BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19710.1
Length=3287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480500 jgi|Araly1|480500|fgenesh2_kg.3__3201__AT2G19710.1 2313 0.0
> Ahg480500 jgi|Araly1|480500|fgenesh2_kg.3__3201__AT2G19710.1
Length=3212
Score = 2313 bits (1252), Expect = 0.0
Identities = 1565/1706 (92%), Gaps = 62/1706 (4%)
Strand=Plus/Plus
Query 65 CCCCGCGAAAAATTCCATTCTTCAGATCATAGATTTGCGTCTGATCTAT-ATAACAAACa 123
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 35 CCCCGCGAAAAATTCCATTCTTCAGATCATAGATTTGCGTCTGATCT-TCATAACAAGC- 92
Query 124 aaaaaaaaaaaaaaCTAATCTATTATTCTAGCTTTTATACCTGATTCGATCAATTTCCGA 183
||||||| || | | || || | ||||| ||||||||||| |||
Sbjct 93 -----CAAAAAAATCT-AGC--TT-TT-T---TTTTA-CCCTGATTCGAT---TTT---- 131
Query 184 GGttttttttGCTAAATTTCGTGTACATGAAGAAGGTGCTTCAAAGAGGTTTTAAGCCTG 243
|||||| || |||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 132 --TTTTTTGTGATAAATTTCGTGTCCATGAAGAAGGTTCTTCAACGAGGTTTTAAGCCTG 189
Query 244 CAAAATGCAAAACAGCTTTGCAAATGGCGAATTCACGCCTGAAGATACTCAAGAACAAGA 303
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 190 CTAAATGCAAAACAGCTCTGCAAATGGCGAATTCACGCCTGAAGATACTCAAGAACAAAA 249
Query 304 AGGAGATTCAGATTAAACAGCTGAGGAGAGAATTAGCTCAATTGCTCGAATCTGGACAAA 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 250 AGGAGATTCAGATTAAACAGCTGAGGAGAGAATTAGCTCAATTGCTCGAATCCGGAC--A 307
Query 364 CCCCTACTGCTAGGATTCGGGTGGAACATGTTGTTAGGGAAGAGAAGACAGTGGCGGCTT 423
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 308 -CCCTACTGCTAGAATTCGGGTGGAACATGTGGTTAGGGAAGAGAAGACAGTGGCTGCTT 366
Query 424 ATGAGCTCATTGGAATATACTGTGAACTTCTTGTTGTTCGTTTAGGTGTTATTGAATCAC 483
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 367 ATGAGCTCATTGGAATATATTGTGAACTTCTTGTTGTTCGTTTGGGTGTTATTGAGTCAC 426
Query 484 AGAAAAATTGCCCCATTGATCTGAAAGAAGCTGTCACAAGTGTCTTGTTTGCTTCCCAGA 543
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 427 AGAAAAACTGCCCCATTGATCTGAAAGAAGCTGTCACAAGTGTCTTGTTTGCTTCACAGA 486
Query 544 GGTTATCAGATGTTCCAGAGCTCTCAGAGATCTTTAAGCAATTCACAACCAAGTATGGCA 603
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 487 GGTTATCAGATGTTCCAGAGCTCTCAGAAATCTTTAAGCAATTCACAACCAAGTATGGGA 546
Query 604 AGGATTTTTCTACCTCTGCTGTTGAGTTGCGTCCGGATTCTGGTGTTAGTCGCCTGTTGG 663
||||||||||||| | ||| ||||||||||||| ||||||||||| ||||| |||||||
Sbjct 547 AGGATTTTTCTACGGCGGCTATTGAGTTGCGTCCTGATTCTGGTGTGAGTCGTCTGTTGG 606
Query 664 TCGAAAAATTGTCTGCCAAAGCCCCTGATGGTCCAACAAAGGTCAAAATTTTGATGGCAA 723
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TGGAAAAATTGTCTGCCAAAGCCCCTGATGGTCCAACAAAGGTCAAAATTTTGATGGCAA 666
Query 724 TCGCTGAGGAGCATAATGTCGTCTGGGAGGCACAATCTTTCGTCGAATCAGATCCAAAAG 783
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 667 TCGCTGAGGAACATAATGTCGTCTGGGAGGCGCAATCTTTCGTTGAATCAGATCCAAAAG 726
Query 784 ATACCGAGTTGTTGAATGGAGCAAACTCGTTTCAGCCAGCGAGTAGTATGAACATGGATT 843
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 727 ATACTGAGTTGTTGAGTGGAGCAAGCTCGTTTCAGCCAGCGAGTAGTATGAACATGGATT 786
