BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19780.1
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480491 jgi|Araly1|480491|fgenesh2_kg.3__3192__AT2G19780.1 2571 0.0
Ahg945101 jgi|Araly1|945101|scaffold_701330.1 900 0.0
> Ahg480491 jgi|Araly1|480491|fgenesh2_kg.3__3192__AT2G19780.1
Length=1846
Score = 2571 bits (1392), Expect = 0.0
Identities = 1746/1905 (92%), Gaps = 72/1905 (4%)
Strand=Plus/Plus
Query 38 AGTATAAACTAATACTATCTGGTAATTTGTCGTTTTTAATTATTTCCTTTGTATCAAATT 97
||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1 AGTATTAGCTAATACTATGTGGTAATTTGTCGTTTTTAATAATTTCCTTTGTATCAAA-T 59
Query 98 TGGTCATAATACGCAACAGTAATGTTGTTTTTACGTCGGTCACAATAGTGGTTCAGTTCT 157
||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 60 TGGTCATAACACGCAACAGTGATGTTGTTTTTACGTCGGTCAGAATAGTGGTTCAGTTCT 119
Query 158 TCACATTATTAC-TTTGGTGGAAATGGAATATCAGAAAAATCAACTGATATGACAGACAA 216
||||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 120 TCACATTCTTACTTTTGGTGGAAATGGAATAACAGAAAAATCAACTGATAGGACAGACAA 179
Query 217 ATATTATGA-TAGC-AAATCGGAGTCAGTGGAAAGTGG-AACGTGGA-AACACTA-ATAT 271
||||||||| |||| |||||||||||| |||||||||| ||| | | | || | |
Sbjct 180 ATATTATGATTAGCAAAATCGGAGTCAATGGAAAGTGGAAAC----ACATTATTATTTTT 235
Query 272 TAGT-AGGTTCTTTAACaaaaaaaGTCGATACAAGAATCCTCTGAACACAGAAGTTGATG 330
| | ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||
Sbjct 236 TTTTCAGGTTCTTTAACAAAAAAA-TCGAGACACGAATCCTCTGAACACAGCAGTTGATG 294
Query 331 AATTATAGCACGAGGCCATTGGAAAAAATAAAACCTAAGTTGAAAACAAAACAGTAACGG 390
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 295 AATTATAGCACGAAGCCATTGAAAAAAATAAAACCTAAGTTGAAAACAAAACAGTAACTG 354
Query 391 AGAAGCAAAACTCCATCAATCAAACCCATTGCCCCCACATTTGCTGCTAATCATCAATCA 450
||||||||||||||||||||| || | | | |||| | |||||||||||
Sbjct 355 AGAAGCAAAACTCCATCAATC-AA---A-------C-C---TGCT-C--ATCATCAATCA 396
Query 451 ATGCTTCAACCACACTTTTGTTAACAAACCTCATTAATCCAACAAAAGTTTCAACATTCC 510
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 ATGCTTCAACGACACTTTTGTTAACAAACCTCATTAATCCAACAAAAGTTTCAACATTCC 456
Query 511 CCAAGAAGAAAAGACAGCAACTTTAATCAAAGCTTCTCGAGTTTGTTGAGTATCAAAAAG 570
|||||||||||||||||||||||||||| |||| | || |||||||||||||||
Sbjct 457 CCAAGAAGAAAAGACAGCAACTTTAATC-AAGC-T-TC-------TTGAGTATCAAAAAG 506
Query 571 CAAAACAAGAATCATGAAGAAGAAAGGCACCAACAACAACAACTTTAGCCTTCTGTCTTT 630
|||||||||||| |||||||||||||||| | | | || ||||||||||| ||||| ||
Sbjct 507 CAAAACAAGAATGATGAAGAAGAAAGGCA-C--C-A-AA-AACTTTAGCCTCCTGTCGTT 560
Query 631 GTCTCTGTTCCTGAATTGTTTGATTCTAACAAACGGATACAGCATTGGAGTCGGAGTTGG 690
|| |||||||||| ||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 561 GTTTCTGTTCCTG---GGTTTGATCCTAACAGATGGATACAGCATTGGAGTCGGAGTTGG 617
