BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19570.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480515 jgi|Araly1|480515|fgenesh2_kg.3__3216__AT2G19570.1 1696 0.0
> Ahg480515 jgi|Araly1|480515|fgenesh2_kg.3__3216__AT2G19570.1
Length=1169
Score = 1696 bits (918), Expect = 0.0
Identities = 1038/1095 (95%), Gaps = 11/1095 (1%)
Strand=Plus/Plus
Query 1 GCGTAATGTAGTTTCCTACGTTGTTGTATCTATAAATAG-TTTGTTTGTCCAGCATCCAT 59
||||||||||||||| |||| |||| ||||||||||||| ||||||| ||||||||||||
Sbjct 1 GCGTAATGTAGTTTCATACGATGTTCTATCTATAAATAGTTTTGTTTCTCCAGCATCCAT 60
Query 60 TTCATAATTCCTCATTTCCCGGATCTCTCCCATCTAAAAATAACCCGACCCATTTACGCG 119
||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 61 TTCATAA-TCCTTGTTTCCCGGATCTCTCCCATCTCAAAAT---CCGACCCATTTACGCG 116
Query 120 ACCCAAACCGGATCAACCCGCAATGGATAAGCCAAGCTTCGTAATCCAATCCAAAGAAGC 179
|||||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 117 TCCCAAACCGGGTCAACCCGAAATGGATAAGCTAAGCTTCGTAATCCAACCCAAAGAAGC 176
Query 180 AGAATCCGCCGCGAAACAACTCGGCGTTTCCGTCATT-CAGCTCCTCCCGTCGCTAGTCA 238
|||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||
Sbjct 177 TGAATCCGCCGCGAAACAACTCGGCGTCTCCGT-ATTCCAGCTCCTTCCGTCGCTAGTCA 235
Query 239 AACCAGCACAATCCTACGCTCGAACTCCGATTTCGAAATTCAACGTCGCAGTCGTCGGAC 298
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 236 AACCAGCACAATCCTACGCTCGAACTCCGATTTCAAAATTCAACGTCGGAGTCGTCGGAC 295
Query 299 TCGGATCATCAGGTCGGATCTTCTTAGGCGTCAATGTCGAATTCCCAAATCTCCCTCTCC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCGGATCATCAGGTCGGATCTTCTTAGGCGTCAATGTCGAATTCCCAAATCTCCCTCTCC 355
Query 359 ACCACTCAATCCACGCCGAACAGTTCCTCGTCACCAATCTCACACTCAACGGTGAACGTC 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 356 ACCACTCAATCCACGCCGAACAATTCCTCGTCACCAATCTCACACTCAACGGTGAACGTC 415
Query 419 ATCTCAATTTCTTCGCCGTCTCCGCCGCACCATGTGGCCATTGCCGTCAATTCCTCCAAG 478
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 416 ATCTCAAATTCTTCGCCGTCTCCGCCGCACCGTGTGGTCATTGCCGTCAATTCCTCCAAG 475
Query 479 AAATTCGCGACGCACCTGAAATCAAAATCCTTATCACCGATCCAAACAACTCCGCCGATT 538
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 476 AAATCCGCGACGCACCTGAAATCAAAATCCTAATCACCGATCCAAAAAACTCCGCCGATT 535
Query 539 CCGATTCCGCCGCCGATTCAGACGGATTCTTACGTCTCGGAAGCTTCTTGCCACACAGAT 598
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 536 CCGATTCCGCCGCCGATTCAGACGGATTCTTACGTCTCGGAAGCTTCTTACCTCACAGAT 595
Query 599 TCGGTCCCGACGATCTTCTCGGGAAAGATCATCCTCTTCTTCTCGAATCTCACGATAACC 658
||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 596 TCGGTCCCGACGATCTTCTCGAGAAAGATCTTCCTCTTCTTCTCGAACCTCACGATAACC 655
Query 659 ATCTCAAAATCTCAGATCTGGATTCGATTTGTAACGGAAACACCGATTCATCCGCCGATT 718
||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 656 ATCTCAAAATCTCAGATCTCGATTCGATTTGTAACGGAATCACTGATTCATCCGCCGATT 715
Query 719 TGAAACAAACGGCTTTAGCGGCGGCGAATAGATCGTACGCGCCGTATAGTTTATGTCCAT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 716 TGAAACAAACGGCTTTAGCGGCGGCGAATAGATCGTACGCGCCGTATAGTTTATGTCCGT 775
Query 779 CGGGAGTTTCGCTGGTGGATTGTGACGGGAAAGTGTACAGAGGTTGGTATATGGAATCGG 838
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 776 CGGGAGTTTCGTTGGTGGATTGTGACGGGAAAGTGTACAGAGGTTGGTACATGGAATCGG 835
Query 839 CGGCGTATAATCCTAGTATGGGACCAGTACAGGCGGCGTTGGTTGATTATGTGGCTAATG 898
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 836 CGGCGTACAATCCTAGTATGGGACCAGTACAGGCGGCGTTGGTTGATTACGTGGCAAATG 895
Query 899 GTGGTGGAGGAGGATACGAGAGGATCGTCGGAGCGGTTCTGGTGGAGAAAGAAGATGCGG 958
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 896 GTGGTGGAGGAGGTTACGAGAGGATCATCGGAGCGGTTCTGGTGGAGAAAGAAGATGCGG 955
Query 959 TGGTGAGGCAAGAGCACACGGCGAGGTTGTTATTAGAGACTATATCGCCGAAATGCGAAT 1018
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGGTGCGGCAAGAGCACACGGCGAGGTTGTTATTAGAGACTATATCGCCGAAATGCGAAT 1015
Query 1019 TCAAAGTGTTTCATTGCTATGAAGCTTA-GAGAATCA-TTTAATTATCCGaaaaataaag 1076
|||||||||||||||||| || |||||| ||||||| |||||||||| ||| |||||||
Sbjct 1016 TCAAAGTGTTTCATTGCTTTGGAGCTTAAGAGAATCCCTTTAATTATCGGAAGAATAAAG 1075
Query 1077 gaattttaaaaaaaa 1091
||||| ||||||||
Sbjct 1076 GAATT--AAAAAAAA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5