500
| |||||| | || ||||||||||||| ||| |||||| ||||||||||||| |||
Sbjct 1387 -T--GGTTTG-T--GT--CTCTTGATTTTTCATTT-GTAATGTTCTTATGAATTTGATTT 1437
Query 1501 CGAGTTAATGTCGTTCTCTGGTCAGATTTCGAATTCAATTCTATTTATCCTC 1552
|||||||||||||||| ||||||||||||||| ||||| ||||||| |||
Sbjct 1438 -GAGTTAATGTCGTTCT--GGTCAGATTTCGAATCCAATTTTATTTATTCTC 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5