BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19600.1
Length=2204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931432 jgi|Araly1|931432|scaffold_303889.1 3061 0.0
Ahg937611 jgi|Araly1|937611|scaffold_501802.1 414 1e-114
Ahg933308 jgi|Araly1|933308|scaffold_401296.1 414 1e-114
> Ahg931432 jgi|Araly1|931432|scaffold_303889.1
Length=1821
Score = 3061 bits (1657), Expect = 0.0
Identities = 1770/1824 (97%), Gaps = 9/1824 (0%)
Strand=Plus/Plus
Query 53 GCTCCGCCGCGCCACATTCACTGAGATGCGGCGGTGTAAAAACAACACTGACAAATTCTC 112
|||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 1 GCTCCGCCGCGCCACAATCACTGAGATGCGGCGGTGTAACAACAACACTGATAAATTCCC 60
Query 113 TGTGATAACGATGAGGcttctaacgcttcttctgatctgtactttcttcttcttcttctC 172
||||| ||||||||||||||| ||||||||||||||||||| | ||||||||| |||
Sbjct 61 TGTGAAAACGATGAGGCTTCTTACGCTTCTTCTGATCTGTA--GT-TTCTTCTTC-TCT- 115
Query 173 CTTTGCTTATTCCGCCGAGTCAGATAACGAGACTGACTCA---GTTGTTACACGTGAGAT 229
| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 116 C-TTGCTTATTCCGCCGAGTCCGATAACGAGACTGACTCAGTTGTTGTTACACGTGAGAT 174
Query 230 CAATGGAACCGTCGTTGAGTCCAATGCCACGAGTGCGAAACCTAGGGAAGATAGTTTCGC 289
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 175 CAATGGAACCGTCGCTGAGTCCAATGCCACGAGTGCGAAACCTAAAGAAGATAGTTTCGC 234
Query 290 TGATATGATCGATCGAGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAGTTCC 349
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TGATATGATCGATCGGGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAGTTCC 294
Query 350 TGATCCAGGAAGCTTCAATAATAGTGTTGCTGATCAGCAGGCGGTTCTAGAGACTGTTGC 409
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 295 TGATCCAGGAAGCTTCAATAATAGTGTTGCTGATCAGCAGGCTGTTCTAGAGACTGTTGC 354
Query 410 ACGAGTTAAGCCAAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATCCTTCTTTAATTT 469
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 355 ACGAGTTAAGCCAAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATCGTTCTTCAATTT 414
Query 470 GGATAACGAGAATGGCGTAGAGGATACTCCAAGACTGATAGATAGGAAGGACAACGTTTT 529
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 415 GGATAGCGAGAATGGCGTAGAAGATACTCCAAGACTGATAGATAGGAAGGACAACGTTTT 474
Query 530 TATAATGTCCAATCCAAAATCCAAGTACCCTGTACTGCAGCTAGATTTAAGGCTGATATC 589
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TATTATGTCCAATCCAAAATCCAAGTACCCTGTACTGCAGCTAGATTTAAGGCTGATATC 534
Query 590 AGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGTGGAATTGCCTTTGCTTGTGCGGG 649
|||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||
Sbjct 535 AGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGAGGAATTGCCTTTGCATGCGCTGG 594
Query 650 TCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTATCATTGGACCGGGCGGGTTAAG 709
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 TCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTATAATTGGACCGGGCGGGTTAAG 654
Query 710 CTTTGTTAGTGAAATGGTGCAGGTCGAAACAGTAGCTCAGTTTGGTGTTATCTTTCTCCT 769
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 655 CTTTGTTAGTGAAATGGTGCAGGTTGAAACAGTAGCTCAGTTTGGTGTTATCTTTCTCCT 714
Query 770 TTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAGCTTCGTGTGGTTCGTGCAGTAGCTAT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAGCTTCGTGTGGTTCGTGCAGTAGCTAT 774
Query 830 TCCAGGAGGTCTTCTTCAGATATTTTTGTTCATGTGCTTGAGTGGAATAACAGCCTCGTT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCCAGGAGGTCTTCTTCAGATATTTTTGTTCATGTGCTTGAGTGGAATAACAGCCTCGTT 834
Query 890 ATGTGGCGGTAAACTAACAGAAGGAATATTCGTAGGCGCATTTCTATCGATGTCATCAAC 949
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 835 ATGTGGCGGTAAACTAACAGAAGGAATATTTGTAGGCGCATTTCTTTCGATGTCATCAAC 894
Query 950 AGCAGTGGTTTTGAAATTTTTAATGGAAAGAAATAGCATAAGTGCTCTACATGGCCAGAT 1009
