BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19560.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480516 jgi|Araly1|480516|fgenesh2_kg.3__3217__AT2G19560.1 2052 0.0
> Ahg480516 jgi|Araly1|480516|fgenesh2_kg.3__3217__AT2G19560.1
Length=1270
Score = 2052 bits (1111), Expect = 0.0
Identities = 1217/1269 (96%), Gaps = 3/1269 (0%)
Strand=Plus/Plus
Query 23 GAAGACGCAGACGAAGAAGGTGACAATGGCGTACGTTAGTATGGGTGAAGCTCACCGGAG 82
||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1 GAATACGAAGAAGAAGAAGGTAACAATGGCGTACGTTAGTATGGGTGAAGCTCACCGGCG 60
Query 83 AATCACTGAATACCTAAACCGATTCTGCGACGCCGTTTCGTACCAAGActcttctacact 142
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCACTGAATACTTAAACCGTTTCTGCGACGCCGTTTCGTACCAAGACTCTTCTACACT 120
Query 143 ttgccgtctcctctctttctcttccaattctccacctcttctctcactcGCCGACGCACT 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TTGCCGTCTCCTCTCTTTCTCTTCCAATTCTCCACCTCTTCTCTCACTCGCCGACGCAGT 180
Query 203 CAACGTCTTCCAGG---ATTCTAGCAGTTTGATTAGACAGTCTGATAGATTCTCTGAATA 259
|||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CAACGTCTTCCAGGTACATGCTAGCAGTTTGATTAGACAGTCTGATAAATTCTCTGAATA 240
Query 260 TGGCGAGATTCTGGCTCATGTGTTTCGTTCTCTACAAAGTTACCGAGTTGGGAATCTAGT 319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGCGAGATTCTGGCTCATTTGTTTCGTTCTCTACAAAGTTACCGAGTTGGGAATCTAGT 300
Query 320 CGAAGCATACCTTGCTTTCGATAAGTTTGCCAATGCATTTGTTCAGGAGTTTCGTAATTG 379
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGAAGCATACCTCGCTTTCGAGAAGTTTGCCAATGCATTTGTTCAGGAGTTTCGTAATTG 360
Query 380 GGAATCTGCTTGGGCATTGGAAGCTCTGTATGTAGTTTGTTATGAAATTCGAGTTCTTGC 439
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 361 GGAATCTGCTTGGGCATTGGAAGCTCTGTATGTTGTTTGTTATGAAATTCGAATTCTTGC 420
Query 440 GGAAAAGGCTGATAAAGATTTAACTTCTAATGGAAAGTCTCCAGAGAAATTAAAAGCAGC 499
||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 421 GGAAAAGGCTGATAAGGAGTTAACTTCTAATGGAAAATCTCCCGAGAAATTAAAAGCAGC 480
Query 500 TGGGTCTCTTCTCATGAAAGTTTTTGGAGTTCTTGCTGGGAAAGGTCCAAAACGAGTCGG 559
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGATCTCTTCTCATGAAAGTTTTTGGAGTTCTTGCTGGGAAAGGTCCAAAACGAGTCGG 540
Query 560 AGCATTATATGTGACTTGCCAATTGTTCAAGACCTACTTTAAGCTTGGAACCGTCAATCT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCATTATATGTGACTTGCCAATTGTTCAAGACCTACTTTAAGCTTGGAACCGTCAATCT 600
Query 620 TTGTCGAAGTGTAATAAGAAGTATCGAAACTGCTCGGATATTTGACTTTGAGGAGTTTCC 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGTCGAAGTGTAATAAGAAGTATCGAAACTGCTCGGATATTTGACTTTGAGGAGTTTCC 660
Query 680 AAGAAGAGATAAGGTTACATACATGTATTATACCGGCCGATTAGAAGTCTTCAACGAAAA 739
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 AAGAAGAGACAAGGTTACATACATGTATTATACCGGACGATTAGAAGTCTTCAACGAAAA 720
Query 740 TTTTCCTGCTGCTGATACAAAGCTATCATATGCCTTGCAAAATTGCAACCCCAAAAGAGA 799
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 TTTTCCAGCTGCTGATACAAAGCTATCATATGCCTTGCAATATTGCAACCCCAAAAGAGA 780
Query 800 ACGAAATATAAGGATGATATTAAAGTATTTGGTACCGGTGAAGCTTTCTTTAGGAATTAT 859
||| ||||||||||||||||| ||||||||| |||| ||||| ||||| ||||||||||
Sbjct 781 ACGGAATATAAGGATGATATTGAAGTATTTGATACCCGTGAAACTTTCAATAGGAATTAT 840
Query 860 ACCAAAAGATGAGCTCCTGCGAAATTATAATCTGCATGAGTACACAAAGATTGTGCAAGC 919
||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 841 ACCAAAAGACGAGCTCTTGCAAAATTATAATCTGCATGAGTATACAAAGATTGTGCAAGC 900
Query 920 TCTGAGAAAGGGTGATCTAAGGCTTCTCCGGCATGCTCTTCAAGAACATGAAGATCGGTT 979
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCTGAGAAAGGGTGATCTCAGGCTTCTCCGGCATGCTCTTCAAGAACATGAAGATCGGTT 960
Query 980 CTTGAGGTCGGGTGTGTATCTTGTCTTGGAAAAGCTAGAGCTCCAAGTCTACCAGAGACT 1039
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTGAGGTCGGGTGTATATCTTGTCTTGGAAAAGCTAGAGCTCCAAGTCTACCAGAGACT 1020
Query 1040 CATGAAGAAAATTTATATAAACCAGAAGCTGAGTGATCCAGCGAGAGCTCACCAGCTGAA 1099
|||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 1021 CATGAAGAAAATTTATATAATCCAGAAGCAGAGTGACCCAGCGAGAGCTCACCAGCTGAA 1080
Query 1100 GCTTGAAGGGATTGCCAAAGCACTAAGATGGCTAGATATGGACATGGATCTGGACGAGGT 1159
|||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1081 GCTTGAAGTGATTGCCAAAGCACTAAGATGGCTAGAAATGGACATGGATCTCGACGAGGT 1140
Query 1160 GGAATGTATAATGACGATATTGATATACAAAAACCTTGTGAAAGGTTATTTAGCTCACAA 1219
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGAATGTATAATGACGATTTTGATATACAAAAACCTTGTGAAAGGTTATTTAGCTCACAA 1200
Query 1220 GAGCAAAGTGGTAGTTCTAAGCAAGCAAGATCCTTTCCCTAAACTAAACGGGAAGCCTGT 1279
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 1201 GAGCAAAGTGGTAGTTCTAAGCAAGCAAGATCCATTCCCTAAACTTAACGGGAAACCGGT 1260
Query 1280 TAGCTCATA 1288
| |||||||
Sbjct 1261 TGGCTCATA 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5