BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19720.1
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931419 jgi|Araly1|931419|scaffold_303876.1 647 0.0
Ahg491815 jgi|Araly1|491815|fgenesh2_kg.7__1248__AT4G29430.1 420 7e-117
> Ahg931419 jgi|Araly1|931419|scaffold_303876.1
Length=430
Score = 647 bits (350), Expect = 0.0
Identities = 393/414 (95%), Gaps = 1/414 (0%)
Strand=Plus/Plus
Query 63 AAATCGGAA-TTTTCGATCAATGGGGAGGAGAATATTGAACGATGCATTGAGAACGATCG 121
||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 1 AAATCGGAATTTTTCGATCGATGGGGAGGAGAATATTGAACGATGCGTTGAGAACGATTG 60
Query 122 TGAATGCTGAGAAGCGAGGGAAAGCTTCGGTGGAGTTGAAACCTGTCTCTACCGTAATGT 181
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 61 TGAATGCTGAGAAGCGAGGGAAAGCTTCGGTGGAATTGAAGCCTGTCTCTACCGTTATGT 120
Query 182 CTTCGTTTCTCAAAATCATGAAAGAGAAAGGGTACATCAAGAACTTCCAAGTCCATGATC 241
|||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||
Sbjct 121 CTTCGTTTCTCAAAATCATGAAGGAGAAAGGGTACATCAAGAACTTTCAAGTCTATGATC 180
Query 242 CACACAGAGTTGGAAGAATAACTGTTGATCTACAAGGAAGGGTTAATGATTGCAAAGCTC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACACAGAGTTGGAAGAATAACTGTTGATCTACAAGGAAGGGTTAATGATTGCAAAGCTC 240
Query 302 TCACTTATAGGCAGGACGTTAAGGCAAATGAGATCGGGCAATACACAGAACGCACACTTC 361
||||||||||||| ||| | |||||||| || ||||||||||||||||||||||||||||
Sbjct 241 TCACTTATAGGCAAGACCTCAAGGCAAACGAAATCGGGCAATACACAGAACGCACACTTC 300
Query 362 CAACGCGCCAGTGGGGTTATATAGTGATTACAACTCCCGATGGCATTTTGGATCATGAAG 421
|||| ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 301 CAACACGCCAGTGGGGTTATGTAGTGATCACAACTCCCGATGGCATTTTGGACCATGAAG 360
Query 422 AAGCTATTAAACGGAATGTGGGTGGTCAGGTTCTTGGTTTCTTTCATTGAACTG 475
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 361 AAGCTATTAAACGGAATGTTGGTGGTCAGGTTCTTGGCTTCTTTCATTGAACTG 414
> Ahg491815 jgi|Araly1|491815|fgenesh2_kg.7__1248__AT4G29430.1
Length=633
Score = 420 bits (227), Expect = 7e-117
Identities = 339/394 (86%), Gaps = 4/394 (1%)
Strand=Plus/Plus
Query 81 AATGGGGAGGAGAATATTGAACGATGCATTGAGAACGATCGTGAATGCTGAGAAG-CGAG 139
|||||||||||| || ||||||||||| ||||| ||||| |||||||| ||| || ||||
Sbjct 5 AATGGGGAGGAGGATTTTGAACGATGCGTTGAGGACGATTGTGAATGCGGAG-AGACGAG 63
Query 140 GGAAAGCTTCGGTGGAGTTGAAACCTGTCTCTACCGTAATGTCTTCGTTTCTCAAAATCA 199
| ||||||||||||||| | ||||| |||| ||||| |||||||| || || | |||||
Sbjct 64 GAAAAGCTTCGGTGGAGCTCAAACCAATCTCCACCGTTATGTCTTCATTCCTGAGAATCA 123
Query 200 TGAAAGAGAAAGGGTACATCAAGAACTTCCAAGTCCATGATCCACACAGAGTTGGAAGAA 259
|||| |||||||| || ||||||||||| |||||| |||||||||| |||||||| ||||
Sbjct 124 TGAAGGAGAAAGGTTATATCAAGAACTTTCAAGTCTATGATCCACATAGAGTTGGTAGAA 183
Query 260 TAACTGTTGATCTACAAGGAAGGGTTAATGATTGCAAAGCTCTCACTTATAGGCAGGACG 319
|||| |||||||| ||||| ||||||||||| ||||||||||| || |||||||| ||||
Sbjct 184 TAACAGTTGATCTGCAAGGGAGGGTTAATGACTGCAAAGCTCTTACCTATAGGCAAGACG 243
Query 320 TTAAGGCAAATGAGATCGGGCAATACACAGAACGCACACTTCCAACGCGCCAGTGGGGTT 379
||| |||||| ||||| | | ||||||| |||||||| |||||||| || ||||||||||
Sbjct 244 TTAGGGCAAAAGAGATTGAGAAATACACTGAACGCACTCTTCCAACACGTCAGTGGGGTT 303
Query 380 ATATAGTGATTACAACTCCC-GATGGCATTTTGGATCATGAAGAAGCTATTAAACGGAAT 438
|| | || || ||||| ||| ||||| |||||||| ||||||||||| || |||||||||
Sbjct 304 ATGTTGTAATCACAAC-CCCGGATGGAATTTTGGACCATGAAGAAGCAATCAAACGGAAT 362
Query 439 GTGGGTGGTCAGGTTCTTGGTTTCTTTCATTGAA 472
|||||||||||||||||||| |||||| | ||||
Sbjct 363 GTGGGTGGTCAGGTTCTTGGCTTCTTTTACTGAA 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24741773133
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5