BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19670.1
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343233 jgi|Araly1|343233|fgenesh1_pg.C_scaffold_3002996 1679 0.0
Ahg491807 jgi|Araly1|491807|fgenesh2_kg.7__1240__AT4G29510.1 994 0.0
> Ahg343233 jgi|Araly1|343233|fgenesh1_pg.C_scaffold_3002996
Length=1101
Score = 1679 bits (909), Expect = 0.0
Identities = 1042/1106 (94%), Gaps = 10/1106 (1%)
Strand=Plus/Plus
Query 68 ATGACTAGTACGGAGAACAACAACAACGGCTCTGATGAAACTCAGACGACGAAGTTACAC 127
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGACTAGTACGAAGAACAACAACAACGGCTCTGATGAAACTCAGAAGACGAAGTTACAC 60
Query 128 TTCGAGGATGCTGATGAATCAATGCACGATGGAGATGACAACAATGCCGATGTTGCTGAT 187
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 61 TTCGAAGATGCTGATGAATCAATGTACGATGGAGGTGACAACAATGCCGATGTTGCTGAT 120
Query 188 GACATTACCAGCGCCGATTACTACTTCGATTCTTACTCTCATTTCGGTATTCATGAAGAA 247
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GACATAACCAGCGCCGATTACTACTTCGATTCTTACTCTCATTTTGGTATTCATGAAGAA 180
Query 248 ATGTTAAAGGATGTAGTGAGGACAAAGAGTTATCAAGATGTTATTTACAAGAACAAGTTT 307
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 ATGTTAAAAGATGTAGTGAGGACAAAGTGTTATCAAGATGTTATTTACAAGAACAAGTTT 240
Query 308 CTTATCAAGGACAAAATTGTTCTTGATGTTGGAGCTGGAACTGGAATCTTGTCTCTCTTC 367
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 241 CTTATCAAAGACAAGATTGTTCTTGATGTTGGAGCTGGAACTGGAATCTTGTCTTTGTTT 300
Query 368 TGTGCTAAAGCAGGAGCAGCTCACGTTTACGCAGTTGAGTGTTCTCAAATGGCTGACACA 427
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 301 TGTGCTAAAGCAGGAGCAGCTCACGTTTACGCAGTGGAATGTTCTCAAATGGCTGACACC 360
Query 428 GCAAAG-GAGATTGTTAAGTCGAATGGATTCTCAGATGTTATAACGGTTTTGAAAGGGAA 486
|| ||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 361 GC-AAGAGAGATTGTTAAGTCAAATGGATTTTCGGATGTTATAACGGTTTTGAAAGGGAA 419
Query 487 GATTGAGGAGATCGAACTTCCAG-TTCCTAAAGTGGATGTGATTATCTCTGAATGGATGG 545
||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 420 GATTGAGGAAATCGAGCTTCC-GATTCCTAAAGTGGATGTGATTATCTCTGAATGGATGG 478
Query 546 GTTACTTTCTGTTGTATGAAAATATGCTTGACACCGTCTTGTATGCTCGCAATAAATGGC 605
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTTACTTTTTGTTGTATGAAAATATGCTTGACACCGTCTTGTATGCTCGCAATAAATGGC 538
Query 606 TTGTTGATGGTGGAATTGTTCTACCAGATAAAGCTTCTCTT-TATGTTACTGCCATTGAG 664
||||||||||||||| |||| |||| |||||||||||| || ||| |||| ||||| |||
Sbjct 539 TTGTTGATGGTGGAACTGTTTTACCGGATAAAGCTTCT-TTGTATCTTACAGCCATAGAG 597
Query 665 GATGCTCATTATAAAGACGACAAAGTAGAGTTTTGGGACGACGTGTATGGGTTTGACATG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GATGCTCATTATAAAGACGACAAAGTAGAGTTTTGGGACGACGTGTATGGGTTTGACATG 657
Query 725 TCGTGCATCAAGAGAAGAGCAATTACAGAACCGCTTGTTGACACCGTTGATGGTAACCAA 784
