BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19530.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480519 jgi|Araly1|480519|fgenesh2_kg.3__3220__AT2G19530.1 1476 0.0
> Ahg480519 jgi|Araly1|480519|fgenesh2_kg.3__3220__AT2G19530.1
Length=1040
Score = 1476 bits (799), Expect = 0.0
Identities = 962/1037 (93%), Gaps = 26/1037 (3%)
Strand=Plus/Plus
Query 78 AAGATACTAAAGAGAGAAAC-ATGAATCAATGTATTGCTTGAGGAATAAGGTAGGGAAGC 136
||||| | |||||||||||| | |||||||| ||||||||||||||||||| ||||||||
Sbjct 26 AAGAT-C-AAAGAGAGAAACGA-GAATCAATCTATTGCTTGAGGAATAAGGCAGGGAAGC 82
Query 137 TAATCAATCACAAGTAGACGAATCGGAGTATTTCATAAAATTAGGGTTTTTAGACCTACA 196
||||||||||| |||||| ||| ||||| ||||||| |||||||||||||||||||||||
Sbjct 83 TAATCAATCACGAGTAGAAGAAACGGAGGATTTCATCAAATTAGGGTTTTTAGACCTACA 142
Query 197 TTTTCTTTTCTTTTT-CCGACGATACTTAAATTGCTCGAGAAACTCTATTAGT-GAGAAA 254
||||||||| ||||| |||||||||||| |||||||||||||||||||| ||| | ||||
Sbjct 143 TTTTCTTTTTTTTTTGCCGACGATACTTTAATTGCTCGAGAAACTCTATAAGTCGCGAAA 202
Query 255 TCCCCCATCGGAATCTCGATGGAATCATCTCCTTCTGGATCCGAACCTCCGCAGAAAGTC 314
| | ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 203 T-CTCCATCGGAA--TCGATGGAATCATCTCCTCCTGGATCCGAACCTCCGCAGAAAGTC 259
Query 315 GTTTCTAAACTGCAGAAAGTAGGCTGGCGAGCTACGATGATCTTCAATCTCGGTTTTGCA 374
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 260 GTTTCTAAACTGCAAAAAGTCGGCTGGCGAGCTACGATGATCTTCAATCTTGGTTTTGCA 319
Query 375 GCTTATATATTTGCGATAAAACGAGAAAAGGACATTGATGCGGACGAGAAGAAGAAAGTT 434
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 320 GCTTATATATTTGCGATAAAACGAGAAAAGGATATTGATGCGGACGAGAAGAAGAAAGTT 379
Query 435 AAAAAGGGCAGCGAGGCTAGACATAAAGGTGTGAAAAAGGGTGCTGTTAACACCGAAATC 494
||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||
Sbjct 380 AAAAAGGGCAGCGAGGCCAGAAATAAAGGTGTGAAAAAGGGTGCTGTTAACACAGAGGTC 439
Query 495 GAGAAGAAAGGTGCAGAAGAAACTGATAAGGCTAAGGAAGCAGAAACTGCAATACCGGAG 554
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 440 GAGAAGAAAGGTGCAGAAGAGACTGATAAGGCTAAGGAAGCAGAAACTGCAGTACCGGAG 499
Query 555 AAGGAAGAAACCAAACTGATCCCTGAACTGGATCCACTGTTTGAATTTACAGATGCAACT 614
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 500 AAGGAAGAAACCAAACCGATCCTTGAACTGGATCCGCTGTTTGAATTTACAGATGCAGCT 559
Query 615 GATCAATCCATGTTTCAAACTGTGGCAACTGAACATGTAAAGGTAGCAAGGAAACCAATT 674
||||| || ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 560 GATCAGTCGGTGTTTCAGACTGTGGCAACTGAACATGTAAAGGTAGCAAGGAAACCGATT 619
Query 675 CCAGAAGATGAGCAAAAGGAGCTTTTCAAGTGGATATTGgaagagaaaaggaagatagaa 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CCAGAAGATGAGCAAAAGGAGCTTTTCAAGTGGATATTGGAAGAGAAAAGGAAGATAGAA 679
Query 735 ccaaaagacagaaaagaaaagaaacaaatcgatgaagagaaagCTATTCTGAAACAGTTC 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CCAAAAGACAGAAAAGAAAAGAAACAAATCGATGAAGAGAAAGCTATTCTGAAACAGTTC 739
Query 795 ATTCGTGCTGAGAGGATTCCAAAACTTCTACCTGATGATTCCGTTGATTCTTCACTTCGT 854
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 740 ATTCGTGCCGAGAGGATTCCCAAACTTCTCCCTGATGATTCCGTTGATTCTTCGCTTCGT 799
Query 855 GATTGGGACAAATTCTTCTCCAAGTAGAACGAATACAGAAACTAGTGTGTACTTGTTTTT 914
||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 800 GATTGGGACAAATTCTTCTCCAAATAGAAAGAAAACAGAAACTAGTGTGTACTTGTTTTT 859
Query 915 TGTTAGTACACCAAATGACCATTGTTGGCTTTTTAGTTTTACTACTCTGATTGTTACTCT 974
||||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||
Sbjct 860 TGTTAGTACACGAAATTATCATTGTTGGCTTTTTAGTTCTACTACTCTGATTGTTACTCT 919
Query 975 AATCAACGAATAGTTTAAATGTGATTTCTTGGGGGTTGAGAGTGGCACTTTTATAAAACT 1034
|||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 920 AATCAACGAATAGTTTAAATGTGATTTCTTGGGG-TT-----T-----T---ATAAAACT 965
Query 1035 TTGGGGTAATGTTT-CTATTTCTTATAATATAAAGGACTTAAAATATAAATTCAATAAAA 1093
|||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 966 TTGGGGTATTGTTTTC-ATTTCTTATAAGATAAAGGACTTAAAG-ATAAATTCAATAAAC 1023
Query 1094 ATAAGGGTGTTTCTGAG 1110
| |||||||||||||||
Sbjct 1024 AGAAGGGTGTTTCTGAG 1040
Score = 65.8 bits (35), Expect = 7e-10
Identities = 40/42 (95%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 24 ATGAGACCGTCAAGATCAGTCAGAGAAGATCAAACGA-AGAA 64
|||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 ATGAGACCGTCAAGATCAGTCAGAGAAGATCAAA-GAGAGAA 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5