Query 844 CATCTATAAACTCGAACAAGGAACAGCCTCCAAACAT-CCATGCTCCAGCTACTGTCAAT 902
||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 787 CATCTATAAACTCAAACAAGGAACAGCCTCCAAACGTCCCA-GCTCCAGCTACTGTCAAT 845
Query 903 GCTCATCATGGATCAAGTGAAAGACATCATTCCCCAGAGAACTCTTATGCAAATGGTGGA 962
||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||
Sbjct 846 GCTTATCATGGATCAAGTGAAAGAAATCATTTCCCAGAGAACTCTTATGCAAATGGGGGA 905
Query 963 AGATCTTCAAGCCGTAGTAATAATGTTACTTCTGGGAAGGCTGATGACTACTATCATTCG 1022
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 906 AGATCTTCAAGCCGTAGCAATAATGTTACTTCTGGGAAGGCTGATGACTACTATCA-TCC 964
Query 1023 AAA-GCGAGACCTTCTCGATCTAGGCCTGATGAAGGAGAATGTAGAAATCCAAATCATGG 1081
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AAATGCGAGACCTTCTCGACCTAGGCCTGATGAAGGAGAATGTAGAAATCCAAATCATGG 1024
Query 1082 CTATG-AGAATTCATCTTCAAGAAATAAGCAGAAATGGGAACCAGAATTTGTTGA-TTCC 1139
||||| | |||||||||||||||| |||| | || ||||| ||||||||||| | ||||
Sbjct 1025 CTATGCA-AATTCATCTTCAAGAACTAAGAATAAGCGGGAAACAGAATTTGTT-AGTTCC 1082
Query 1140 ACAGACGCTGCACG-TGCTGCTGCTGAAGCTGCTGAAAGAGCAAGTTTCGCTGCTAGAGC 1198
||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1083 ACAGATGCTGC-TGAAGCTGCCGCTGAAGCTGCTGAAAGAGCAAGTTTCGCTGCTAGAGC 1141
Query 1199 AGCTGCCGAACTTTCGAACAAAGAAAGGATGACGAGGCAGGATTCCACACAGTCGCATAT 1258
|||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||
Sbjct 1142 AGCTGCCGAACTTTCGAACAAAGAAAGGATGATGAGGCAGGATTCAACAGAGTCGCATAT 1201
Query 1259 ATCCTCTGCATCTGTAAATCTCAGAAACGAGCCTTCACATCGACGTGACAGATCGAATGC 1318
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1202 ATCCTCTGCATCTGTAAATCTCAGAAACGAGCCTTCACATCGACGTAACCGATCGAATGC 1261
Query 1319 ACAAAGAGAAAGTTTTTCTGAAGATCATGTTTCGCCTCGACGAAATGTTAGGA-TGCAGT 1377
|||||| ||||||| ||||||||||||| |||||||| ||||||||||| ||| ||||||
Sbjct 1262 ACAAAGTGAAAGTTATTCTGAAGATCATTTTTCGCCTAGACGAAATGTT-GGAATGCAGT 1320
Query 1378 ATGAAGATATGGACAGAACCAGGCAAGACAGATATGATAGGGCAGA--A--C--AGATTC 1431
|||||||||||||||||||| ||||||| |||||||||| |||||| | | ||||||
Sbjct 1321 ATGAAGATATGGACAGAACCCGGCAAGATAGATATGATAAGGCAGAGGAATCTGAGATTC 1380
Query 1432 CTCCTGTAGATCAGCCATCAGGAAGACATTCCGTGGATAACTCGAGAAATAACGGTTCCT 1491
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1381 CTCCTGTAGATCAGTCATCAGGAAGACATTCCCTGGATAACTCGAGAAATAATGGTTCCT 1440
Query 1492 TTGGTA-----G--AGAGA-A-GCAGCCAAGCCAGGATGAGACGGATATAAATGTTGGTT 1542
|||||| | ||||| | ||||||||| ||||||||||| ||| ||||||||||||
Sbjct 1441 TTGGTAAAAAAGGTAGAGAGAAGCAGCCAAGTCAGGATGAGACAGATTTAAATGTTGGTT 1500
Query 1543 ACTCAGAAGATGTTCACCTCAGGAAGCAGTCAAGTCGGG-TT--TCA--T-CACATTCAC 1596
|||||||||||||||||||||||||||||||||| |||| || ||| | |||||||||
Sbjct 1501 ACTCAGAAGATGTTCACCTCAGGAAGCAGTCAAGCCGGGCTTCATCACATTCACATTCAC 1560
Query 1597 ATTCAAGCAATTATTCTGATGAGAATGACCTTGGCTCAGATTTTATGAAGTCACCAAGCA 1656
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 1561 ATTCAAGCAATTATTCTGATGAGAATGACCTTGCCTCAGATTATATGAAGTCACCGAGCA 1620
