BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G19790.1

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480490 jgi|Araly1|480490|fgenesh2_kg.3__3191__AT2G19790.1         784    0.0  


> Ahg480490 jgi|Araly1|480490|fgenesh2_kg.3__3191__AT2G19790.1
Length=540

 Score =  784 bits (424),  Expect = 0.0
 Identities = 503/537 (94%), Gaps = 21/537 (4%)
 Strand=Plus/Plus

Query  59   GAGCTAGTTGGAGATGGGAATAAGGTTCATATTGATGGTGAACAAGCAAGGCCAGACTCG  118
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAGCTTGTTGGAGATGGGAATAAGGTTCATATTGATGGTGAACAAGCAAGGCCAGACTCG  60

Query  119  TCTTGCTCAGTACTACGAATGGCTCACTCTCGAGGAACGTCGCGCTCTCGAAGGCGAAAT  178
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CCTTGCTCAGTACTACGAATGGCTCACTCTCGAGGAACGTCGCGCTCTCGAAGGCGAAAT  120

Query  179  CGTCCGTAAATGCCTCGCTCGCAACGACCAACAGTGTTCGTTTGTCGAGCATCGCAACTA  238
            |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct  121  CGTCCGTAAATGCCTCGCTCGCAACGACCAGCAGTGTTCGTTTGTTGAACATCGCAACTA  180

Query  239  CAAGATAGTCTACAGGCGTTACGCATCTCTCTTCTTCATGGTTGGGGTTGATGACGATGA  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  CAAGATAGTCTACAGGCGTTACGCATCTCTCTTCTTCATGGTTGGGGTTGATGACGACGA  240

Query  299  AAACGAGCTGGCGATTCTAGAGTTCATACATCTTTTGGTCGAGACAATGGACAAGCATTT  358
            |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct  241  AAACGAGCTGGCGATTCTAGAGTTTATACATCTTTTGGTTGAGACAATGGACAAGCATTT  300

Query  359  TGGAAATGTGTGTGAGCTAGACATAATGTTCCATCTGGAGAAAGCTCATTTCATGCTGGA  418
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TGGAAATGTGTGTGAGCTTGACATAATGTTCCATCTGGAGAAAGCTCATTTCATGCTGGA  360

Query  419  AGAAATGGTGATGAATGGTTGCATTGTGGAGACAAGCAAAGCCAACATACTTTCACCTAT  478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AGAAATGGTGATGAATGGTTGCATTGTGGAGACAAGCAAAGCCAACATACTTTCACCTAT  420

Query  479  ACAACTTATGGACAAAGCCCATTAATGCTAAACACCCTGTTTCTATTTCTGTTAATCCGT  538
            ||||||||||||||||||||||||| | |        | |  |||||||       | ||
Sbjct  421  ACAACTTATGGACAAAGCCCATTAA-G-T--------T-T--CTATTTC-------C-GT  459

Query  539  TTCATCACTTTGTTACACACTTCTTCTTGTATTATTATTAACGATGCTTCAAAGAGA  595
            ||||||||| ||||||||||  ||||||||||||||||||| |||||||||||||||
Sbjct  460  TTCATCACTCTGTTACACACCACTTCTTGTATTATTATTAAAGATGCTTCAAAGAGA  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23483716872


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5