BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19580.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931437 jgi|Araly1|931437|scaffold_303894.1 1367 0.0
> Ahg931437 jgi|Araly1|931437|scaffold_303894.1
Length=854
Score = 1367 bits (740), Expect = 0.0
Identities = 817/854 (96%), Gaps = 6/854 (1%)
Strand=Plus/Plus
Query 117 agagagagaAAATTTAATGGCGTTAGCGAATAACTTAACGGCGATACTCAACTTACTAGC 176
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 AGAGAGACAGAATTTAATGGCGTTAGCGAATAACTTAACGGCGATACTCAACTTACTAGC 64
Query 177 GTTACTCTGTTCCATACCAATAACGGCGTCAGGTATATGGCTAGCTTCAAAGCCAGACAA 236
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 65 GTTACTCTGTTCCATACCAATAACGGCGTCAGGTATATGGCTAGCTTCAAAACCCGACAA 124
Query 237 CGAGTGTGTCAATCTCCTCCGTTGGCCCGTTGTCGTCCTCGGCGTTCTCATCCTCGTCGT 296
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 125 CGAGTGCGTCAATCTCCTCCGTTGGCCCGTCGTCGTCCTCGGCGTCCTCATCCTCGTCGT 184
Query 297 CTCCGCCACAGGCTTCATCGGCGCCTACAAGTACAAGGAAACTCTACTGGCGGTTTACTT 356
||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 185 CTCCGCCACAGGCTTCATCGGCGCCTACAAGTACAAGGAGACTTTACTAGCGGTTTACTT 244
Query 357 GTGCTGTATGGCGATATTGATCGGACTTTTGCTGGTGGTTCTTATATTTGCATTCGTCGT 416
||| |||||||||||| |||||||||||||| |||||||||| |||||||| || |||||
Sbjct 245 GTGTTGTATGGCGATACTGATCGGACTTTTGTTGGTGGTTCTGATATTTGCTTTTGTCGT 304
Query 417 GACCCGGCCCGATGGATCGTATCGGGTTCCGGGTAGAGGTTATAAAGAGTATAGGCTTGA 476
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 305 GACCCGACCCGATGGATCGTATCGGGTTCCGGGTAGAGGTTACAAAGAGTATAGGCTTGA 364
Query 477 AGGGTTCTCGAATTGGCTT-AAGGAGAACGTTGTGGATTCCAAGAACTGGGGAAGGCTAA 535
|||||||||||||||| || |||||||||||||||||||||||||||||||| || |||
Sbjct 365 AGGGTTCTCGAATTGG-TTGAAGGAGAACGTTGTGGATTCCAAGAACTGGGGGAGATTAA 423
Query 536 GGGCTTGTTTGGCTGATACTAA-TGTTTGTCCTAAACTCAACCAAGAATTCATCACCGCC 594
||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 424 GGGCTTGTTTGGCTGATAC-AAGTGTTTGTCCTAAACTCAACCAAGAGTTCATCACCGCC 482
Query 595 GATCAGTTCTTCTCCTCCTCTAAGATCACTCCTCTCCAGTCCGGCTGCTGCAAACCACCA 654
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 483 GATCAGTTCTTCTCCTCCTCTAAGATCACTCCTCTCCAGTCCGGGTGCTGCAAACCACCG 542
Query 655 ACCGCATGTGGCTACAACTTTGTGAACCCAACACTGTGGCTAAATCCAACCAATATGGCT 714
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct 543 ACCGCATGTGGCTACAACTTTGTGAACCCGACACTGTGGCTAAACCCGACGAATATGGCT 602
Query 715 GCAGACGCAGACTGTTACTTATGGAGCAATGACCAAAGCCAGCTTTGTTACAATTGCAAC 774
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GCAGACGCAGACTGTTACCTATGGAGCAATGACCAAAGCCAGCTTTGTTACAATTGCAAC 662
Query 775 TCATGCAAAGCTGGTTTATTGGGAAACCTTAGAAAAGAATGGCGTAAAGCAAATCTCATA 834
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TCATGCAAAGCTGGTCTATTGGGAAACCTTAGAAAAGAATGGCGTAAAGCAAATCTCATA 722
Query 835 CTTATCATCACAGTCGTTGTTCTCATATGGGTTTATGTTATTGCTTGTAGCGCGTTTAGG 894
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CTGATCATCACAGTCGTTGTTCTCATATGGGTTTATGTTATTGCTTGTAGCGCGTTTAGG 782
Query 895 AATGCTCAGACTGAGGATCTCTTCCGCAAATACAAACAAGGTTGGGTCTAAAATGTGTTT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AATGCTCAGACTGAGGATCTCTTCCGCAAATACAAACAAGGTTGGGTCTAAAATGTGTTT 842
Query 955 GTGTCTATAAATTT 968
|||| ||||||||
Sbjct 843 GTGT--ATAAATTT 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5