BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19730.1
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480498 jgi|Araly1|480498|fgenesh2_kg.3__3199__AT2G19730.2 850 0.0
> Ahg480498 jgi|Araly1|480498|fgenesh2_kg.3__3199__AT2G19730.2
Length=559
Score = 850 bits (460), Expect = 0.0
Identities = 529/562 (94%), Gaps = 6/562 (1%)
Strand=Plus/Plus
Query 1 GCTCCGGCGCCACCATTAAAATCTCTCGATCTCTATCTGCGAAATTTCACGGTAGGTATT 60
||||||||||||||||||||| || || || || |||||||||||||||||| | ||
Sbjct 4 GCTCCGGCGCCACCATTAAAAACTATCTCTCCCTCTCTGCGAAATTTCACGGT---T-TT 59
Query 61 TGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGAAATGGCGACAGTTCCAGGACAATTGATCTGGGAGATCGTGAAGAACAACAACTGTTT 119
Query 121 CTTGGTGAAGCAGTTCGGTAGAGGAAACTCTAAGGTTCAATTCAGCAAGGAGACTAACAA 180
||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 120 CTTGGTGAAACAGTTCGGTAGAGGAAACTCTAAGGTTCTATTCAGCAAGGAGACCAACAA 179
Query 181 CCTCACCAACGTTCACTCTTACAAGCACTCTGGTCTTGCAAACAAAAAGACTGTGACCAT 240
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 TCTCGCCAACGTTCACTCCTACAAGCACTCTGGTCTTGCAAACAAAAAGACTGTGACTAT 239
Query 241 CCAGGCCGCTGACAAGGACCAAGCTGTTGTGCTCGCCACCACCAAGACCAAGAAGCAGAA 300
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 CCAGGCCGCTGACAAGGAACAAGCTGTTGTGCTTGCCACCACCAAGACCAAGAAGCAGAA 299
Query 301 CAAGCCTAAGCTCTCTGTCAACAAGTCTATCCTCAAGAAGGAATTCCCCAGGATGTCAAA 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 CAAGCCTAAGCTCTCTGTCAACAAGTCTATCCTTAAGAAGGAATTCCCCAGGATGTCAAA 359
Query 361 GGCTGTTGCTAACCAGGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACT 420
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 360 GGCTGTTGCTAACCAGGTGGTTGACAACTACTACAGGCCAGACTTGAAGAAAGCTGCTCT 419
Query 421 TGCTAGACTCAGCGCCATCAGCAAAGGTCTCAGGGTTGCCAAGTCCGGTGCCAAGCAAAG 480
|||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 420 TGCTAGACTCAGTGTCATCAGCAAAGGTCTTAGGGTTGCTAAGTCCGGTGCCAAGCAAAG 479
Query 481 AAACAGACAAGCTTAAGCTTCTTCTTTCACAATCTGttttttttGAAGTAAAAGATTTTG 540
|||||||||||||||||||||||||||||| || |||||||| || |||||||||||||
Sbjct 480 AAACAGACAAGCTTAAGCTTCTTCTTTCACTATGTGTTTTTTG-GA-GTAAAAGATTTTG 537
Query 541 TTGAACAGGTTTTATTTAAGTT 562
||||||||||||||||||||||
Sbjct 538 TTGAACAGGTTTTATTTAAGTT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26571673149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5