BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19680.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480503 jgi|Araly1|480503|fgenesh2_kg.3__3204__AT2G19680.1 922 0.0
> Ahg480503 jgi|Araly1|480503|fgenesh2_kg.3__3204__AT2G19680.1
Length=599
Score = 922 bits (499), Expect = 0.0
Identities = 568/600 (95%), Gaps = 10/600 (2%)
Strand=Plus/Plus
Query 48 AAGGA-TTTTGGTATTGAAAAATGGCATCAAAATTGGTTCAACTTCAATCAAAGGCATGT 106
||||| ||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 4 AAGGATTTTTGATATAGAAATATGGCATCAAAATTGGTACAACTTCAATCAAAGGCATGT 63
Query 107 CAGGCTTCAAAGTTTGTGGCCAAGCATGGGAATTCGTACTACAAGCAATTGTTGGAGCAG 166
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 64 CAGGCTTCAAAGTTTGTGGCCAAGCATGGGAATTCTTACTATAAGCAATTGTTGGAGCAG 123
Query 167 AACAAGCAATACATCCAAGAGCCTGCAACTATAGAGAAGTGCAGTGAATTGTCTAAACAA 226
|||||||||| | | ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 124 AACAAGCAATTCGTTCAAGAGCCTGCAACTGTAGAGAAGTGCAGTGAATTGTCTAAGCAA 183
Query 227 TTGCTCTACACTCGTCTTGCTAGCATTCCCGGGCGCTACGAAACATTTAGGAAAGAAGTA 286
||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 184 TTGCTCTACACTCGTCTTGCTAGCATTCCCGGGCGTTATGAAACATTTTGGAAAGAAGTA 243
Query 287 GACTACGCAAAGAACTTATTGAAGAACAGAGCGAATCTGAAGGTGGAAGATGCAGGAATC 346
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GACTATGCAAAGAACTTATTGAAGAACAGAGCGAATCTGAAGGTGGAAGATGCAGGAATC 303
Query 347 GCTGCATTGTTTGGCTTAGAATGCTTTGCTTGGTTTTGCGCAGGTGAAATCGTCGGCAGA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCTGCATTGTTTGGCTTAGAATGCTTTGCTTGGTTTTGCGCAGGTGAAATCGTCGGCAGA 363
Query 407 GGATTCACTTTCACCGGCTACTACCCTTGAAATTGAGACAACAAACAACCAGGTCGCCGG 466
|| |||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||
Sbjct 364 GGTTTCACTTTCACCGGCTACTACCCTTGAAATGGAGACAACATACAACAATGTCGCCGG 423
Query 467 AATATTCTTCCTGACGCTTGTAACTCCCTCCATATGATTCCTCACTTGAACTATATATAC 526
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 424 AATATTCTTCCTGACGCTTGTAACTCCCTCCATATGATTCCTCACT-GAACTATATA--C 480
Query 527 TTCCTCGAATCCATTTATATTTTCAGT-TTTTTCCTGAAACAGAA-GTGTTGGAGCTAAG 584
||||||||||||||||||||||||||| ||||||||||||| || || |||||||||||
Sbjct 481 TTCCTCGAATCCATTTATATTTTCAGTATTTTTCCTGAAACC-AATGTTTTGGAGCTAAG 539
Query 585 GGaaaaaaaaa--C-ATTTTGGTAAAGCTCTTAATAAGTTGAGAAAAATGCATTTGATAC 641
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGAAAAAAAAAAACCATTTTGGTAAAGCTCTTAATAAGTTGAGAAAAATGCATTTGATAC 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5