BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19520.1
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931443 jgi|Araly1|931443|scaffold_303900.1 2699 0.0
Ahg491789 jgi|Araly1|491789|fgenesh2_kg.7__1222__AT4G29730.1 1229 0.0
> Ahg931443 jgi|Araly1|931443|scaffold_303900.1
Length=1572
Score = 2699 bits (1461), Expect = 0.0
Identities = 1529/1563 (98%), Gaps = 0/1563 (0%)
Strand=Plus/Plus
Query 57 agagagagaggaaaatggagagCGACGAAGCAGCAGCAGTGTCTCCTCAAGCAACGACAC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 AGAGAGAGAGGAAAATGGAGAGCGACGAAGCAGCAGCAGTGTCTCCTCAAGCAACGACAC 69
Query 117 CGAGCGGAGGAACCGGAGCTTCTGGGCCGAAGAAGAGAGGTCGGAAACCTAAAACCAAGG 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 70 CGAGCGGAGGAACCGGAGCTTCTGGGCCGAAGAAGAGAGGTCGGAAACCTAAAAGCAAGG 129
Query 177 AAGATTCTCAGACGCCGTCGTCTCAGCAACAGAGCGATGTTAAAATGAAAGAAAGTGGGA 236
| |||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct 130 ACGATTCTCAGACGCCGTCGTCGCAGCAACAGAGCGGTGGCAAAATGAAAGAAAGTGGGA 189
Query 237 AGAAAACGCAGCAGTCGCCGAGTGTTGACGAGAAGTACTCTCAGTGGAAAGGTCTCGTCC 296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 AGAAAACGCAGCAGACGCCGAGTGTTGACGAGAAGTACTCTCAGTGGAAAGGTCTCGTCC 249
Query 297 CCATTCTCTACGACTGGCTCGCTAACCATAACCTCGTCTGGCCTTCACTCTCTTGCAGAT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CCATTCTCTACGACTGGCTCGCTAACCATAACCTCGTCTGGCCTTCACTCTCTTGCAGAT 309
Query 357 GGGGTCCGCAGCTTGAGCAAGCAACCTACAAGAATCGCCAGCGTCTGTACCTCTCAGAGC 416
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 310 GGGGTCCGCAGCTTGAGCAAGCAACCTACAAGAATCGCCAGCGTCTGTATCTCTCAGAGC 369
Query 417 AAACTGATGGAAGTGTGCCCAATACTTTGGTCATAGCAAATTGTGAAGTTGTTAAGCCAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AAACTGATGGAAGTGTGCCCAATACTTTGGTCATAGCAAATTGTGAAGTTGTTAAGCCAA 429
Query 477 GGGTTGCTGCAGCAGAGCACATTTCTCAGTTCAATGAAGAAGCACGTTCTCCATTTGTGA 536
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GGGTCGCTGCAGCAGAGCACATTTCTCAGTTCAATGAAGAAGCACGTTCTCCATTTGTGA 489
Query 537 AGAAGTACAAGACCATCATTCACCCTGGAGAGGTTAACAGAATCAGGGAACTCCCACAGA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AGAAGTACAAGACCATCATTCACCCTGGAGAGGTTAACAGAATCAGGGAACTCCCACAGA 549
Query 597 ATAGTAAGATTGTTGCTACTCACACCGACAGTCCTGATGTTCTCATTTGGGATGTTGAAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 ATAGTAAGATTGTTGCTACTCACACCGACAGTCCTGATGTTCTCATTTGGGATGTTGAAA 609
Query 657 CCCAACCAAACCGTCATGCTGTGCTTGGAGCTGCAAATTCCCGTCCAGATTTGATACTAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CCCAACCAAACCGTCATGCTGTGCTTGGAGCTGCAAATTCCCGTCCAGATTTGATACTAA 669
Query 717 CTGGGCACCAAGATAATGCTGAATTTGCTCTTGCCATGTGCCCAACGGAACCCTTTGTGC 776
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 670 CTGGGCACCAAGATAATGCTGAATTTGCTCTTGCAATGTGCCCAACCGAACCCTTTGTGC 729
Query 777 TCTCCGGAGGCAAGGACAAGTCAGTTGTTTTGTGGAGTATCCAAGATCACATCACAACGA 836
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 730 TCTCTGGAGGCAAGGACAAGTCAGTTGTGTTGTGGAGTATCCAAGATCACATCACAACGG 789
Query 837 TTGGGACAGATTCCAAATCATCTGGATCTATCATCAAACAGACTGGTGAAGGTACTGATA 896
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 790 TTGGGACAGATTCCAAATCTTCTGGATCTATCATCAAACAGACTGGTGAAGGTAGTGATA 849
Query 897 AGAATGAGAGTCCTACTGTTGGCCCACGAGGTGTATATCATGGCCATGAAGATACAGTTG 956
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AGAATGAGAGTCCTACCGTTGGCCCACGAGGTGTATATCATGGCCATGAAGATACAGTTG 909