Query 691 AATCGGCGGTGGAGACGGTGACGACGGCGGAGTTTGGATAGGTGGAGGAAACCCTAATTC 750
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 618 AATCGGCGGCGGAGACGGTGACGACGGCGGTGTTTGGATAGGTGGAGGAAACCCTAATTC 677
Query 751 CAATCCTGGCTCAGCTCCAAACCAACAACAGACAACAAATGCAGCTTACAATGCTCTTCA 810
|||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 678 CAATCCTGGCTCAGCTCC-AA--AGCAACAGACAACAAATGCAGCTTACAATGCTCTTCA 734
Query 811 ATCTTGGAAATCCGCCATTACAGAGGATCCATCTGGTGTTCTTAAAACATGGGTTGGTGA 870
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 735 ATCTTGGAAATCTGCCATTACAGAAGATCCATCTGGTGTTCTTAAGACATGGGTTGGTGA 794
Query 871 AGATGTTTGTTCTTACAGAGGCGTGTTCTGTTCTGGCTCATCT-ATAACCTCCATAGATC 929
|||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 795 AGATGTTTGTTCTTACAGAGGCGTGTTCTGTTCTGGTTCAT-TGATAACCTCCATAGATC 853
Query 930 TAAACAAAGCAAATCTCAAAGGCACCATTGTTAAAGACCTCTCTTTACTCTCAGACCTAA 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 TAAACAAAGCAAATCTCAAAGGCACCATTGTTAAAGACCTCTCTTTACTCTCAGACCTAA 913
Query 990 CCATTCTTCATCTCAACAGTAACAGATTCTCTGGTCAAATCCCAGATTCTTTCAAGAATC 1049
|||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct 914 CCATTCTTCATCTCAATAGCAACAGATTCTTTGGTCAAATCCCAGATTCTTTCAAGAATC 973
Query 1050 TTGATTCTCTTCAAGAACTCGATCTCAGCAACAACAGATTCTCCGGTTCTTTCCCTCAAG 1109
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 974 TTGATTCTCTTCAAGAACTCGATCTCAGCAACAACAGATTCTCTGGTTCTTTCCCTCAAG 1033
Query 1110 TCACACTCTACATCCCAAATCTGGTTTACCTCGATCTCCGGTTCAACAATTTCACTGGCT 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TCACACTCTACATCCCAAATCTGGTTTACCTCGATCTCCGGTTCAACAATTTCACTGGCT 1093
Query 1170 CTATACCGGAAAATCTCTTCAACAAACAATTAGACGCGATTCTCCTCAACAACAATCAAT 1229
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1094 CTATACCGGAAAATCTCTTCAACAAACAATTAGACGCGATTCTTCTCAACAACAATCAAT 1153
Query 1230 TCACCGGAGAAATCCCTGGGAATCTCGGTTACTCTACAGCTTCGGTGATTAATCTCGCTA 1289
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TCACCGGAGAAATTCCTGGGAATCTCGGTTACTCTACAGCTTCGGTGATTAATCTCGCTA 1213
Query 1290 ACAACAAATTATCCGGCGAAATCCCGACGAGTTTCGGTATCACCGGTTCGAAATTGAAAG 1349
| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1214 ATAATAAATTATCCGGCGAAATTCCGACGAGTTTTGGTATCACCGGTTCGAAATTGAAAG 1273
Query 1350 AGGTTTTGTTCTTGAATAACCAGTTAACCGGTTGTATACCGGAATCAGTTGGTTTATTCT 1409
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1274 AGGTTTTGTTCTTGAATAACCAGTTAACCGGTTGTATACCGGAATCAGTCGGTTTATTCT 1333
Query 1410 CCGACATTGAAGTGTTTGATGTTAGTTTCAATTCATTGATGGGTCATGTCCCTGACACGA 1469
||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1334 CCGACATTGAAGTCCTCGACGTTAGTTTCAATTCATTGATGGGTCATGTCCCTGATACGA 1393
Query 1470 TCTCTTGCTTATCGGAGATTGAAGTTTTGAATCTCGGACACAACAAATTCTCCGGTGATC 1529
