BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19760.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480493 jgi|Araly1|480493|fgenesh2_kg.3__3194__AT2G19760.1 1029 0.0
Ahg945086 jgi|Araly1|945086|scaffold_701315.1 388 2e-107
Ahg950332 jgi|Araly1|950332|scaffold_802219.1 272 3e-72
> Ahg480493 jgi|Araly1|480493|fgenesh2_kg.3__3194__AT2G19760.1
Length=754
Score = 1029 bits (557), Expect = 0.0
Identities = 715/785 (91%), Gaps = 36/785 (5%)
Strand=Plus/Plus
Query 1 ATTTCCTTGTCTACACGATCATAAAGCTCACAAAGAGAGAATTGAGAAGAAACAAACTCG 60
||||| |||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1 ATTTCATTGTCTACACGATCATAAAGCTAAC-GA-AGAGAATTGAGAAGAAACAAACTCG 58
Query 61 TCGGAGAATTCAGTACTCGCCGAAGAGGAAGAAGAAGAAGATGTCTTGGCAATCATACGT 120
|||||||||||| ||||| ||| || |||||| ||||||||||| ||||||||||||||
Sbjct 59 TCGGAGAATTCAATACTCACCG--GA-GAAGAATAAGAAGATGTCGTGGCAATCATACGT 115
Query 121 CGATGATCACCTTATGTGTGATGTCGAAGGCAACCATCTCACCGCCGCCGCAATTCTCGG 180
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 116 CGATGATCACCTTATGTGTGATGTCGAAGGCAACAAGCTCACCGCCGCCGCAATTCTCGG 175
Query 181 CCAAGACGGCAGTGTCTGGGCTCAGAGCGCCAAATTTCCTCAGTTGAAGCCTCAAGAAAT 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 176 TCAAGACGGCAGTGTCTGGGCTCAGAGCGACAAATTTCCTCAGTTGAAGCCTCAAGAAAT 235
Query 241 CGATGGAATCAAGAAGGACTTTGAGGAGCCCGGGTTTCTTGCCCCAACCGGACTATTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CGATGGAATCAAGAAGGACTTTGAGGAGCCCGGGTTTCTTGCCCCAACCGGACTATTTCT 295
Query 301 CGGTGGCGAAAAATACATGGTTATCCAAGGTGAACAAGGAGCTGTGATCCGAGGGAAGAA 360
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 TGGTGGCGAAAAATATATGGTTATCCAAGGTGAACAAGGAGCTGTCATCCGAGGGAAGAA 355
Query 361 GGGACCTGGAGGTGTCACTATCAAGAAGACAAACCAAGCTTTGGTCTTTGGCTTCTACGA 420
|||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct 356 GGGACCTGGAGGCGTCACTATCAAGAAGACAAACCAAGCTCTAGTCTTTGGCATCTATGA 415
Query 421 TGAACCAATGACTGGAGGTCAATGCAACTTGGTTGTCGAAAGGCTCGGGGATTACCTTAT 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 416 TGAACCAATGACTGGAGGTCAATGCAACTTGGTTGTGGAAAGGCTCGGGGATTACCTCAT 475
Query 481 CGAGTCTGAACTCTAAAACCAAGGTTTCATTTCAGGTTCTTCTT-AACTAAA--GAGTGT 537
||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 476 CGAGTCTGAACTCTAAA-CCAAGGTTTCGTTTCAGGTTCTTCTTTAACTAAAAAGAGTGT 534
Query 538 CAATGCACTTTTTATTGTGATTGATTGTAATGCTTTCAAACACAAATCATTTGTTACTTT 597
|||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 535 CAATGCCCTTTT-ATTGTGATTGATTGTAATGCTTTCAAACACAA-TCAATTGTTACTTT 592
Query 598 AGAACCAATTGTGATTGATTGGTCTCCTTCGTTACCGAGTTTGAGTTTGTGTGTTCTTGT 657
||||||||||||||||| || | | | ||||| | |||| | |||||
Sbjct 593 AGAACCAATTGTGATTG-TT--T-------G-----G-GTTTG--T--GTGT-T-CTTGT 630
Query 658 AATGACATTTGATCAtcttt-tttct-ccatatgtattgagttttgatttttgtttcttc 715
|||||||||||||||||||| ||||| |||| ||| |||||| |||||||||||||||||
Sbjct 631 AATGACATTTGATCATCTTTATTTCTTCCATTTGTGTTGAGTCTTGATTTTTGTTTCTTC 690
Query 716 atattattactttttcttgAAATGATCTGCTGTTTATGATTTGGGGTTCAAAATATTTTT 775
|| | ||||||||||| ||| |||||||| ||||||||| |||||||||||| ||||||
Sbjct 691 CTACT-TTACTTTTTCTCGAATTGATCTGCGGTTTATGATCTGGGGTTCAAAACATTTTT 749
Query 776 GGTTT 780
|||||
Sbjct 750 GGTTT 754
> Ahg945086 jgi|Araly1|945086|scaffold_701315.1
Length=440
Score = 388 bits (210), Expect = 2e-107
Identities = 360/430 (84%), Gaps = 20/430 (5%)
Strand=Plus/Plus