Query 957 AAGATGTGGCATTCAGCCCGACGAGTGCACAAGAATTCTGCAGTGTTGGTGATGATTCTT 1016
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 AAGATGTGGCATTCAGTCCGACGAGTGCACAAGAATTCTGCAGTGTTGGTGATGATTCTT 969
Query 1017 GCCTTATACTATGGGATGCGAGAACTGGCACAAACCCTGTCACGAAGGTTGAAAAAGCGC 1076
||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||
Sbjct 970 GCCTTATACTATGGGATGCAAGAACTGGCACAAACCCTGTCACTAAGGTTGAGAAGGCGC 1029
Query 1077 ATGATGCTGATCTTCATTGTGTTGATTGGAATCCTCATGACGACAATCTGATCCTGACAG 1136
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1030 ATGATGCTGATCTTCATTGTGTCGATTGGAATCCCCATGACGACAATCTGATCCTGACAG 1089
Query 1137 GGTCAGCAGACAACACTGTCCGGTTGTTTGATCGTAGGAAGCTTACCGCTAATGGAGTTG 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1090 GGTCAGCAGACAACACTGTCCGGTTGTTTGATCGTAGGAAGCTTACCGCTAATGGAGTCG 1149
Query 1197 GTTCGCCTATTTACAAATTTGAGGGACACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTC 1256
| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1150 GGTCACCTATTTACAAATTTGAGGGCCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTC 1209
Query 1257 CTGATAAGTCATCCGTCTTTGGGAGCTCTGCAGAAGATGGTCTCTTGAACATCTGGGATT 1316
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1210 CTGATAAGTCATCTGTCTTTGGGAGCTCTGCAGAAGACGGTCTCTTGAACATCTGGGATT 1269
Query 1317 ATGACAGGGTCAGTAAGAAGTCTGATCGTGCAGCTAAAAGCCCCGCTGGGCTCTTCTTCC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 ATGACAGGGTCAGTAAGAAGTCTGATCGTGCAGCTAAAAGCCCCGCTGGGCTCTTCTTCC 1329
Query 1377 AGCATGCTGGTCACAGGGACAAAGTTGTTGATTTCCACTGGAATGCTTCAGACCCTTGGA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 AGCATGCTGGTCACAGGGACAAAGTTGTTGATTTCCACTGGAATGCTTCAGACCCTTGGA 1389
Query 1437 CTATTGTCAGTGTTTCTGATGACTGTGAGACTACTGGTGGAGGTGGAACATTGCAGATAT 1496
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 CAATTGTCAGTGTTTCTGATGACTGTGAGACTACTGGTGGAGGTGGAACATTGCAGATAT 1449
Query 1497 GGCGGATGAGTGACTTGATTTACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGT 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 GGCGGATGAGTGACTTGATTTACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGT 1509
Query 1557 TCAAGTCGCATGTTATGACTTGTGCCTCCAAGCCTTAAGAGTAAAGAAAACCCATTGTCT 1616
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1510 TCAAGTCGCATGTTTTGACTTGTGCCTCCAAGCCTTAAGAGTAAAGAAAAACCACTGTCT 1569
Query 1617 ATC 1619
|||
Sbjct 1570 ATC 1572
> Ahg491789 jgi|Araly1|491789|fgenesh2_kg.7__1222__AT4G29730.1
Length=1724
Score = 1229 bits (665), Expect = 0.0
Identities = 975/1123 (87%), Gaps = 27/1123 (2%)
Strand=Plus/Plus
Query 509 AATGAAGAAGCACGTTCTCCATTTGTGAAGAAGTACAAGACCATCATTCACCCTGGAGAG 568
|||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 392 AATGAAGAGGCACACTCTCCAACTGTGAAGAAGTACAAGACCATCATCCACCCTGGAGAG 451
Query 569 GTTAACAGAATCAGGGAACTCCCACAGAATAGTAAGATTGTTGCTACTCACACCGACAGT 628
|| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 452 GTCAACAGAATCAGGGAACTCCCACAAAATAGCAAGATTGTAGCTACTCACACCGACAGT 511
Query 629 CCTGATGTTCTCATTTGGGATGTTGAAACCCAACCAAACC-GTCATGCTGTGCTTGGAGC 687
|||||||||||||||||||| ||| || |||||| ||| || ||||||||||||||||
Sbjct 512 CCTGATGTTCTCATTTGGGACACTGAGACTCAACCAGACCGGT-ATGCTGTGCTTGGAGC 570
Query 688 TGCAAATTCCCGTCCAGATTTGATACTAACTGGGCACCAAGATAATGCTGAATTTGCTCT 747
