BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G19700.1

Length=673
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931421 jgi|Araly1|931421|scaffold_303878.1                        418    3e-116


> Ahg931421 jgi|Araly1|931421|scaffold_303878.1
Length=425

 Score =  418 bits (226),  Expect = 3e-116
 Identities = 367/432 (85%), Gaps = 22/432 (5%)
 Strand=Plus/Plus

Query  51   GAGTTTAGGTCCGATCACAATGACTACATACAACGA-GGACAAGATGTGGTCGAATCTCT  109
            |||||||||||||||||||||| | |||||| |||| || ||||||||||||||| ||||
Sbjct  2    GAGTTTAGGTCCGATCACAATGGCAACATACGACGATGG-CAAGATGTGGTCGAAGCTCT  60

Query  110  ATGCATTGGCGAAAGTCGCCGCTATGTTGTATGATGATGAGACA---G-C--G---GCGA  160
            ||||||||||| | ||||| |||||||||||||||||||| |||   | |  |    |||
Sbjct  61   ATGCATTGGCGGATGTCGCGGCTATGTTGTATGATGATGAAACATCGGCCATGTATCCGA  120

Query  161  AACTCTTTGACTTC-ACGGATATCATGAGTACGGAGTTTGATGAAGAAGCTGTAGAAGAT  219
            |||||||||| ||| | |||| |||||| || | ||||||||||||||   |||||||| 
Sbjct  121  AACTCTTTGAATTCGA-GGATCTCATGACTATGAAGTTTGATGAAGAA---GTAGAAGAA  176

Query  220  CGTGCAAAGATGGGAACAACGCCTTCGACCATGACACAAAATCTTAATGAGGTTTCTACT  279
            ||||||||||||||||||||| |||||    ||||||||||||||| ||||| |||||||
Sbjct  177  CGTGCAAAGATGGGAACAACGTCTTCGGTGGTGACACAAAATCTTAGTGAGGCTTCTACT  236

Query  280  TCCTTATCGCTCCTTGACATTGGCGCTGATCCCGTGACGCAAACCCCACAAAACCCGCCA  339
            || |||||||||||||||||||||||||||||||||||||||| ||||||||||||  | 
Sbjct  237  TCTTTATCGCTCCTTGACATTGGCGCTGATCCCGTGACGCAAAACCCACAAAACCCTACT  296

Query  340  GCTTCTTTAAC-TATACTCGTCGATGAAATCTTGGCTGATTCTGAGATGATCGAGA-ATG  397
             |||||| ||| | |||||||||||||||||   |||||  |||||||||| |||| | |
Sbjct  297  TCTTCTTCAACCT-TACTCGTCGATGAAATCAAAGCTGAGGCTGAGATGATGGAGACA-G  354

Query  398  AAGCCGACTCACCAAACCCTAATTCCAAATCTTCGCGCC-TAACAGAATAGCTCGTCCCT  456
            ||| ||||||||||||||||| || ||||||||||  || |||||||||||||| ||| |
Sbjct  355  AAGACGACTCACCAAACCCTAGTTTCAAATCTTCGT-CCATAACAGAATAGCTCTTCCAT  413

Query  457  TTTTAATCGGAG  468
            | ||| ||||||
Sbjct  414  TATTATTCGGAG  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24703650216


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5