BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19500.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480522 jgi|Araly1|480522|fgenesh2_kg.3__3223__AT2G19500.1 2257 0.0
Ahg916656 jgi|Araly1|916656|Al_scaffold_0008_1407 549 2e-155
> Ahg480522 jgi|Araly1|480522|fgenesh2_kg.3__3223__AT2G19500.1
Length=1580
Score = 2257 bits (1222), Expect = 0.0
Identities = 1471/1588 (93%), Gaps = 30/1588 (2%)
Strand=Plus/Plus
Query 1 GTTGTAATTCTCTTCTTCAAAAATCAAATCagagagagagagaA--ACATAAACA-AATG 57
||| |||||||||||||| ||||||||||||||||||||||||| | | ||| | ||||
Sbjct 1 GTTATAATTCTCTTCTTC-AAAATCAAATCAGAGAGAGAGAGAACGAAAAAAAAATAATG 59
Query 58 GCTAATCTTCGTTTAATGATCAC---TTTAATCACGGTTT-TAAT-GA---TCACCAAAT 109
|||||||||||| |||| ||||| ||| || |||| | | || |||||||||
Sbjct 60 GCTAATCTTCGTCTAATAATCACAGTTTTGAT--TTGTTTATTCTCGAGCTTCACCAAAT 117
Query 110 CATCAAACGGTATTAAAATTGATTTACCTAAATCCCTTAACCTCACCCTCTCTACCGATC 169
||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 118 CATCAAACGTTATTAAAATTGATTTACCTAAATCTCTTAACCTCACCCTCTCCACCGATC 177
Query 170 CTTCCATCATCTCCGCAGCCTCTCATGACTTCGGAAACATAACCACCGTGACCCCCGGCG 229
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 178 CTTCCATCATCTCCGCCGCCTCTCATGACTTCGGAAACATCACCACCGTGACCCCCGGCG 237
Query 230 GCGTAATCTGCCCCTCCTCCACCGCTGATATCTCTCGTCTCCTCCAATACGCCGCAAACG 289
| || |||||||| |||||| |||| ||||| ||||||||||||||||||||||| ||||
Sbjct 238 GTGTTATCTGCCCTTCCTCCTCCGCCGATATATCTCGTCTCCTCCAATACGCCGCGAACG 297
Query 290 GAAAAAGTACATTCCAAGTAGCGGCTCGTGGCCAAGGCCACTCCTTAAACGGCCAAGCCT 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAAAAAGTACATTCCAAGTAGCGGCTCGTGGCCAAGGCCACTCCTTAAACGGCCAAGCCT 357
Query 350 CGGTCTCCGGCGGAGTAATCGTCAACATGACGTGTATCACTGA-CGTGGTGGTTTCAAAA 408
| ||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||
Sbjct 358 CCGTCTCCGGCGGAGTAATCGTCAACATGACATGTCTCACT-AGCGTGGTGGTTTCAAAA 416
Query 409 GACAAGAAGTACGCTGACGTGGCGGCCGGGACGTTATGGGTGGATGTGCTT-AAGAAGAC 467
|| |||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 417 GATAAGAAGTATGCTGACGTGGCGGCCGGGACGTTATGGGTAAATGTG-TTAAAGAAGAC 475
Query 468 GGCGGAGAAAGGGGTGTCGCCGGTTTCTTGGACGGATTATTTGCATATAACCGTCGGAGG 527
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GGCGGAGGAAGGGGTGTCGCCGGTTTCTTGGACGGATTATTTGCATATAACCGTCGGAGG 535
Query 528 AACGTTGTCGAATGGTGGAATTGGTGGTCAAGTGTTTCGAAACGGTCCTCTTGTTAGTAA 587
|||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||
Sbjct 536 AACGTTGTCGAATGGTGGCATCGGTGGTCAAGTGTTTCGAAACGGTCCTCTTATTAGGAA 595