Query 1657 TCGTGGAGGAAAACATATTTGCCACTGAATATGATCACCAATCTCAGAGCAGCTTTAAAG 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TCGTGGAGGAAAACATATTTGCCACTGAATATGATCACCAATCTCAGAGCAGCTTTAAAG 1680
Query 1717 ATATAGATTCCCATGATCATGGACAT 1742
||||||||||||||||||||||||||
Sbjct 1681 ATATAGATTCCCATGATCATGGACAT 1706
Score = 2043 bits (1106), Expect = 0.0
Identities = 1397/1532 (91%), Gaps = 41/1532 (3%)
Strand=Plus/Plus
Query 1776 GACTATAGTTCAtttttttATCAACCTAAATTTCATGCGGAAGATAATCATTATCAAGAT 1835
||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1702 GAC-ATAGTTCATTTTTTGATCAACCTAAATTTGATGCGGAAGATAATCATTAT---GAT 1757
Query 1836 GAAATTGATCATGGTGTAGGATTCTCATTGCTTGGCAGCAAAACATCTGCTTCAGCTGCT 1895
||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1758 GAAATTG---A---TGTAGGATTCTCATTGCTTGGCAGCAAAACATCTGCTTCAGCGGCT 1811
Query 1896 TCGTGGAGCTTCAAAGGAGATCATAGTAAGTCC-C--ATGGAAAACACAGCAGCTCGAGC 1952
|||||||||||||||| ||||| |||||||||| | |||||||| ||||||||||||||
Sbjct 1812 TCGTGGAGCTTCAAAGAAGATCTTAGTAAGTCCTCATATGGAAAAAACAGCAGCTCGAGC 1871
Query 1953 TCACAAGTTTTCCAAGAGAACCCAAGTTCCCGATTATTTGATGATGTCTCTACAAGTCCT 2012
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1872 TCACAAGTTTTCCAAGAGAACCTAAGTTCCCCATTATTTGATGATGTCTCTACAAGTCCT 1931
Query 2013 CCGGCTTCTTACCATGAGCCTGACCCACATGCCAAGTTTGACAATTATGGTCCAAACTCA 2072
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1932 CCTGCATCTTACCACGAGCCTGACCCACATGCCAAGTTTGACAATTATGGTCCAAATTCA 1991
Query 2073 GAAAGCGATGGTGATCAGCC----TATAGA--CAAAGTTTCTGGAGATGTACATGAGAGG 2126
|||||||| || |||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1992 GAAAGCGACGGCGATCAGCCAAGGCATAGAGGCAAAGTTTCTGGAGATGTACATGAGAAG 2051
Query 2127 GGGAATCTGACATCTGATCGATCTCACAAATTTAAAGTCTCTGATTCTG-CTGGACACGA 2185
|||| ||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||
Sbjct 2052 GGGATTCTGACATCTGATCGATCTCAGAAATTTAAAGTCTCTGATTCTGAC-GGACAGGA 2110
Query 2186 AGTTTTCCCTTTAGACACAGAAGAACACACAGATAATTCAAGGACACGGGAAGAATCAGA 2245
| ||||||||||||||||||| ||||||| |||||||| |||| || ||||||||||||
Sbjct 2111 ATTTTTCCCTTTAGACACAGAGGAACACAAAGATAATTTGAGGAAACAGGAAGAATCAGA 2170
Query 2246 TTCAGACTCAGAGCCTCAGCTTGGTCTGAGGCTTGGAGCTTTGGCCGGTGGATTTAGGAA 2305
|||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2171 TTCAGAGTCAGAGCCTCAGCTTGGTCTGAGGCTTGGAACTTTGGGCGGTGGATTTAGGAA 2230
Query 2306 CAAAAAGACACTCCCACCCTACAGAATGAGTTCGGCATCGTCCAAGGCTGAAAAGGAATA 2365
||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||||
Sbjct 2231 CAAAAAGACACTCCCACCCTACACAATGAGTTTGGCATCGTCCAAGTCTGAAAAGAAATA 2290
Query 2366 TATCCAAATCGATGATTTTGGTCAGTCTAGCAGAAAAGATCTTTACAGTAAGAAAGCAAG 2425
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291 TATCCAAACCGATGATTTTGGTCAGTCTAGCAGAAAAGATCTTTACAGTAAGAAAGCAAG 2350
Query 2426 CAACACCGAGACAAGACCAAGTTTTATGCCTCCTCATCCATCTTCTAGTGATGAAGACGA 2485
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2351 CAACACCGAGATGAGACCTAGTTTTATGCCTCCTCATCCATCTTCTAGTGATGAAGACGA 2410
Query 2486 CTCAGACATGCAACATCCAGGAAGAACAGAAACAAAATCAGATTCCTTATATAGTCATTC 2545