|||||||||||||||| ||| ||||| ||||||||||||||||| || || || ||||||
Sbjct 658 TCGTGCATCAAGAGAAAAGCGATTACGGAACCGCTTGTTGACACTGTGGACGGAAACCAA 717
Query 785 ATCGTGACTGATAGCAAGCTGCTGAAGACAATGGATATCTCTAAGATGGCTGCTGGAGAT 844
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 ATCGTGACTGATAGCAAGCTGCTGAAGACAATGGATATCTCTAAGATGGCTTCTGGAGAT 777
Query 845 GCTTCCTTCACAGCTCCGTTTAAGCTCGTCGCACAACGAAATGACCATATCCATGCCCTT 904
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 GCTTCCTTCACAGCTCCATTTAAGCTTGTCGCACAACGAAATGACCATATCCATGCCCTT 837
Query 905 GTAGCCTACTTCGATGTGTCATTCACTATGTGTCACAAGAAGATGGGTTTCTCAACAGGA 964
||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 838 GTAGCCTACTTTGATGTATCATTCACCATGTGCCACAAGAAGATGGGTTTCTCAACAGGA 897
Query 965 CCGAAATCGCGGGCTACGCATTGGAAACAAACTGTGCTGTACCTGGAAGATGTGTTAACC 1024
|| ||||| ||||| || || ||||||||||| ||||||||||||||||||||||| |||
Sbjct 898 CCAAAATCTCGGGCGACACACTGGAAACAAACAGTGCTGTACCTGGAAGATGTGTTGACC 957
Query 1025 ATATGCGAGGGTGAAACAATCACAGGAAGCATGACCAT-TGCACAAAACAAAAAGAATCC 1083
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 958 ATATGCGAGGGTGAAACAATCACAGGAAGCATGACCATAT-CACAAAACAAAAAGAATCC 1016
Query 1084 CAGAGACGTCGACATAAAGCTCAGCTATTCTTTGAACGGCCAACATTGCAATATCTCAAG 1143
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1017 CAGAGACGTCGACATAAAGCTCAGCTATTCTTTGAACGGCCAACATTGCAAGATCTCAAG 1076
Query 1144 GACCCA-CTTCTATAAGATGCGCTAA 1168
||| || || ||| || |||||||||
Sbjct 1077 GACGCAACT-CTACAAAATGCGCTAA 1101
> Ahg491807 jgi|Araly1|491807|fgenesh2_kg.7__1240__AT4G29510.1
Length=1533
Score = 994 bits (538), Expect = 0.0
Identities = 855/1009 (85%), Gaps = 17/1009 (2%)
Strand=Plus/Plus
Query 176 GATGTTGCTGATGACATTACCAGCGCCGATTACTACTTCGATTCTTACTCTCATTTCGGT 235
||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 273 GATGTCACTGATGATACCACCAGCGCCGATTACTACTTCGATTCTTACTCTCACTTCGGA 332
Query 236 ATTCATGAAGAAATGTTAAAGGATGTAGTGAGGACAAAGAGTTATCAAG-ATGTTATTTA 294
|| |||||||| |||||||||||||||||||| || |||| ||||| || ||||||||||
Sbjct 333 ATCCATGAAGAGATGTTAAAGGATGTAGTGAGAACGAAGACTTATC-AGAATGTTATTTA 391
Query 295 -CAAGAACAAGTTTCTTATCAAGGACAAAATTGTTCTTGATGTTGGAGCTGGAACTGGAA 353
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 392 TC-AGAACAAGTTTCTTATCAAGGACAAAATTGTTCTTGATGTTGGAGCTGGAACTGGTA 450
Query 354 TCTTGTCTCTCTTCTGTGCTAAAGCAGGAGCAGCTCACGTTTACGCAGTTGAGTGTTCTC 413
| |||||||| |||||||| || |||||||||||||| || ||||| ||||| ||||| |
Sbjct 451 TTTTGTCTCTGTTCTGTGCCAAGGCAGGAGCAGCTCATGTCTACGCTGTTGAATGTTCGC 510
Query 414 AAATGGCTGACACAGCAAAGGAGATTGTTAA-GTCGAATGGATTCTCAGATGTTATAACG 472
|||||||||||| ||||||||||||||||| | | |||||||| || |||||||| |||
Sbjct 511 AAATGGCTGACATGGCAAAGGAGATTGTTAAAGCC-AATGGATTTTCTGATGTTATTACG 569