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 895 AGCAGTGGTTTTGAAATTTTTGATGGAAAGAAATAGCATAAGTGCTCTGCATGGCCAGAT 954
Query 1010 AACTGTAGGAACTCTTATTCTTCAGGATTGTGCTGTGGGCTTGCTGTTTGCTCTCCTGCC 1069
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AACCGTGGGAACTCTTATTCTTCAGGATTGTGCTGTGGGCTTGCTGTTTGCTCTCCTGCC 1014
Query 1070 AGTTCTTGGTGGCACATCTGGTGTCCTTCAAGGAGTGTTGTCCATGGCGAAATCGTTGGC 1129
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1015 AGTTCTTGGTGGCACCTCTGGTGTCCTTCAAGGAGTGTTGTCCATGGCTAAATCGTTGGC 1074
Query 1130 TATTTTGATTGCGTTTTTGGGAGCTTTGTTTGTATTATCCCGTACCTGGGTACCTTGGTT 1189
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1075 TATTTTGATTGCGTTTTTGGGAGCTTTGTTTGTATTGTCCCGTACCTGGGTACCTTGGTT 1134
Query 1190 TCTAAAACTTATGACAAGCCTTTCTTCTCAGACTAATGAGCTCTATCAGTTGGCCGCTGT 1249
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1135 TCTAAAACTTATGACAAGCCTTTCTTCTCAGACTAACGAGCTCTATCAGTTGGCCGCTGT 1194
Query 1250 AGCATTTTGTTTACTTGTCGCTTGGTGTAGTGACAAGCTCGGTCTAAGTCTGGAGTTGGG 1309
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1195 AGCATTTTGTTTACTTGTCGCTTGGTGTAGTGACAAGCTCGGTCTAAGTCTTGAGTTGGG 1254
Query 1310 TTCCTTTGCGGCAGGAGTGATGATCTCAACAACTGATCTCGCTCAGCATACTCTTGAACA 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1255 TTCCTTTGCGGCAGGAGTGATGATCTCAACAACTGATCTCGCTCAGCATACTCTTGAGCA 1314
Query 1370 GGTGGAACCCATCCGCAAtttttttGCAGCACTGTTCCTTGCTAGTATCGGCATGTTGAT 1429
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1315 GGTGGAACCCATCCGCAATTTTTTTGCAGCACTGTTCCTTGCTAGTATTGGCATGTTGAT 1374
Query 1430 ACATATGCACTTCTTGTGGAACCATGTTGACATTCTGCTAGCAGCTGTGTTACTGGTGAT 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 ACATATGCACTTCTTGTGGAACCATGTTGACATTCTGCTAGCAGCTGTGTTACTGGTGAT 1434
Query 1490 AGTGATAAAGACGGTGGTAGTTGCTATCGTTGTTAAAGTCTTTGGATACAATAACAAAAC 1549
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1435 AGTGATAAAGACCGTGGTAGTTGCGATTGTTGTTAAAGTCTTTGGATACAATAACAAAAC 1494
Query 1550 TGCAGTACTTGTTGGTATGTCCCTTGCACAGATTGGGGAATTTGCTTTTGTTCTGCTAAG 1609
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TGCAGTACTTGTTGGAATGTCCCTTGCACAGATTGGGGAATTTGCTTTTGTTCTGCTAAG 1554
Query 1610 TCGAGCATCTAATCTTCACCTAATTGAGAGCAAATTGTACCTCCTGCTTCTGGGAACAAC 1669
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1555 TCGAGCATCTAATCTTCACCTAATTGAGAGCAAATTGTACCTTTTGCTTCTGGGAACAAC 1614
Query 1670 TGCTTTAAGCCTGGTAACAACACCATTGCTATTCAAGTTGATACCAGCAGTTGTACATTT 1729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TGCTTTAAGCCTGGTAACAACACCATTGCTATTCAAGTTGATACCAGCAGTTGTACATTT 1674
Query 1730 AGGAGTGCTCTTACGGTGGTTCTCTCCCGACAGCTCAACCGAGATTGGTTTCAAAGGAGA 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 AGGAGTGCTCTTACGGTGGTTCTCTCCCGACAGCTCAACCGAGATTGGTTTCAAAGGAGA 1734
Query 1790 GTTGTATCACTCAGAGAGTGCAAAGCGTATATCACTGATGATCCAAGGTTCTCTTCACGA 1849
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 GTTGTATCACTCAGAGAGCGCAAAGCGTATATCACTGATGATCCAAGGTTCTCTTCACGA 1794
Query 1850 CTCTTGAAGTGTTGATGGTATGTT 1873
||||||||||||||||| ||||||
Sbjct 1795 CTCTTGAAGTGTTGATGATATGTT 1818
> Ahg937611 jgi|Araly1|937611|scaffold_501802.1
Length=588
Score = 414 bits (224), Expect = 1e-114
Identities = 232/236 (98%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 568 AGCTAGATTTAAGGCTGATATCAGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGTG 627
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 AGCTAGATTTAAGGTTGATATCAGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGTG 332
Query 628 GAATTGCCTTTGCTTGTGCGGGTCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTA 687
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GAATTGCCTTTGCATGTGCTGGTCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTA 392
Query 688 TCATTGGACCGGGCGGGTTAAGCTTTGTTAGTGAAATGGTGCAGGTCGAAACAGTAGCTC 747
