BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19630.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480507 jgi|Araly1|480507|fgenesh2_kg.3__3208__AT2G19630.2 276 2e-73
> Ahg480507 jgi|Araly1|480507|fgenesh2_kg.3__3208__AT2G19630.2
Length=627
Score = 276 bits (149), Expect = 2e-73
Identities = 313/385 (81%), Gaps = 39/385 (10%)
Strand=Plus/Plus
Query 458 TTTGCTTTGACGTCAGGTCTGAGGAGTTTAGATTTATTATCGGAGCACTGCATCATGGAT 517
|||||||||| |||| |||||||||||||||||| ||||| |||||| || |||||||||
Sbjct 125 TTTGCTTTGATGTCAAGTCTGAGGAGTTTAGATTAATTATTGGAGCAATGTATCATGGAT 184
Query 518 CTCTCATAAACTACAATGGGAAACTAAGTTTGTATCTGCCGTCAACAGTTTATTC---CC 574
||| ||||||||||||| ||||||| ||||||| | | ||| ||| ||| ||
Sbjct 185 TTCTAATAAACTACAATGAGAAACTAGGTTTGTA--T---G---ACA-TTTCTTCTGTCC 235
Query 575 GTTTTAATGGAGTAATAAGAAGTATTAAATTGTGGGTTCTT-GAAGATGCC-AAAAGGCA 632
| ||| |||||||| || ||||||| ||||||||||| || ||||||||| |||| ||
Sbjct 236 G-TTT--TGGAGTAACAACAAGTATTGAATTGTGGGTT-TTAGAAGATGCCGAAAA-ACA 290
Query 633 AGAATGGTCTG-AGCATACATACATATTGCCTGC-A--ATGCATGATATAATGAAAACCA 688
||||||||| | ||||||||||| |||| ||||| | |||||| ||| |||| |||||
Sbjct 291 AGAATGGTC-GAAGCATACATACCTATTTCCTGCGATGTTGCATGGTATGATGAGAACCA 349
Query 689 CAGATTTACGTTGTGTTGGAATGACTCAGACAAAGGAATTTGTCTTCTGGTCGATAAAAG 748
| ||||||| | | || | |||||||||||||| ||| | | || |||
Sbjct 350 CCGATTTAC-----G-T----TG--T---ACAAAGGAATTTGTGTTCCATTTGGTAGAAG 394
Query 749 GTATGCGTTTCTACGTTTTCTACTACAATATCGAAAGAAACACAATCAAAAAGGTTGAAA 808
||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 395 GTAGGCCTTTCTACGTTTTCTACTACAATATCGAGAGAAACACAATCAAAAAGGTTGAAA 454
Query 809 TGCAAGGAATGGAAGCATTTAAAGA 833
|||||||||||||||| ||||||||
Sbjct 455 TGCAAGGAATGGAAGCGTTTAAAGA 479
Score = 169 bits (91), Expect = 4e-41
Identities = 106/113 (94%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 783 AAGAAACACAATCAAAAAGGTTGAAATGCAAGGAATGGAAGCATTTAAAGAGAGTAATG- 841
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 492 AAGAAACACAATCAAAAAGGTTGAAATGCAAGGAATGGAAGCGTTTAAAGATAGTAA-GA 550
Query 842 TTTACACCTTTCTGGATCATGTAGAGGATGTGAAGCTAATGCAATTCTTTTAA 894
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 551 TTTACACCTTTCTAGATCATGTAGAGGATGTGAAGCTTATGCAAATCTTTTAA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5