BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19750.1
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480494 jgi|Araly1|480494|fgenesh2_kg.3__3195__AT2G19750.1 656 0.0
Ahg889195 jgi|Araly1|889195|Al_scaffold_0007_1181 250 9e-66
Ahg950338 jgi|Araly1|950338|scaffold_802225.1 228 4e-59
> Ahg480494 jgi|Araly1|480494|fgenesh2_kg.3__3195__AT2G19750.1
Length=443
Score = 656 bits (355), Expect = 0.0
Identities = 416/445 (93%), Gaps = 5/445 (1%)
Strand=Plus/Plus
Query 21 GAGCATCGTCGTCTCCAACAGCCAAGAGAAGCAGAAGCTTGAAGAATCTCTGTAATCTAA 80
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1 GAGCATCGTCGTCTCCAACAGCCAAGAG-AGCAGAAGCTTGAAGAATCTCTGTAATCTGA 59
Query 81 AAAATGGGAAAGGTCCACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCT 140
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 60 AAAATGGGAAAGGTCCACGGTTCACTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACGCCT 119
Query 141 AAAGTGGCTAAGCAGGACAAGAAGAAGAAGCCTCGTGGTCGTGCTCATAAGCGTCTGCAA 200
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 AAAGTGGCTAAACAGGACAAGAAGAAGAAGCCTCGTGGTCGTGCTCACAAGCGTCTGCAA 179
Query 201 CACAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCA 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CACAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCA 239
Query 261 TCAGAGAAGTAGATAGAAGAAG---GTTTTACCCTTTTCAGATTTTATGGGATGTTTTTG 317
||||||||||||| | || || ||||||| |||| |||||||||||| |||||||||
Sbjct 240 TCAGAGAAGTAGACAAAAAAAAAATGTTTTACTCTTT-CAGATTTTATGGAATGTTTTTG 298
Query 318 ATATTGTGTCATTAGTTGGTCCAAACTCATCGATATCAAAGTGGTTTAACCTTGGTTATC 377
|||||||| ||||||||||| |||||||||| ||||| |||||||||||| || ||||||
Sbjct 299 ATATTGTGCCATTAGTTGGTACAAACTCATCAATATCCAAGTGGTTTAACTTTCGTTATC 358
Query 378 TACAAATCAGTGGATGTTGTGTCAATTTTCTTGTCAATTTGATTTTTGTTTCTCCTCAGA 437
|||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | ||
Sbjct 359 TACAAATCAGTGGATGTTATGTCAATGTTCTTGTCAATTTGATTTGTGTTTCTCCCCGGA 418
Query 438 TTAGACTTAAGTTCTTGAATTATTG 462
|||||| |||||||||| |||||||
Sbjct 419 TTAGACATAAGTTCTTGGATTATTG 443
> Ahg889195 jgi|Araly1|889195|Al_scaffold_0007_1181
Length=189
Score = 250 bits (135), Expect = 9e-66
Identities = 172/190 (91%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 84 ATGGGAAAGGTCCACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCTAAA 143
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGTAAGGTACACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCGAAA 60
Query 144 GTGGCTAAGCAGGACAAGAAGAAGAAGCCTCGTGGTCGTGCTCATAAGCG-TCTGCAACA 202
||||| |||||||| |||||||||||||| ||||| ||||| || || | | |||||||
Sbjct 61 GTGGCAAAGCAGGATAAGAAGAAGAAGCCACGTGGCCGTGCCCACAAAAGGT-TGCAACA 119
Query 203 CAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCATC 262
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 120 CAATCGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAACTCGTC 179
Query 263 AGAGAAGTAG 272
|||||||||
Sbjct 180 TGAGAAGTAG 189
> Ahg950338 jgi|Araly1|950338|scaffold_802225.1
Length=230
Score = 228 bits (123), Expect = 4e-59
Identities = 173/197 (88%), Gaps = 3/197 (2%)
Strand=Plus/Plus
Query 84 ATGGGAAAGGTCCACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCTAAA 143
||||||||||| || || || |||||||||||||||||||| ||||| || ||||| |||
Sbjct 22 ATGGGAAAGGTTCATGGATCTTTGGCTCGTGCCGGTAAGGTTAGAGGACAAACACC-AAA 80
Query 144 -GTGGCTAAGCAGGACAAGAAGAAGAAGCCTCGTGGTCGTGCTCATAAGCGTCTGCAACA 202
|| || ||||| || ||||||||||||||| | ||||||||||| |||||| |||| ||
Sbjct 81 GGTTGCGAAGCAAGATAAGAAGAAGAAGCCTAGAGGTCGTGCTCACAAGCGTTTGCAGCA 140
Query 203 CAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCATC 262
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||
Sbjct 141 CAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTCGGAAAGAAGAGAGGACCCAACTCTTC 200
Query 263 AGAGAAGTAGATAGAAG 279
|||||||||| |||||
Sbjct 201 TGAGAAGTAGA-AGAAG 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22073168943
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5