BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19640.2
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343234 jgi|Araly1|343234|fgenesh1_pg.C_scaffold_3002997 1742 0.0
> Ahg343234 jgi|Araly1|343234|fgenesh1_pg.C_scaffold_3002997
Length=1275
Score = 1742 bits (943), Expect = 0.0
Identities = 1075/1138 (94%), Gaps = 12/1138 (1%)
Strand=Plus/Plus
Query 23 GACGGCGGAGCTAAACCGGAGACGCTGCTTAGGGTTGCAGAAATCGGTGGAAGAGGAAGG 82
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 7 GACGGCGGAGCTAAACCGGAGACACTGCTTAGGGTTGCAGAAATCGGTGGAAGAGGAAGG 66
Query 83 AGTTTGGTGGCGGCACAGTCTCTTCGTGCTGGACAAGTTATCCTCAGAGAGtctcctctc 142
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 67 AGTTTGGTGGCGGCACAGTCTCTTCGTGCTGGACAAGTTATCCTAAGAGAGTCTCCTCTC 126
Query 143 cttctctactctgcttttccatttctctcctcctctgtttctcctTACTGCGACCATTGT 202
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CTCCTCTACTCTGCTTTCCCATTTCTCTCCTCCTCTGTTTCTCCTTACTGCGACCATTGT 186
Query 203 TTCCGTTTGTTAGCTTCATCGGCGCATCAGAAATGTCAATCTTGCTCTCTCGTCTCCTTT 262
||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 187 TTCCGGTTATTAGCTTCATCGGCGCATCATAAATGCCAATCTTGCTCTCTCGTCTCCTTT 246
Query 263 TGTAGCCCTAATTGCTTCGCCTCTCATACTCCTTGGCTCTGCGAATCTCTTCGCCGGCTT 322
|||||||||| |||||| |||||||| |||||||||||||| |||||||||| |||||||
Sbjct 247 TGTAGCCCTAGTTGCTTTGCCTCTCACACTCCTTGGCTCTGTGAATCTCTTCTCCGGCTT 306
Query 323 CACCAATCATCCTCCTCTGCATTCTCCGATCAACCTTCTGATCGTCAAGTCCAAGCTCGT 382
|||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 307 CACC-A--ATCCTCCTCTGCATTCTCAGATCAACCTTCTGATCGCCAAGTCCAAGCTCGT 363
Query 383 TTCCTCCTCTCTGCTTACAATCTCGCCGCTGCTTCTCCTTCTGATTTCCAGATTTTGCTC 442
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTCCTCCTCTCTGCTTACAACCTCGCCGCTGCTTCTCCTTCTGATTTCCAGATTTTGCTC 423
Query 443 TCTCTCCAAGGTAGTGGCAGCAGCAATGGAGATCCTTCTTGTTCTGCGGGTGATTCTGCA 502
|||||||||||||||||| |||||||||||||| |||||| |||||| || ||| |
Sbjct 424 TCTCTCCAAGGTAGTGGCTGCAGCAATGGAGATTCTTCTTCTTCTGC----GA--CTG-A 476
Query 503 GCTGCTGGGTTTCTTCATTCTCTTTTATCTTCCGTGTGTCCATCTCTTCCGGTGTCTATC 562
| |||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 477 --TTCTGGGTTTCTGCATTCTCTTTTATCAGCCGTGTGTCCACCTCTTCCGGTGTGTATC 534
Query 563 TCGCCGGATCTCACGGCGGCTTTACTGTCAAAGGATAAAGTTAACGCCTTTGGTCTGATG 622
|||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 535 TCGCCGGAGCTCACGGCAGCTTTACTGGCTAAGGATAAAGTTAACGCCTTTGGTCTGATG 594
Query 623 GAACCGTGCTCTGTTTCGAATGAGAAAAGATCTGTGCGAGCTTATGGGATTTATCCAAAG 682
||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 595 GAACCGTTCTCTGTTTCGAATGATAAAAGATCAGTGCGAGCTTATGGGATTTATCCGAAG 654
Query 683 ACTTCGTTTTTCAATCATGATTGTCTTCCTAATGCTTGTAGATTCGATTATGTTGACTCT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ACTTCGTTTTTCAATCATGATTGTCTTCCTAATGCTTGTAGATTCGATTATGTTGACTCT 714
Query 743 GCTTCTGATGGTAATACTGATATCATCATTAGGATGATTCATGATGTTCCTGAAGGTAGA 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GCTTCTGATGGTAATACTGATATCATCATTAGGATGATTCATGATGTTCCTGAAGGTAGA 774
Query 803 GAAGTTTGTTTAAGCTACTTCCCTGTGAACATGAACTATTCGAGTAGACAAAAGAGATTG 862
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 775 GAAGTTTGTTTGAGCTACTTCCCTGTGAACATGAACTACTCGAGTAGACAAAAGAGATTG 834
Query 863 CTTGAGGATTACGGTTTTAAGTGTGACTGTGATCGGTGCAAAGTGGAATTTAGTTGGTCT 922
|||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct 835 CTTGAGGATTACGGTTTTAAGTGTGACTGTGATCGGTGTAAAGTTGAATCTAGTTGGTCG 894
Query 923 GAAGGtgaggaagatgagaatgagattatggaagagatggaggatcaagatgaacaagaa 982
|||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||
Sbjct 895 GAAGGTGAGGAAGATGAGAATGAGGTTATGGAAGAGATGGAGAATGAAGATGAAGAAGAA 954
Query 983 gagatggaagatTCAGTAGGTGAGAATGAAGAAGAAGTTTGTGGAAATGGTGTGGATGAT 1042
|||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 955 GAGATGGAGGATTCAGAAGGTGGGAATGTAGAAGAAGTTTGTGGAAATGGTGTGGATGAT 1014
Query 1043 GAATCTAATTTTCCTCATGCTTACTTTTTTGTGAGATATATGTGTGAGAAGGAGAATTGT 1102
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1015 GAATTTAATTTTCCTCATGCTTACTTTTTTGTGAGATATATGTGTGAGAAGGAGAGTTGT 1074
Query 1103 TTTGGCACTCTAGCTCCGCTTCCCCCGAAGACTCATGATGCTTCGAGAGTTCTTGAAT 1160
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1075 TTTGGCACTCTAGCTCCGCTTCCGCCGAAGACTCATGATGCTTCGAGGGTTCTTGAAT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5