BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19802.1
Length=442
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931408 jgi|Araly1|931408|scaffold_303865.1 254 5e-67
> Ahg931408 jgi|Araly1|931408|scaffold_303865.1
Length=259
Score = 254 bits (137), Expect = 5e-67
Identities = 208/241 (86%), Gaps = 9/241 (4%)
Strand=Plus/Plus
Query 71 TAAAAATAGTGGTTACCT-TGTTTCTTCTTGCATTTGGCCTTGCTCATGCTAGATATCCA 129
||||||| ||||||| || |||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 19 TAAAAATGGTGGTTA-CTCTGTTTCTTCTTGCATTTGGCCTTGCTCAGGCTCGATTTCCA 77
Query 130 ATTTTCCCAACC---CCATATGCTCCTCCATCAAACGGAATTGTGAAGACATCAGTGAAT 186
| |||||||||| |||| | |||||||| ||||| ||| ||| ||||| ||||||||
Sbjct 78 ACTTTCCCAACCGAGCCATTTCCTCCTCCACCAAACCGAAGTGTAAAGACCTCAGTGAAC 137
Query 187 CAATTCCCAGGCTTTACACCTCCATTTTACCCTCCAGGACACAAAAAACATCCACCAAGT 246
|||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 138 CAATTCCCAGGCGTAACACCTCCATTTTTCCCTCCAGGACACAAAAAACATCCACCA-GT 196
Query 247 -CT-AGAACATCCAGCTAAGAATGCGAAGATGTCAATAAACTAATATTTATACATATATT 304
| || ||| |||||||||||||||||||||||| ||||| |||||| ||||| |||
Sbjct 197 TCCCAGG-CATGAAGCTAAGAATGCGAAGATGTCAATGAACTAGTATTTAAACATACATT 255
Query 305 T 305
|
Sbjct 256 T 256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15949036202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5