|||||||||||||| ||||| ||||||| |||||||||| |||||||||| ||||||| |
Sbjct 2411 CTCAGACATGCAACTTCCAGTAAGAACAAAAACAAAATCCGATTCCTTATTTAGTCATGC 2470
Query 2546 CCGTGTCAACCATGATGACTCGGAGGAAGAAAAACTCCCAACACGGTCTTCTTCAAGAAT 2605
||||||||||| ||| |||||||| |||||||||||| |||| || |||||||||||||
Sbjct 2471 CCGTGTCAACCTTGAAGACTCGGATGAAGAAAAACTCTCAACTCGATCTTCTTCAAGAAG 2530
Query 2606 TCAAGAGAGGAGTCATAAGCCATCAACAGGAATAAGGGTTCAGAAGAGAACGAACTTCAA 2665
|||||||||||||| |||||||||||| ||||| || | ||| |||||||| ||||||||
Sbjct 2531 TCAAGAGAGGAGTCGTAAGCCATCAACGGGAATGAGAGATCACAAGAGAACAAACTTCAA 2590
Query 2666 GATGCCAGTTTCAGCATCGTCTGAAGATGAGGAAGAAGTCGAAAGAGAGGCTGCACGCAT 2725
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2591 GACGCCAGTTTCATCATCGTCTGAAGATGAGGAAGAAGTCGAAAGAGAGGCTGCACACAT 2650
Query 2726 CAATGCCAAGCCAAATAAAACAACCGGGTATGGGTTCTCTCTAAGGACAAAGGGCCAATC 2785
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2651 CAATGCCAAGCCAAATAAAACAACCGGGTACGGGTTCTCTCTAAGGACAAAGGGCCAATC 2710
Query 2786 GAAAGCTAATGAGAAACATTCATTACCAGTGACAACGAAGAAAACCGACAAAGAGTCTCA 2845
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2711 GAAAGCTTATGAGAAACATTCTTTACCAGTGACAACGAAGAAAACCGACAAAGAGTCTCA 2770
Query 2846 TGATCAGCCATCTCCAAGG-ACA-G----TAACTTCCAGCCATGTTCCACAAACTGTAAA 2899
||||||||||||||||||| ||| | ||||||| |||| |||| |||||| ||||||
Sbjct 2771 TGATCAGCCATCTCCAAGGCACAAGACAGTAACTTCAAGCCCTGTTTCACAAAGTGTAAA 2830
Query 2900 ATCACCCGATCCAGACACCCCATCCAGGGAGAGGGAGAGAGCTAGTCATGTTCACCCCAA 2959
||||||||||||||| |||||||| | || || ||||||||||||| ||||| |||||
Sbjct 2831 ATCACCCGATCCAGAAACCCCATC-A---AG-GG-AGAGAGCTAGTCACGTTCATCCCAA 2884
Query 2960 CCTCCCAGAATATGACGATATCTTTGCAAGGCTCGGAGCGCTTCGTGCTCCCAGTCGACG 3019
|||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||||
Sbjct 2885 CCTCCCAGAATATGACGATATCTTTGCAAGGCTCGGGGCCCTTCGTGCTCCTAATCGACG 2944
Query 3020 CTGAATCTGCTCATCTTGTCCTTCTGTTCATATATATATTCTTT-CACACGGAAAACAGT 3078
|||| | |||||||||||||| ||||||||||||| |||||||| | ||| || | ||||
Sbjct 2945 CTGAGTATGCTCATCTTGTCCGTCTGTTCATATATTTATTCTTTGC-CACAGAGACCAGT 3003
Query 3079 TCCCCTCATTCTTTACTCTGACTGAATTTGATATTCTTACACGTTATACAGATTGAAGTA 3138
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 3004 CCCCCTCATTCTTTACTCTGACTGAATTTGATATTCTTACACATTATACATATTGAAGCA 3063
Query 3139 GTGGTGTGATTCTGCTTGGTCTTGATTGGTTTTCCTTGTCtttttt-ttttttG-TGTGG 3196
||||||||||||||||||||| |||||||| |||||||||| |||| ||||||| |||||
Sbjct 3064 GTGGTGTGATTCTGCTTGGTCGTGATTGGTGTTCCTTGTCTATTTTATTTTTTGGTGTGG 3123
Query 3197 ATAAACAGAATAGAAAATAACTATTTGCGAAGAGAAAGATTTT-ATAATACCATTCGAAA 3255
||| | ||||||| ||||||||||||||||||| | |||||| |||||| |||||||||
Sbjct 3124 ATACATAGAATAGGAAATAACTATTTGCGAAGA-A--GATTTTTATAATAACATTCGAAA 3180
Query 3256 TGTTGTCATAATAGAAATAAATTTTGTTCTCT 3287
|||||||| ||||||||| |||||||||||||
Sbjct 3181 TGTTGTCACAATAGAAATGAATTTTGTTCTCT 3212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124067687980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5