Query 473 GTTTTGAAAGGGAAGATTGAGGAGATCGAACTTCC-AGTTCCTAAAGTGGATGTGATTAT 531
|||||||||||||||||||||||||| || ||||| | | ||||||||||||||||||||
Sbjct 570 GTTTTGAAAGGGAAGATTGAGGAGATAGAGCTTCCCACT-CCTAAAGTGGATGTGATTAT 628
Query 532 CTCTGAATGGATGGGTTACTTTCTGTTGTATGAAAATATGCTTG-ACACCGTCTTGTATG 590
||||||||||||||||||||| |||||| |||||||||| ||| | | ||||| || |
Sbjct 629 ATCTGAATGGATGGGTTACTTTTTGTTGTTTGAAAATATG-TTGGATAGTGTCTTATACG 687
Query 591 CTCGCAATAAATGGCTTGTTGATGGTGGAATTGTTCTACCAGATAAAGCTTCTCTTTATG 650
|||| ||||||||||||||||||||||| |||| || ||||| ||||| || || ||
Sbjct 688 CTCGTGATAAATGGCTTGTTGATGGTGGAGTTGTGCTTCCAGACAAAGCCTCCCTGCATC 747
Query 651 TTACTGCCATTGAGGATGCTCATTATAAAGACGACAAAGTAGAGTTTTGGGAC-GACGTG 709
|||| ||||| |||||| | | || ||||| |||||| |||| |||||| || | |||
Sbjct 748 TTACAGCCATAGAGGATTCGGAGTACAAAGAAGACAAAATAGAATTTTGGAACAGT-GTG 806
Query 710 TATGGGTTTGACATGTCGTGCATCAAGAGAAGAGCAATTACAGAACCGCTTGTTGACACC 769
||||| ||||||||||| || ||||||| || ||| || | ||||| |||||||||||
Sbjct 807 TATGGTTTTGACATGTCATGTATCAAGAAAAAAGCTATGATGGAACCACTTGTTGACACA 866
Query 770 GTTGATGGTAACCAAATCGTGACTGATAGCAAGCTGCTGAAGACAATGGATATCTCTAAG 829
|| || ||||||||||| || ||||| | ||| || ||||| ||||| ||||| |||
Sbjct 867 GTCGACCAAAACCAAATCGTTACCGATAGTAGGCTTCTAAAGACCATGGACATCTCAAAG 926
Query 830 ATGGCTGCTGGAGATGCTTCCTTCACAGCTCCGTTTAAGCTCGTCGCACAACGAAATGAC 889
||| || |||| |||||||||||||||||||| |||||||| || |||||||| ||||||
Sbjct 927 ATGTCTTCTGGTGATGCTTCCTTCACAGCTCCCTTTAAGCTTGTTGCACAACGCAATGAC 986
Query 890 CATATCCATGCCCTTGTAGCCTACTTCGATGTGTCATTCACTATGTGTCACAAGAAGATG 949
| ||||| ||||||||||||||||| ||||| || || || ||||| |||||| | ||
Sbjct 987 TACATCCACGCCCTTGTAGCCTACTTTGATGTATCGTTTACCATGTGCCACAAGCTGCTG 1046
Query 950 GGTTTCTCAACAGGACCGAAATCGCGGGCTACGCATTGGAAACAAACTGTGCTGTACCTG 1009
||||||||||||||||||||||| || ||||| || ||||| ||||| || ||||||||
Sbjct 1047 GGTTTCTCAACAGGACCGAAATCCCGAGCTACACACTGGAAGCAAACAGTTCTGTACCTA 1106
Query 1010 GAAGATGTGTTAACCATATGCGAGGGTGAAACAATCACAGGAAGCATGACCATTGCACAA 1069
|||||||||||||||||||| |||||||| |||||||| |||| |||| | || | |
Sbjct 1107 GAAGATGTGTTAACCATATGTGAGGGTGAGACAATCACTGGAACCATGTCTGTTTCTCCT 1166
Query 1070 AACAAAAAGAATCC-CAGAGACGTCGACATAAAGCTCAGCTATTCTTTGAACGGCCAACA 1128
||||| |||||||| | ||||| | ||||||||||| |||||||||||||| ||||| ||
Sbjct 1167 AACAAGAAGAATCCAC-GAGACATTGACATAAAGCTAAGCTATTCTTTGAATGGCCAGCA 1225
Query 1129 TTGCAATATCTCAAGGACCCA-CTTCTATAAGATGCGCTAAAAGCTCTC 1176
|||||| |||||||||||||| | ||| || ||||| |||| | ||||
Sbjct 1226 TTGCAAGATCTCAAGGACCCAACA-CTACAAAATGCGTTAAA-GTTCTC 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50894094195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5