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 393 TCATTGGACCGGGCGGGTTAAGCTTTGTTAGTGAAATGGTGCAGGTTGAAACAGTAGCTC 452
Query 748 AGTTTGGTGTTATCTTTCTCCTTTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAG 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AGTTTGGTGTTATCTTTCTCCTTTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAG 508
Score = 185 bits (100), Expect = 1e-45
Identities = 114/121 (94%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 398 AGAGACTGTTGCACGAGTTAAGCCAAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATC 457
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 154 AGAGACTGTTGCTCGAGTTAAGCCTAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATC 213
Query 458 CTTCTTTAATTTGGATAACGAGAATGGCGTAGAGGATACTCCAAGACTGATAGATAGGAA 517
||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 214 GTTCTTCAATTTGGATAATGAGAATGGCGTAGAAGATACTCCGAGACTGATAGATAGGAA 273
Query 518 G 518
|
Sbjct 274 G 274
Score = 169 bits (91), Expect = 1e-40
Identities = 104/110 (95%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 238 CCGTCG-TTGA-GTCCAATGCCACGAGTGCGAAACCTAGGGAAGATAGTTTCGCTGATAT 295
||| || |||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 46 CCGACGATTGAGGTCCAATGCCACGAGTGCCAAACCTAAGGAAGATAGTTTCGCTGATAT 105
Query 296 GATCGATCGAGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAG 345
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 106 GATCGATCGGGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAG 155
> Ahg933308 jgi|Araly1|933308|scaffold_401296.1
Length=587
Score = 414 bits (224), Expect = 1e-114
Identities = 232/236 (98%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 568 AGCTAGATTTAAGGCTGATATCAGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGTG 627
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 AGCTAGATTTAAGGTTGATATCAGATTTGGTCGTCGTCATTGTTTCTGCTACTTGTGGTG 332
Query 628 GAATTGCCTTTGCTTGTGCGGGTCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTA 687
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GAATTGCCTTTGCATGTGCTGGTCAACCGGTCATTACTGGGTATCTATTGGCTGGATCTA 392
Query 688 TCATTGGACCGGGCGGGTTAAGCTTTGTTAGTGAAATGGTGCAGGTCGAAACAGTAGCTC 747
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 393 TCATTGGACCGGGCGGGTTAAGCTTTGTTAGTGAAATGGTGCAGGTTGAAACAGTAGCTC 452
Query 748 AGTTTGGTGTTATCTTTCTCCTTTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAG 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AGTTTGGTGTTATCTTTCTCCTTTTTGCTTTAGGATTAGAATTTTCTGCAGCGAAG 508
Score = 185 bits (100), Expect = 1e-45
Identities = 114/121 (94%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 398 AGAGACTGTTGCACGAGTTAAGCCAAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATC 457
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 154 AGAGACTGTTGCTCGAGTTAAGCCTAAGAAAAATGAAACCAAGACCAAGGAGGAGAAATC 213
Query 458 CTTCTTTAATTTGGATAACGAGAATGGCGTAGAGGATACTCCAAGACTGATAGATAGGAA 517
||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 214 GTTCTTCAATTTGGATAATGAGAATGGCGTAGAAGATACTCCGAGACTGATAGATAGGAA 273
Query 518 G 518
|
Sbjct 274 G 274
Score = 169 bits (91), Expect = 1e-40
Identities = 104/110 (95%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 238 CCGTCG-TTGA-GTCCAATGCCACGAGTGCGAAACCTAGGGAAGATAGTTTCGCTGATAT 295
||| || |||| |||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 46 CCGACGATTGAGGTCCAATGCCACGAGTGCCAAACCTAAGGAAGATAGTTTCGCTGATAT 105
Query 296 GATCGATCGAGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAG 345
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 106 GATCGATCGGGCACTTGAGAAAGAGTTTCCTGATAATGACCAGAACGAAG 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82960553610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5