Query 588 CGTCCTTGAATTGGACGTTATTACTGGGAAAGGTGAAATGTTGACATGCTCGCGACAGCT 647
||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 596 CGTCCTTGAATTGGACGTTATAACTGGGAAAGGGGAAGTGTTGACATGCTCGCGACAGCT 655
Query 648 AAACCCAGAATTGTTCTATGGAGTGTTAGGAGGTTTGGGTCAATTTGGAATTATAACGAG 707
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 656 AAATCCAGAATTGTTCTATGGAGTTTTAGGAGGTTTAGGTCAATTTGGAATTATAACGAG 715
Query 708 AGCCAGAATTGTTTTGGACCATGCACCTAAACGGGCCAAATGGTTTCGGATGCTCTACAG 767
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 716 AGCCAGAATTGTTTTGGACCATGCACCTAAAAGGGCCAAATGGTTTCGGATGCTCTACAG 775
Query 768 TGATTTCACAACTTTTACAAAGGACCAAGAACGTTTGATATCAATGG-CAAACGATATTG 826
||| |||||||||||||| |||||||||||||||||||||||||||| | || |||||||
Sbjct 776 TGACTTCACAACTTTTACGAAGGACCAAGAACGTTTGATATCAATGGTC-AATGATATTG 834
Query 827 GAGTCGACTATTTAGAAGGTCAAATATTTCTATCAAACGGTGTCGTTGACACCTCTTTTT 886
|||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 835 GAGTTGACTATTTAGAAGGTCAAATATTTCTATCAAACGGCGTCGTAGATACCTCTTTTT 894
Query 887 TCCCACCTTCAGATCAATCTAAAGTCGCTGATC-TAGT-CAAGCAACACGGTATCATCTA 944
||||||| || || ||||||||||||||||| | |||| ||| | |||||| |||| ||
Sbjct 895 TCCCACCGTCCGACCAATCTAAAGTCGCTGA-CTTAGTGAAAG-AGCACGGTGTCATTTA 952
Query 945 TGTTCTTGAAGTAGCCAAGTATTATGATGATCCCAATCTCCCCATCATCAGCAAGGTTAT 1004
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 953 TGTTCTTGAAGTAGCCAAGTATTATGATGATCCCAATCTTCCCATCATAAGCAAGGTTAT 1012
Query 1005 TGACACATTAACGAAAA-CATTAAGTTACTTGCCCGGGTTCATATCAATGCACGACGTGG 1063
||||||||||||||||| | |||||||||||||||||||||||||| ||||| || ||
Sbjct 1013 TGACACATTAACGAAAAGC-TTAAGTTACTTGCCCGGGTTCATATCGATGCATGATGTCC 1071
Query 1064 CCTACTTCGATTTCTTGAACCGTGTACATGTCGAAGAAAATAAACTCAGATCTTTGGGAT 1123
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 1072 CCTACTTCGATTTCTTGAACCGTGTACAAGTCGAAGAAAACAAACTCAGATCATTGGGGT 1131
Query 1124 TATGGGAACTTCCTCATCCTTGGCTTAACCTCTACGTTCCTAAATCTCGGATTC-TCGAT 1182
|||||||| |||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 1132 TATGGGAAGTTCCTCATCCATGGCTTAACCTCTACGTTCCTAAATCTCGGATTCGT-GAT 1190
Query 1183 TTTCATAACGGTGTTGTCAAAGACATTCTTCTTAAGCAAAAATCAGCTTCGGGACTCGCT 1242
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1191 TTTCATGACGGTGTTGTCAAAGACATTCTTCTTAAGCAAAAAACAGCTTCGGGACTCGCT 1250
Query 1243 CTTCTCTATCCAACAAACCGGAATAAATGGGACAATCGTATGTCGGCGATGATACCAGAG 1302
|| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1251 CTCCTCTATCCCACAAACCGAAATAAATGGGACAATCGTATGTCCGCGATGATACCAGAG 1310
