BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19550.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906425 jgi|Araly1|906425|Al_scaffold_0003_3553 1057 0.0
> Ahg906425 jgi|Araly1|906425|Al_scaffold_0003_3553
Length=837
Score = 1057 bits (572), Expect = 0.0
Identities = 706/771 (92%), Gaps = 8/771 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCCAACGAAGATCGTGATTCCGAACCGCCGCAACGAGAAGCTCGTGGGTCTGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCCAACGAAGATCGTGATTCCGAACCGCCGCAACGAGAAGCTCGTGGGTCTGCTT 60
Query 61 CACGAAACTGGATCAAAAGAAGTTGTGGTCTTATGCCATGGCTTTAGATCGGAC-AAGAC 119
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 61 CACGAAACCGGATCAAAAGACGTTGTGGTCTTATGCCATGGCTTTAGATCGGACAAAG-C 119
Query 120 CAACAAGATTCTCAAAAACGTGGCTACAGCTTTGGAGAAAGAAAAAATCAGCTCTTTTCG 179
|||||||||||| || || |||||||||||| | |||| |||||||||||||||||||||
Sbjct 120 CAACAAGATTCTGAAGAATGTGGCTACAGCTCTAGAGATAGAAAAAATCAGCTCTTTTCG 179
Query 180 TTTCGATTTCTCTGGTAACGGAGATAGTGAAGGAACTTTCTATTATGGTAACTTCAACAG 239
||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 180 ATTCGATTTCTCCGGCAACGGAGATAGTGAAGGAACTTTTTACTATGGTAACTTCAACAG 239
Query 240 TGAAGCAGAGGATGATCTGCATTACGTTATTCAACACTTGTCCTCCTCTAACATCATGAA 299
||||||||||||||||||||| ||||||||||||||||| ||||| || | ||||||
Sbjct 240 TGAAGCAGAGGATGATCTGCAAAACGTTATTCAACACTTG---TCCTC-AA-A-CATGAA 293
Query 300 CCGTCTAGTTCCTGTCATTCTTGGTCATAGTAAAGGTGGTGATGTCGTTCTTCTCTATGC 359
|||| |||||||||| ||||| |||||||||||||| |||||||| ||| ||||||||||
Sbjct 294 CCGTGTAGTTCCTGTGATTCTAGGTCATAGTAAAGGAGGTGATGTTGTTGTTCTCTATGC 353
Query 360 TTCCAAGTTTCCCGATTATATCCGCAATGTCGTCAATATCTCTGGACGTTTTGATCTTAA 419
||| |||| | |||| ||||||||||||| |||||||| || |||||||||||||| ||
Sbjct 354 TTCAAAGTATGGCGATAATATCCGCAATGTAGTCAATATTTCGGGACGTTTTGATCTAAA 413
Query 420 GAATGATGTGCGTCTCGGAGATGGTTATATAGAAAAGATTAAGGAACAGGGGTTTATTGA 479
||| | ||| ||||| |||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct 414 GAAAGGTGTACGTCTTGGAGATGGTTATATGGAAAAGATCAAGGAACAAGGGTTCATTGA 473
Query 480 TGCTACAGAGGGCAAATCTTGTTTTCGTGTTACTCAAGAGTCTTTAATGGATAGGTTAAA 539
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 474 TGCTACAGAGGGGAAATCTTGTTTCCGTGTTACTCAAGAGTCTTTAATGGATAGGTTAAA 533
Query 540 CACTGATATGCATCAAGCTTGTCTCAATATTGATAAACAATGCAAAGTTTTGACAGTTCA 599
||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 534 CACTGATATGCATGAAGCTTGTCTCAAGATTGATAAAGAATGCAAAGTTTTGACGGTTCA 593
Query 600 TGGTTCGGATGATACCGTGGTACCTGGGGAAGATGCTAAGGAGTTTGCAAAGGTTATACC 659
|||||||||||| || || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 594 TGGTTCGGATGACACGGTTGTACCTGTGGAAGATGCTAAGGAGTTTGCAAAGGTTATACC 653
Query 660 GAATCATAAGCTGGAGATTGTGGAAGGAGCTAATCATGGTTACACCAAACATCAGAAGGA 719
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 654 GAATCATAAGCTGGAGATTGTGGAAGGAGCTAATCATGGTTACACTAAACACCAGAAGGA 713
Query 720 ATTGGTTTCCATAGCGGTGGAGTTTACCAAGACTGCGATTGTTGAACAACA 770
||||||||| |||| |||||||||| |||||||||||||| ||| ||||
Sbjct 714 ATTGGTTTCGATAGTTGTGGAGTTTATAAAGACTGCGATTGTCGAAGAACA 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5