BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19800.1
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931409 jgi|Araly1|931409|scaffold_303866.1 1633 0.0
> Ahg931409 jgi|Araly1|931409|scaffold_303866.1
Length=995
Score = 1633 bits (884), Expect = 0.0
Identities = 961/998 (96%), Gaps = 6/998 (1%)
Strand=Plus/Plus
Query 135 CGTATCAAATTCCGAGCAAGATGACTATTCTTGTTGAACATTTTGTTC-CTGATTCAAGA 193
||||||||||||||||||||||||||||||| ||||||||||| | || |||||||||||
Sbjct 1 CGTATCAAATTCCGAGCAAGATGACTATTCTCGTTGAACATTTCG-TCTCTGATTCAAGA 59
Query 194 GTGGATGAAAAGAAAGTGATAGAGGAGAGGGATAATGAATTGGTGTTGGATGGAGGTTTT 253
|| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 GTTGATGAAAAGAAAGTTATAGAGGAGAGGGATGATGAATTGGTGTTGGATGGAGGTTTT 119
Query 254 GTGGTTCCAAAATCAAAGGAAACTGATGCATTCGATGCTCCTGATATGAATTTCTTGGGC 313
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 GTGGTTCCAAAATCAAAGGAAACTGATGCATTCGATGCTCCTGATATGAATTTCTTAGGC 179
Query 314 CATTCCTTCAGGGATTATGAGAATGGTGAAAGCGAGAGACAACAAGGTGTTGAGGAATTT 373
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CATTCTTTCAGGGATTATGAGAATGGTGAAAGCGAGAGACAACAAGGCGTTGAGGAATTC 239
Query 374 TACAGGATGCAACACATTCACCAGACCTATGACTTTGTGAAGAAGATGAGGAAAGAGTAT 433
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TATAGGATGCAACACATTCACCAGACCTATGACTTTGTGAAGAAGATGAGGAAAGAGTAT 299
Query 434 GGAAAACTTAACAAGATGGAAATGAGTATATGGGAATGTTGTGAGTTATTGAACAATGTT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGAAAACTTAACAAGATGGAAATGAGTATATGGGAATGTTGTGAGTTATTGAACAATGTT 359
Query 494 GTTGATGAAAGCGATCCGGATCTTGATGAGCCTCAAATTCAACACCTTCTCCAAACCGCT 553
|| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 GTCGATGAGAGCGACCCGGATCTTGATGAGCCTCAAATCCAACACCTTCTCCAAACCGCT 419
Query 554 GAAGCCATTCGAAGGGACTATCCCGACGAAGATTGGCTCCATCTCACTGCCCTAATCCAT 613
||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 GAAGCCATTCGCAGGGATTATCCCGACGAAGATTGGCTCCATCTCACTGCCTTAATCCAT 479
Query 614 GATCTTGGCAAGGTTCTCCTTCTGCCAGAATTCGGTGGTCTTCCCCAGTGGGCTGTCGTT 673
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 GATCTTGGCAAGGTTCTCCTTCTGCCAGAATTCGGTGGTCTTCCCCAGTGGGCTGTTGTT 539
Query 674 GGCGATACATTTCCAGTTGGATGTACCTTCGACTCAGCCAATATTCACCACAAGTATTTC 733
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 GGCGATACATTTCCAGTTGGATGCACCTTCGACTCAGCCAATATTCACCACAAGTATTTC 599
Query 734 AAAGGAAA-CCATGATATCAACAACCCAAAGTACAACACAAAAAATGGAGTTTACACTGA 792
|||||||| || |||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 600 AAAGGAAATCC-TGATATCAACAACCCAAAATACAACACAAAAAATGGAGTTTACAGTGA 658
Query 793 AGGATGTGGTTTAGACAATGTTCTCATGTCATGGGGTCATGACGACTACATGTATTTGGT 852
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGATGTGGATTGGACAATGTTCTCATGTCATGGGGTCATGACGACTACATGTATTTGGT 718
Query 853 GGCTAAG-AAGAATGGCACGACCCTTCCTCACGCTGGTCTCTTCATTATTCGATATCATT 911
||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 719 GGCTAAGGAA-AATGGCACGACTCTTCCTCACGCTGGTCTCTTCATTATTCGATACCATT 777
Query 912 CCTTTTATCCATTGCACAAGGCAGGAGCCTACACACACTTGATGAACGATGAGGACAGAG 971
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 778 CCTTCTATCCATTGCACAAGGCAGGAGCTTACACGCACTTGATGAACGATGAGGACAGAG 837
Query 972 ATGATCTCAAGTGGCTCCATGTCTTCAATAAATATGACCTATACAGTAAGAGCAAAGTTC 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGATCTCAAGTGGCTCCATGTCTTCAATAAATATGACCTATACAGTAAGAGCAAAGTTC 897
Query 1032 TGGTAGATGTCGAACAAGTGAAGCCTTACTACATTTCACTCATCAACAAGTATTTTCCGG 1091
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 898 TTGTAGATGTCGAACAAGTGAAGCCTTACTACATTTCCCTCATCAACAAGTATTTTCCGG 957
Query 1092 CGAAACTAAAATGGTGAGATAAAGCTACGAGTCAATTA 1129
||||||||||||||||||||||||||| ||||||||||
Sbjct 958 CGAAACTAAAATGGTGAGATAAAGCTAAGAGTCAATTA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49292931681
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5