BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G19740.1

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931417 jgi|Araly1|931417|scaffold_303874.1                        632    0.0  


> Ahg931417 jgi|Araly1|931417|scaffold_303874.1
Length=400

 Score =  632 bits (342),  Expect = 0.0
 Identities = 374/390 (96%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  51   GAGATCGAAGCAAAATGGAGAAAGGAAAGGGAAGAAAGGAAGAGGTCGTGACCAGGGAGT  110
            |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct  7    GAGATCGAAGCAAAATGGAGAAAGGAAAGGGAAGAAAGGAGGAGGTCGTTACCAGAGAGT  66

Query  111  ACACTATCAATCTCCACAGGCGCCTCCATAGCTGCACCTTCAAGAAGAAGGCACCCAATG  170
            ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct  67   ACACTATCAATCTTCACAGGCGCCTCCATAGCTGTACGTTCAAGAAGAAGGCACCCAATG  126

Query  171  CCATTAAAGAGATCAGGAAGTTTGCATTGAAAGCAATGGGAACAAAGGACGTTAGAGTGG  230
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  127  CCATCAAAGAGATCAGGAAGTTTGCATTGAAAGCAATGGGAACAAAGGACGTTAGAGTCG  186

Query  231  ATGTTAAACTCAACAAGCAGATATGGAGCAAAGGTATCCGAGGTCCCCCGAGGAGAATTA  290
            |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct  187  ATGTTAAACTCAACAAGCAGATATGGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAATCA  246

Query  291  GAGTCCGTGTTGCCCGTAAGAGAAACGATGATGAAGATGCCAAGGAAGAGTTCTTCTCCC  350
            |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct  247  GAGTCCGTGTTGCCCGTAAGAGGAACGATGATGAAGATGCCAAGGAAGAGTTTTTCTCAC  306

Query  351  TCGTCACCGTCGCTGAGATTCCGGCTGAAGGATTATCTGGTTTGGGTACTAAGGTCATTG  410
            ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  307  TCGTCACTGTCGCTGAGATTCCGGCTGAAGGATTGTCTGGTTTGGGTACTAAGGTCATTG  366

Query  411  AAGAAGAGGAGTGAAAATTGGTGAATGTAC  440
            ||||||||||||||||||||||||||||||
Sbjct  367  AAGAAGAGGAGTGAAAATTGGTGAATGTAC  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21863152497


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5