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1394 TCTCTTGCTTATCGGAGATTGAAGTTTTGAATCTCGGGCACAACAAATTCTCCGGTGATC 1453
Query 1530 TTCCTGATTTGGTCTGTACTTTGAGGAATCTGATAAATCTGACGGTTTCTTTCAACTTCT 1589
|||| |||||||| || |||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct 1454 TTCCCGATTTGGTTTGCACTTTGAGGAATCTGATAAACCTGACGGTTGCTTTCAATTTCT 1513
Query 1590 TCTCTGGGTTTAGCTCTCAGTGCTCGAGCCTTAGCGTTGGGTTTGATTTCACCGGAAATT 1649
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1514 TCTCTGGGTTTAGCTCTGAGTGCTCGAGTCTTAGCGTTGGGTTTGATTTCACCGGAAATT 1573
Query 1650 GTATTCCCGGTAAGGGTTATCAACGGCCTCAGCCGGATTGTTCGGCGATTCCTGGTGGCC 1709
|||||||||||||||||||||||||||| || |||||||||||||||||||| || || |
Sbjct 1574 GTATTCCCGGTAAGGGTTATCAACGGCCGCAACCGGATTGTTCGGCGATTCCCGGCGGTC 1633
Query 1710 AATTGAGCTGTTTTAGAATTCCGGCGCAGCCGTTAACGTGTGCTGCGATTAGCTTGGGGT 1769
||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1634 AATTGAGCTGTCTTAGGATTCCGGCGCAGCCGTTAACGTGTGCTGCGATTAGCGTGGGAT 1693
Query 1770 TGAAGGTGGCTTCATCTCCATGAAAACATAAAAAGTTCGAAGCTT-TTGTATTGGTTATG 1828
|||||||||| ||||||||||||||||| ||| ||| | | ||||||||||||||
Sbjct 1694 TGAAGGTGGCGTCATCTCCATGAAAACACAAAG-GTTTTTTGGTAATTGTATTGGTTATG 1752
Query 1829 CAATTGTGACTTGATAGAAGAAAATGGTTTTTATCAGTTACAT---T-ATTAATCAAACT 1884
|||||||| | || |||| || ||||||||||||||||||| | ||||||||||||
Sbjct 1753 CAATTGTG--T-GA-AGAA-AA--TGGTTTTTATCAGTTACATACATTATTAATCAAACT 1805
Query 1885 GATTTATATTAGTAGATAAAACTTATTTCTGATTTTGAAACCTTT 1929
|||||| | || | | || ||||||||||||||||||||||||
Sbjct 1806 GATTTAG-T-AGAA-AGAAG-CTTATTTCTGATTTTGAAACCTTT 1846
> Ahg945101 jgi|Araly1|945101|scaffold_701330.1
Length=1275
Score = 900 bits (487), Expect = 0.0
Identities = 824/984 (84%), Gaps = 33/984 (3%)
Strand=Plus/Plus
Query 793 AGCTTACAATGCTCTTCAATCTTGGAAATCCGCCATTACAGAGGATCCATCTGGTGTTCT 852
||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||
Sbjct 235 AGCTTACAATGCTCTTCAAGCTTGGAGATCAGCCATTACAGAGGATCCATCTAATGTTCT 294
Query 853 TAAAACATGGGTTGG-TGAAGATGTTTGTTCTTACAGAGGCGTGTTCTGTTCTGGCTC-A 910
||||||||||||||| | ||||||||||||||||| ||| |||||||||||||| || |
Sbjct 295 TAAAACATGGGTTGGAT-CAGATGTTTGTTCTTACAAAGGTGTGTTCTGTTCTGG-TCAA 352
Query 911 TCTATAACCTCCATAGATCTAAACAAAGCAAATCTCAAAGGCACCA-TTGTTAAAGACCT 969
|||||||||||||||||||| ||| | ||||||||||||||| || |||| ||||||||
Sbjct 353 TCTATAACCTCCATAGATCTTAACCATGCAAATCTCAAAGGC-TCACTTGTCAAAGACCT 411
Query 970 CTCTTTACTCTCAGACCT-AACCATTCTTCATCTCAACAGTAACAGATTCTCTGGTCAAA 1028
|||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||
Sbjct 412 AGCTTTACTCTCAGACCTCAA-TATTCTCCATCTCAACAGTAACAGATTCTCAGGGCAAA 470
Query 1029 TCCCAGATTCTTTCAAGAATC-TT-GATTCTCTTCAAGAACTCGATCTCAGCAACAACAG 1086
