BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19770.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480492 jgi|Araly1|480492|fgenesh2_kg.3__3193__AT2G19770.1 963 0.0
> Ahg480492 jgi|Araly1|480492|fgenesh2_kg.3__3193__AT2G19770.1
Length=671
Score = 963 bits (521), Expect = 0.0
Identities = 629/679 (93%), Gaps = 16/679 (2%)
Strand=Plus/Plus
Query 1 CATACATACGTAGAGAGATCCAAAATACCCAACCTCGCAGAGTAAAAGC---AAA-AAGA 56
||||||||||||||||||| ||||| ||| || | |||||||||||||| ||| ||||
Sbjct 1 CATACATACGTAGAGAGAT-CAAAAAACCTAATCGCGCAGAGTAAAAGCAAAAAAGAAGA 59
Query 57 AGAAGAAATCAGAGAGAATGTCGTGGCAAGCATACGTTGATGAGCATTTGATGTGTGATG 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGAAGAAATCAGAGAGAATGTCGTGGCAAGCATACGTTGATGAGCATTTGATGTGTGATG 119
Query 117 TCGGCGACGGCCAAGGTCACCACCTTACCGCCGCCGCTATCATCGGCCATGATGGTAGCG 176
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 120 TCGGCGACGGCCAAGGTCACCACCTAACCGCCGCCGCTATCATCGGCCATGACGGTAGCG 179
Query 177 TTTGGGCTCAGAGCGCTAATTTTCCTCAGTTCAAACCTCAAGAGATCACAGACATTATGA 236
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TTTGGGCTCAGAGCGCTAATTTTCCTCAGTTCAAACCTCAAGAGATCACGGACATTATGA 239
Query 237 AGGATTTCGATGAGCCTGGTCACCTCGCTCCCACGGG-TATGTTCCTCGCAGGGCTAAAG 295
|||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 240 AGGATTTCGATGAGCCGGGTCATCTCGCTCCCACGGGCT-TGTTCCTCGCAGGGCTAAAG 298
Query 296 TATATGGTCATCCAAGGCGAGCCTAATGCTGTCATCCGTGGCAAGAAGGGAGCTGG-GGG 354
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 TATATGGTAATCCAAGGCGAGCCTAATGCTGTCATCCGTGGCAAGAAGGGAGCTGGAGGG 358
Query 355 AATCACGATCAAGAAAACAGGACAATCAATGGTGTTTGGTCTGTACGAAGAGCCAGTGAC 414
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 359 A-TCACGATCAAGAAAACAGGACAATCAATGGTGTTTGGTTTGTACGAAGAGCCAGTGAC 417
Query 415 TCCAGGACAATGCAACATGGTTGTCGAGAGGTTGGGTGATTACTTGATCGAACAGGGTCT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCCAGGACAATGCAACATGGTTGTCGAGAGGTTGGGTGATTACTTGATCGAACAGGGTCT 477
Query 475 TTGAACCATCTACAATGTTTTATATCTCTTTCTCTATAAATCATTAAACCtttgtttctc 534
|| |||||||||||||| |||| |||||||| |||| | |||| ||||| |||| ||||
Sbjct 478 TTAAACCATCTACAATGCTTTACATCTCTTTTTCTA-AT-TCATAAAACCATTGTCTCTC 535
Query 535 tttttgggttt-tggttttccgtttctataat-ttaattttgggtcttcctggtttctAC 592
||||||||| ||||||| |||| || || ||| ||| ||||||| |||||||||||
Sbjct 536 TTTTTGGGTGCATGGTTTTG-GTTTTTAAAAAATTA-TTTGGGGTCTTTCTGGTTTCTAC 593
Query 593 TTTAGCCAAGTTTAACAGAAAGCTTAAGCCTAAGGTTGCAGATAATAACACTAAGCCTGT 652
||||| |||||||||||||| || ||||||| ||||||||| |||||||| ||||||||
Sbjct 594 CTTAGCAAAGTTTAACAGAAAACTGAAGCCTA-GGTTGCAGACAATAACACAAAGCCTGT 652
Query 653 GTGAAGAAGCCAAGACTTA 671
||||||||||| |||||||
Sbjct 653 GTGAAGAAGCCGAGACTTA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5