BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19690.2
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480501 jgi|Araly1|480501|fgenesh2_kg.3__3202__AT2G19690.1 771 0.0
Ahg491811 jgi|Araly1|491811|fgenesh2_kg.7__1244__AT4G29460.1 189 2e-47
> Ahg480501 jgi|Araly1|480501|fgenesh2_kg.3__3202__AT2G19690.1
Length=742
Score = 771 bits (417), Expect = 0.0
Identities = 463/485 (95%), Gaps = 4/485 (1%)
Strand=Plus/Plus
Query 1 GGAATCTTTAGCCACAATTTCGAAACCTTAGCGAAGAAGACAACAACGATTTACGAGACG 60
|||| |||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 44 GGAA-CTTTAGCCACAA-TTCGAAACCTTAGCGAAGAAGACAACAGCGATTCACGAGACG 101
Query 61 ACGACGATGATGTTTCGCACTTCATTGATGCGTTTCGCGGCAGCTTTCTTCGCCATTGTC 120
|||||||||||| |||||||||| |||||||||||||| ||||||||||||| | |||||
Sbjct 102 ACGACGATGATGATTCGCACTTCTTTGATGCGTTTCGCCGCAGCTTTCTTCGTCGTTGTC 161
Query 121 TTCGTCGTTCTCGTCGGTGTCGCTCGCAGTGAGGAGTGTACAAGAACTTGCATTGCACAG 180
|||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 162 TTCGTCGTCCTCGTCGGTGTCGTTCGCAGTGAGGAGTGTACAAGAAAGTGCATTGCACAG 221
Query 181 AATTGTGACACTCTTTCTATTCGATATGGGAAGTATTGTGGGATTGGACATTCTGGTTGT 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 222 AATTGTGACACTCTTTCTATTCGATATGGCAAGTATTGTGGGATTGGACATTCTGGATGT 281
Query 241 CCTGGTGAGGAGCCTTGTGATGATCTTGATGCTTGTTGTAAGATCCATGACCA-TTGTGT 299
|||||||||||||||||||||||||||||||||||||||| | ||||||| || ||||||
Sbjct 282 CCTGGTGAGGAGCCTTGTGATGATCTTGATGCTTGTTGTATGGTCCATGA-CAGTTGTGT 340
Query 300 TGAGTTAAACGGTATGACTAACATAAGCTGCCATAAGAAGTTCCAGCGATGCGTAAACAG 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 341 TGAGTTAAACGGTATGACTAACATAAGCTGTCATAAGAAGTTCCAGCGATGCGTAAACAG 400
Query 360 GCTAAGCAAAGCGATAAAACAGTCTAAAAACAAAAAGGTTGGATTTTCCACAAAGTGCCC 419
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 401 GCTAAGCAAAGCGATAAAACAGTCTAAAAACAAAAAGGTCGGCTTTTCCACAAAGTGCCC 460
Query 420 TTATTCAGTAGTCATACCTACGGTGAATCAAGGAATGGATATTGGAATCTTATTCAGTCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TTATTCAGTAGTCATACCTACGGTGAATCAAGGAATGGATATTGGAATCTTATTCAGTCA 520
Query 480 ATTAG 484
|||||
Sbjct 521 ATTAG 525
Score = 191 bits (103), Expect = 7e-48
Identities = 123/133 (92%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 483 AGCTTACCACAGAAAATTTGTTACTGATTGATGATTACCTTATTTATTGCAATTGCAAGT 542
|||||||| |||| ||| ||||||| || ||||||||||| |||||||||||||||||
Sbjct 610 AGCTTACCTCAGATTTTTTTTTACTGACTGGTGATTACCTTAATTATTGCAATTGCAAGT 669
Query 543 TGCTGATAGATTACATGTATGAAGCGATGGTACTACGTGAATCTGTACTATACACAATGC 602
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 670 CGCTGATAGATTACATGTATGAAGCGATGGCACTACGTGAATCTGTACTATACACAATGC 729
Query 603 AAGTTTTGATCGG 615
|||||||||||||
Sbjct 730 AAGTTTTGATCGG 742
> Ahg491811 jgi|Araly1|491811|fgenesh2_kg.7__1244__AT4G29460.1
Length=647
Score = 189 bits (102), Expect = 2e-47
Identities = 256/326 (79%), Gaps = 27/326 (8%)
Strand=Plus/Plus
Query 147 CAGTGAGGAGTGTA-CAAGAACTTGCATTGCACAGAATTGTGACACTCTT-TCTATTCGA 204
||| ||| |||| | ||| || ||||||||||| || || ||| |||| | |||| |
Sbjct 82 CAG-GAGAAGTGCAGCAA-CACCTGCATTGCACAAAACTGCAACAGTCTTGGC-ATTC-A 137
Query 205 -TATGGGAAGTATTGTGGGATTGG--ACATTCTGGTTGTCCTGGTG-AGGAGCCTTGTGA 260
||||||||||| |||||||| || || || ||| |||| || | | | ||||||||
Sbjct 138 CTATGGGAAGTACTGTGGGATAGGTTAC-TT-TGGATGTCGAGGAGAACCA-CCTTGTGA 194
Query 261 TGATCTTGATGCTTGTTGTAAGA-TCCATGACCATTGTGTTGAGTTAAACGGTATGACTA 319
|||||||||||||||||||| || || ||||| |||||||||| ||||| |||||||||
Sbjct 195 TGATCTTGATGCTTGTTGTATGACTC-ATGACAATTGTGTTGATTTAAAAGGTATGACTT 253
Query 320 ACAT-AAGCTGCCATAAGAAGTTCCAGCGATGCGTAAACAGGCTAAGCAAAGCGATAAAA 378
|| | || |||||| ||| ||||| | || |||||||||| |||||| ||| |||| |||
Sbjct 254 ACGTTAA-CTGCCACAAGCAGTTCAAACGTTGCGTAAACAAGCTAAGAAAATCGATTAAA 312
Query 379 C-AGTCTAAAAA-CAAAAAGGTTGGATTTTCCACA-AAGTGCCCTTATTC-AGTAGTCAT 434
| | ||||| ||||| | ||||||| ||||| || ||||||||||| | |||| ||
Sbjct 313 CGA-TCTAACGGTCAAAA-GATTGGATTCTCCACTCAA-TGCCCTTATTCGA-TAGTGAT 368
Query 435 ACCTACGGTGAATCAA-GGAATGGAT 459
||| || ||| |||| |||||||||
Sbjct 369 ACCAACCGTGT-TCAATGGAATGGAT 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25694846058
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5