Query 1303 ATCGATGAAGATGTTATATATATTATCGGACTACTACAATCCGCTACCCCAAAGGATCTT 1362
||||||||||||||||| ||||| |||||||| |||||||||||||| ||| || || ||
Sbjct 1311 ATCGATGAAGATGTTATCTATATAATCGGACTGCTACAATCCGCTACGCCACAGAAT-TT 1369
Query 1363 -CCAGAAGTGGAGAGCGTTAACGAGAAGATAATTAGGTTTTGCAAGGATTCAGGTATTAA 1421
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1370 GCCAGAAATGGAGAGCGTTAACGAGGAGATAATTAGGTTTTGCAAGGATTCAGGTATTAA 1429
Query 1422 GATTAAGCAATATCTAATGCATTATACTAGTAAAGAAGATTGGATTGAGCATTTTGGATC 1481
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1430 GATTAAGCAATATCTAATGCATTACACTAGAAAAGAAGATTGGATTGAGCATTTTGGATC 1489
Query 1482 AAAATGGGATGATTTTTCGAAGAGGAAAGATCTATTTGATCCCAAGAAACTGTTATCTCC 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AAAATGGGATGATTTTTCGAAGAGGAAAGATCTATTTGATCCCAAGAAACTGTTATCTCC 1549
Query 1542 AGGGCAAGACATCTTTTGATTAACTTAA 1569
||| |||||||||||||||||||| |||
Sbjct 1550 AGGACAAGACATCTTTTGATTAACGTAA 1577
> Ahg916656 jgi|Araly1|916656|Al_scaffold_0008_1407
Length=1131
Score = 549 bits (297), Expect = 2e-155
Identities = 353/379 (93%), Gaps = 7/379 (2%)
Strand=Plus/Plus
Query 55 ATGGCTAATCTTCGTTTAATGATCAC---TTTAATCACGGTTT-TAAT-GATCACCAAAT 109
||||||||||||||| |||| ||||| ||| || |||| | | || ||||||||
Sbjct 1 ATGGCTAATCTTCGTCTAATAATCACAGTTTTGAT--TTGTTTATTCTCGAGCACCAAAT 58
Query 110 CATCAAACGGTATTAAAATTGATTTACCTAAATCCCTTAACCTCACCCTCTCTACCGATC 169
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 59 CATCAAACGTTATTAAAATTGATTTACCTAAATCCCTTAACCTCACCCTCTCCACTGATC 118
Query 170 CTTCCATCATCTCCGCAGCCTCTCATGACTTCGGAAACATAACCACCGTGACCCCCGGCG 229
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 119 CTTCCATCATCTCCGCCGCCTCTCATGACTTCGGGAACATAACCACCGTGACCCCCGGCG 178
Query 230 GCGTAATCTGCCCCTCCTCCACCGCTGATATCTCTCGTCTCCTCCAATACGCCGCAAACG 289
|||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 179 GCGTTATCTGCCCCTCCTCCTCCGCTGATATATCTCGTCTCCTCCAATACGCCGCGAACG 238
Query 290 GAAAAAGTACATTCCAAGTAGCGGCTCGTGGCCAAGGCCACTCCTTAAACGGCCAAGCCT 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAAAAAGTACATTCCAAGTAGCGGCTCGTGGCCAAGGCCACTCCTTAAACGGCCAAGCCT 298
Query 350 CGGTCTCCGGCGGAGTAATCGTCAACATGACGTGTATCACTGACGTGGTGGTTTCAAAAG 409
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 CGGTCTCCGGCGGAGTAATCGTCAACATGACGTGTCTCACTGACGTGGTGGTTTCAAAAG 358
Query 410 ACAAGAAGTACGCTGACGT 428
|||||||||| ||||||||
Sbjct 359 ACAAGAAGTATGCTGACGT 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5