| || |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 571 TCCACATTCTCGTCCAGATTTGTTACTAACTGGGCACCAGGATAATGCTGAATTTGCTCT 630
Query 748 TGCCATGTGCCCAACGGAACCCTTTGTGCTCTCCGGAGGCAAGGACAAGTCAGTTGTTTT 807
||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 631 TGCCATGTGCCCAACCGAACCTTTTGTTCTCTCTGGAGGGAAGGACAAGTCCGTTGTTTT 690
Query 808 GTGGAGTATCCAAGATCACATCACAACGATTGGGACAGATTCCAAATCATCTGGATCTAT 867
||||||||||||||| || ||||||| | ||| || ||||||||||| ||||||| |
Sbjct 691 GTGGAGTATCCAAGACCATATCACAATGGCTGGTACGGATTCCAAATCCCCTGGATCAAG 750
Query 868 CATCAAACAGACTGGTGAAGGTACTGATAAGAA-TGAG-AGTCCTACTGTTGGCCCACGA 925
| |||| |||||||||||||||| | |||| || || | ||||| |||||||||| |||
Sbjct 751 CTTCAAGCAGACTGGTGAAGGTAGTAATAA-AACTG-GTTGTCCTTCTGTTGGCCCTCGA 808
Query 926 GGTGTATATCATGGCCATGAAGATACAGTTGAAGATGTGGCATTCAGCCCGA-CGAGTGC 984
|| |||||||||||||| ||||||||||||||||||||||||||| | || | | |||||
Sbjct 809 GGCGTATATCATGGCCACGAAGATACAGTTGAAGATGTGGCATTCTGTCC-ATCTAGTGC 867
Query 985 ACAAGAATTCTGCAGTGTTGGTGATGATTCTTGCCTTATACTATGGGATGCGAGAACTGG 1044
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 868 ACAAGAATTCTGCAGTGTTGGTGATGATTCTTGCCTAATGCTATGGGATGCAAGAACTGG 927
Query 1045 CACAAACCCTGTCACGAAGGTTGAAAAAGCGCATGATGCTGATCTTCATTGTGTTGATTG 1104
||| |||| || |||||||| || || ||||||||||||||||| ||||| |||||
Sbjct 928 CACTGGTCCTGCCATAAAGGTTGAGAAGGCACATGATGCTGATCTTCACTGTGTCGATTG 987
Query 1105 GAATCCTCATGACGACAATCTGATCCTGACAGGGTCAGCAGACAACACTGTCCG-GTTGT 1163
||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 988 GAATCCTCATGACAACAATCTGATCCTGACCGGGTCAGCAGATAACACTGTCCGTGT-GT 1046
Query 1164 TTGATCGTAGGAAGCTTACCGCTAATGGAGTTGGTTCGCCTATTTACAAATTTGAGGGAC 1223
|||| || | || || ||| | |||||||||||||| ||||||||||||||||| || |
Sbjct 1047 TTGACCGCCGAAACCTGACCTCAAATGGAGTTGGTTCACCTATTTACAAATTTGAAGGCC 1106
Query 1224 ACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAGTCATCCGTCTTTGGGAGCT 1283
|||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |
Sbjct 1107 ACAAGGCTGCTGTTCTTTGTGTTCAGTGGTCTCCTGATAAATCATCTGTGTTTGGGAGTT 1166
Query 1284 CTGCAGAAGATGGTCTCTTGAACATCTGGGATTATGACAGGGTCAGTAAGAAGTCTGATC 1343
| ||||||||||||||||||||||| ||||| ||||| | ||| | ||||||||||| |
Sbjct 1167 CAGCAGAAGATGGTCTCTTGAACATATGGGACTATGATACGGTTGGCAAGAAGTCTGAGC 1226
Query 1344 GTGCAGCTAAAAGCCCC-GCTGGGCTCTTCTTCCAGCATGCTGGTCACAGGGACAAAGTT 1402
||||| | |||| | || |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1227 GTGCACCCAAAA-CTCCTGCTGGGCTTTTCTTCCAGCATGCTGGTCACAGGGACAAA-TT 1284
Query 1403 GTT-GATTTCCACTGGAATGCTTCA--G-ACCCTTGGACTATTGTCAGTGTTTCTGATGA 1458
| | || |||||||||| || || | ||||||||||||||||||||||||||||| |
Sbjct 1285 GGTCGACTTCCACTGGA--GCC-CAATGGACCCTTGGACTATTGTCAGTGTTTCTGATAA 1341
Query 1459 CTGTGAGACTA-CTGGTGGAGGTGGAACATTGCAGATATGGCGGATGAGTGACTTGATTT 1517
||||||| || | ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1342 TTGTGAGAGTAGC-GGTGGAGGTGGTACGTTGCAGATATGGCGGATGAGTGACTTGATTT 1400
Query 1518 ACAGACCAGAAGAAGAAGTCGTGGCAGAATTGGAGAAGTTCAAGTCGCATGTTATGACTT 1577
||||||| ||||| |||||| || |||| | ||||| |||||||| |||||| | || |
Sbjct 1401 ACAGACCGGAAGATGAAGTCCTGACAGAGCTAGAGAAATTCAAGTCACATGTTTTCACAT 1460
Query 1578 GTGCCTCCAAGCCTTAAGAGTAAAGAAAACCCAT--TGTCTAT 1618
|| |||||||||||| || | || | || ||||| |||||||
Sbjct 1461 GTACCTCCAAGCCTTGAG-G-AA-GCAACCCCATCATGTCTAT 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5