BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19590.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343239 jgi|Araly1|343239|fgenesh1_pg.C_scaffold_3003002 1480 0.0
Ahg906419 jgi|Araly1|906419|Al_scaffold_0003_3547 514 7e-145
> Ahg343239 jgi|Araly1|343239|fgenesh1_pg.C_scaffold_3003002
Length=933
Score = 1480 bits (801), Expect = 0.0
Identities = 890/934 (95%), Gaps = 2/934 (0%)
Strand=Plus/Plus
Query 149 ATGGTTTTGATCAAagagagagagatggagattccagttattgattttgcagagttggat 208
||||||||||||||||| || |||||||||||||| ||||||||||||| ||| ||||||
Sbjct 1 ATGGTTTTGATCAAAGAAAGGGAGATGGAGATTCCTGTTATTGATTTTGGAGAATTGGAT 60
Query 209 ggagagaagagaAGCAAGACCATGTCACTTCTTGATCATGCATGTGATAAGTGGGGATTC 268
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 GGAGAGAACAGAAGCAAGACCATGTCACTTCTTGATCATGCATGTGATAAGTGGGGCTTT 120
Query 269 TTCATGGTTGATAATCATGGAATTGATAAAGAGTTGATGGAGAAAGTGAAGAAGATGATT 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCATGGTTGATAATCATGGAATTGATAAAGAGTTGATGGAGAAAGTGAAGAAGATGATT 180
Query 329 AACTCTCACTATGAGGAGCATTTGAAAGAGAAGTTTTACCAGTCAGAGATGGTCAAGGCT 388
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 AACTCTTACTATGAGGAGCATTTGAAAGAGAAGTTTTACCAGTCAGAGATGGTCAAAGCT 240
Query 389 TTGAGTGAAGGCAAAACCTCAGATGCAGATTGGGAAAGCAGTTTCTTCATCTCACATAAA 448
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TTGAGTGAAGGCAAAACCTCAGATGCAGATTGGGAAAGCAGTTTCTTCATCTCTCATAAA 300
Query 449 CCAACTTCAAATATCTGTC-AGATCCCAAACATTTCAGAGGAACTCAGCAAGACGATGGA 507
|||||||||||| |||| | |||||| ||||||||||| ||||| ||||||||||||||
Sbjct 301 CCAACTTCAAATTTCTG-CGAGATCCTAAACATTTCAGTGGAACGGAGCAAGACGATGGA 359
Query 508 TGAATATGTTTGTCAACTGCACAAGTTTGCAGAGAGACTCTCCAAGCTCATGTGTGAGAA 567
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 360 TGAATATGTTTGTCAACTGCACAAGTTTGCAGAGAGGCTCTCGAAGCTCATGAGTGAGAA 419
Query 568 TCTTGGTCTTGATCAGGAAGACATAATGAATGCCTTTTCTGGTCCAAAAGGTCCAGCTTT 627
||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||
Sbjct 420 TCTTGGTCTTGATCAAGAATACATAATGAATGCATTTTCTGGTTCAAAAGGTCCAGCTTT 479
Query 628 TGGAACAAAAGTGGCTAAATACCCAGAATGCCCACGTCCTGAGCTTATGAGAGGGCTGAG 687
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 480 CGGAACAAAAGTGGCTAAATACCCAGAATGTCCTCGTCCTGAGCTTATGAGAGGGCTGAG 539
Query 688 AGAACATACGGATGCTGGGGGAATCATATTACTCCTGCAGGATGATCAAGTGCCTGGTCT 747
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 AGAACATACGGATGCTGGTGGAATCATATTACTCCTGCAGGATGACCAAGTGCCTGGTCT 599
Query 748 TGAGTTCTTTAAAGATGGGAAGTGGGTTCCTATACCGCCATCCAAGAACAATACCATTTT 807
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||
Sbjct 600 TGAGTTCTTTAAAGATGGGAAGTGGTTTCCTATACCACCATCCAAGAACAATACCATATT 659
Query 808 TGTCAATACCGGTGATCAACTAGAGATACTGAGTAATGGGAGGTACAAGAGTGTTGTTCA 867
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 660 TGTCAATACCGGTGATCAGCTCGAGATACTGAGTAATGGGAGGTACAAGAGTGTTGTACA 719
Query 868 CCGTGTAATGACAGTGAAGCATGGAAGTAGACTGTCGATTGCTACGTTTTACAATCCGGC 927
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 TCGTGTAATGACATTGAAGCATGGAAGTAGACTTTCGATTGCTACGTTTTACAATCCGGC 779
Query 928 TGGTGATGCCATAATATCTCCAGCTCCAAAGCTCTTGTATCCAAGTGGCTACCGTTTTCA 987
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 TGGTGATGCCATAATATCTCCAGCTCCAAAGCTCTTGTATCCAAGTGGCTACCGGTTTCA 839
Query 988 AGACTACCTAAAGCTTTATTCAACTACCAAGTTTGGAGACAAAGGCCCCAGACTTGAGAC 1047
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 AGACTACCTGAAGCTTTATTCAACTACCAAGTTTGGAGATAAAGGCCCCAGACTTGAGAG 899
Query 1048 CATGAAGAAAATGGGAAATGCGGATTCAGCCTAG 1081
||||||||||||||||||||||||||| ||||||
Sbjct 900 CATGAAGAAAATGGGAAATGCGGATTCGGCCTAG 933
> Ahg906419 jgi|Araly1|906419|Al_scaffold_0003_3547
Length=351
Score = 514 bits (278), Expect = 7e-145
Identities = 323/345 (94%), Gaps = 2/345 (1%)
Strand=Plus/Plus
Query 149 ATGGTTTTGATCAAagagagagagatggagattccagttattgattttgcagagttggat 208
||||||||||||||||||||||||||||||||||| ||||| || |||| ||| ||||||
Sbjct 1 ATGGTTTTGATCAAAGAGAGAGAGATGGAGATTCCTGTTATCGAATTTGGAGAATTGGAT 60
Query 209 ggagagaagagaAGCAAGACCATGTCACTTCTTGATCATGCATGTGATAAGTGGGGATTC 268
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 61 GGAGAGAACAGAAGCAAGACCATGGCACTTCTTGATCATGCATGTGATAAGTGGGGCTTC 120
Query 269 TTCATGGTTGATAATCATGGAATTGATAAAGAGTTGATGGAGAAAGTGAAGAAGATGATT 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCATGGTTGATAATCATGGAATTGATAAAGAGTTGATGGAGAAAGTGAAGAAGATGATT 180
Query 329 AACTCTCACTATGAGGAGCATTTGAAAGAGAAGTTTTACCAGTCAGAGATGGTCAAGGCT 388
||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||
Sbjct 181 AACTCTCACTATGAGGAGCATTTAAAAGAGAAGTGTTACCAGTCAGCGATGGTCAAAGCT 240
Query 389 TTGAGTGAAGGCAAAACCTCAGATGCAGATTGGGAAAGCAGTTTCTTCATCTCACATAAA 448
|||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 241 TTGACTGAAGGCAAAACCTCAGATGCAGATTGGGAAAGCAGTTTCTTCATATCTCACAAG 300
Query 449 CCAACTTCAAATATCTGTC-AGATCCCAAACATTTCAGAGGAACT 492
||||||||||| || || | |||||||||||| ||||||||||||
Sbjct 301 CCAACTTCAAACATATG-CGAGATCCCAAACAATTCAGAGGAACT 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5