Query 76 CTCGCCGAAGAGGAAGAAGAAG-AAGATGTCTTGGCAATCATACGTCGATGATCACCTTA 134
||||||| || |||||||||| |||||||| |||||||| ||||||||||| || || |
Sbjct 2 CTCGCCG--GA-GAAGAAGAAGAAAGATGTCGTGGCAATCGTACGTCGATGACCATCTCA 58
Query 135 TGTGTGATGTCGAAGGCAACCATCTC-ACCGCCGCCGCAATTC-TCGGCCAAGACGGCAG 192
|||| || |||||||| ||||| ||| | | |||||| | || | ||||||||||||||
Sbjct 59 TGTGCGAGGTCGAAGGTAACCACCTCAAAC-ACGCCGCCA-TCTTAGGCCAAGACGGCAG 116
Query 193 TGTCTGGGCTCAGAGCGC-CAAATTTCC-TCAGTTGAAGCCTCAAGAAATCG-ATGGAAT 249
|||||||||||||||| | || ||||| ||||||||||||| |||| || | | |||||
Sbjct 117 TGTCTGGGCTCAGAGCTCTCA--TTTCCCTCAGTTGAAGCCTGAAGAGATAGTA-GGAAT 173
Query 250 CAAGAAGGACTTTGAGGA-GCCCGGGTTTCTTGCCCCAACCGGACTATTTCTCGGTGGCG 308
||| || |||||||| || ||| || ||||||||||||||| || ||||| || || |
Sbjct 174 CAACAAAGACTTTGAAGAAGCC-GGACATCTTGCCCCAACCGGGCTTTTTCTTGGCGGTG 232
Query 309 AAAAATACATGGTTATCCAAGGTGAA-CAAGGAGCTGTGATCCGAGGGAAGAAGGGACCT 367
|||| ||||||||| |||||||||| | ||||| || ||||||||||| |||||||||
Sbjct 233 AAAAGTACATGGTTGTCCAAGGTGAGGCT-GGAGCCGTCATCCGAGGGAAAAAGGGACCT 291
Query 368 GGAGGTGTCACTATCAAGAAGACAAAC-CAAGCTTTGGTCTTTGGCTTCTACGATGAACC 426
|| || ||||||||||||||||| | | |||||| | ||||||||| |||| ||||||||
Sbjct 292 GGTGGAGTCACTATCAAGAAGACTA-CTCAAGCTCTAGTCTTTGGCATCTATGATGAACC 350
Query 427 AATGACTGGAGGTCAATGCAACTTGGTTGTCGAAAGGCTCGGGGATTACCTTATCGAGTC 486
||||||||||| |||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 351 GATGACTGGAGGGCAATGCAACTTGGTCGTCGAGAGGCTTGGTGATTACCTTATCGAGTC 410
Query 487 TGAACTCTAA 496
|| ||||||
Sbjct 411 TGGTCTCTAA 420
> Ahg950332 jgi|Araly1|950332|scaffold_802219.1
Length=438
Score = 272 bits (147), Expect = 3e-72
Identities = 344/436 (79%), Gaps = 26/436 (6%)
Strand=Plus/Plus
Query 82 GAAG-AGGAAGAAGAAGAAGATGTCTTGGCA-ATCATACGTCGATGATCACCTT-ATGTG 138
|||| |||||||||| ||||||||| ||||| | | |||||||| ||||| ||| |||||
Sbjct 1 GAAGAAGGAAGAAGACGAAGATGTCGTGGCAGA-CTTACGTCGACGATCA-CTTGATGTG 58
Query 139 TGATG-TCGAAGGCAACCATCTCACCGCCGCCGCAATTCTCGGCCAAGACGGCAGTGTCT 197
|| | || ||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 59 CGACGTTC-AAGGCAACCGCCTCACCGCCGCCGCAATTCTCGGCCAAGACGGCAGCGTCT 117
Query 198 GGGCTCAGAGC-GCCAAATTTCC-TCAGTTGAAGCCTCAAGAAAT-CGATGGAATCAA-G 253
||||||||||| || || ||||| ||||||||||||| | ||||| | | || ||||| |
Sbjct 118 GGGCTCAGAGCAGC-AA-TTTCCCTCAGTTGAAGCCTGAGGAAATTC-AGGGCATCAAAG 174
Query 254 AAGGACTTTGAGGA-GCCCGGGTTTCTTGCCCCAACCGGACTATTTCTCGGTGGCGAAAA 312
| | | ||| | ||| || | ||||||||||| ||| | || || |||||| || |
Sbjct 175 ACG-ATTTT-ACTTCGCCTGGAATACTTGCCCCAACAGGATTGTTCCTTGGTGGC-AACA 231
Query 313 A-TACATGGTTATCCAAGGTGAAC-AAGGAGCTGTGATCCGAGGGAAGAAGGGACCTGGA 370
| |||||||| |||||||| || | || || || || ||||| ||||||||| ||||
Sbjct 232 AGTACATGGTAATCCAAGGAGAGCCAAAT-GCCGTCATTCGAGGAAAGAAGGGAGCTGGT 290
Query 371 GGTGTCACTATCAAGAAGACAAACCAAGCTTTGGTCTTTGGCT-TCTACGATGAACCAAT 429
||||| || |||||||| || | ||||||||| |||||||| | |||| || ||||||||
Sbjct 291 GGTGTTACCATCAAGAAAACCACCCAAGCTTTTGTCTTTGG-TATCTATGAAGAACCAAT 349
Query 430 GACTGGAGGTCAATGCAACTT-GGTTGTCGAAAGGCTCGGGGATTACCTTATCGAGTCTG 488
| || || |||||||| | ||| || || || ||||| || ||||| || || || |
Sbjct 350 GGCTCCTGGACAATGCAA-TACGGTCGTGGAGAGTCTCGGTGACTACCTGATTGAATCGG 408
Query 489 AACTCTAAAAC-CAAG 503
|||| |||| ||||
Sbjct 409 GGCTCTGAAACACAAG 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5