|||||||||||||| | |||| || | ||||||||||||||| ||||| |||||||| |
Sbjct 471 TCCCAGATTCTTTC-A-AATCTTTAGCTTCTCTTCAAGAACTTGATCTAAGCAACAATAA 528
Query 1087 ATTCTCCGGTTCTTTCCCTCAAGTCACACTCTACATCCCAAATCTGGTTTACCTCGATCT 1146
| |||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 529 ACTCTCAGGTCCTTTCCCTTTAGTCACACTCTACATACCAAATCTGGTTTACCTCGATCT 588
Query 1147 CCGGTTCAACAATTTCACTGGCTCT-ATACCGGAAAATCTCTTCAACAAACAATTAGACG 1205
|||||| || | |||| | || | | || || ||| | || |||||||||| |||||||
Sbjct 589 CCGGTTTAATAGTTTCTCCGG-TTTCATCCCTGAAGAGCTTTTCAACAAACGGTTAGACG 647
Query 1206 CGATTCTCCTCAACAACAATCAATTCACCGGAGAAATCCCTGGGAATCTCGGTTACTCTA 1265
| ||||||||||| ||||| |||||| |||||||||||| | || ||||| | |||
Sbjct 648 CAATTCTCCTCAATAACAACCAATTCGTCGGAGAAATCCCAAGAAACCTCGGAAATTCTC 707
Query 1266 CAGCTTCGGTGATTAATCTCGCTAACAACAAATTATCCGGCGAAATCCCGACGAGTTTCG 1325
| ||||| ||||||||||| || || |||||||| ||||||||||| ||||||||||| |
Sbjct 708 CGGCTTCTGTGATTAATCTGGCAAATAACAAATTTTCCGGCGAAATTCCGACGAGTTTTG 767
Query 1326 GTATCACCGGTTCGA-AATTGAAAGAGGTTTTG-TTCTTGAATAACCAGTTAACCGGTTG 1383
| |||| || |||| || || || |||||| || |||||||||||||||||||||||
Sbjct 768 GCCTCACGGGATCGAGGGTT-AAGGAAGTTTTGCTT-TTGAATAACCAGTTAACCGGTTG 825
Query 1384 TATACCGGAATCAGTTGGTTTATTCTCCGACATTGAAGTGTTTGATGTTAGTTTCAATTC 1443
|||||||||||| |||||| | ||||| || |||||||| ||||| ||||| ||||||||
Sbjct 826 TATACCGGAATCTGTTGGTATGTTCTCTGAAATTGAAGTCTTTGACGTTAGCTTCAATTC 885
Query 1444 ATTGATGGGTCATGTCCCTGACACGATCTCTTGCTTATCGGAGATTGAAGTTTTGAATCT 1503
| ||||||||||||| || || |||||||||||||| |||| ||||||| ||||||||||
Sbjct 886 ACTGATGGGTCATGTTCCAGATACGATCTCTTGCTTGTCGGCGATTGAAATTTTGAATCT 945
Query 1504 CGGACACAACAAATTCTCCGGTGATCTTCCTGATTTGGTCTGTACTTTGAGGAATCTGAT 1563
| ||||||||||||||||| || ||||||||||||| ||| | ||||||||| ||||
Sbjct 946 TGCTCACAACAAATTCTCCGGAGAGGTTCCTGATTTGGTTTGTTCGTTGAGGAATTTGAT 1005
Query 1564 AAATCTGACGGTTTCTTTCAACTTCTTCTCTGGGTTTAGCTCTCAGTG--CT-CGAGCCT 1620
||||| || ||| ||||||||||||||||||||||||||||| | || || | || |
Sbjct 1006 TAATCTCACTGTTGCTTTCAACTTCTTCTCTGGGTTTAGCTCTGAATGTTCTTCCAGGAT 1065
Query 1621 TAGCGTT-GGGTTTGATTTCACCGGAAATTGTATTCCCGGTAAGGG-TTAT-CAACGGCC 1677
|| || ||||| |||||| |||||| |||||||| || | || || | || |||||
Sbjct 1066 TATT-TTCGGGTTCGATTTCGTCGGAAACTGTATTCCGGGGA-GGAATT-TGCAGCGGCC 1122
Query 1678 TCAGCCGGATTGTTCGGCGAT--TCCTGGTGGC-CAATTGAGCTGTTTTAGAATTCCGGC 1734
|||||||||||||||| | | ||| || || | || |||||||||||| |||||| |
Sbjct 1123 GCAGCCGGATTGTTCGG-GTTACTCC-GGCGGAGCGAT-GAGCTGTTTTAGGATTCCGAC 1179
Query 1735 GCAGCCGTTAACGTGTGCTGCGAT 1758
|||||| || | |||||||||||
Sbjct 1180 GCAGCCTTTGGCTTGTGCTGCGAT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73095180155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5