BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19810.1
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480488 jgi|Araly1|480488|fgenesh2_kg.3__3189__AT2G19810.1 1666 0.0
Ahg491837 jgi|Araly1|491837|fgenesh2_kg.7__1270__AT4G29190.1 678 0.0
> Ahg480488 jgi|Araly1|480488|fgenesh2_kg.3__3189__AT2G19810.1
Length=1442
Score = 1666 bits (902), Expect = 0.0
Identities = 1043/1110 (94%), Gaps = 14/1110 (1%)
Strand=Plus/Plus
Query 100 TaaaaaaaTGATGATCGGAGAATCTCATCGTGGTTTTAATCCAACGGTTCATATTCC-TC 158
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 67 TAAAAAAATGATGATCGGAGAATCTCATCGTGGTTTTAATCCTACGGTTCATATTCCAT- 125
Query 159 CATGGCCACTTTCTGAAGATCTAACGGTGTCTGATATTTACGGAAGTCCAGACGGAGGAA 218
|||||||||| ||||||||| |||||| ||| ||| ||||||||||||||||||||||||
Sbjct 126 CATGGCCACTGTCTGAAGATTTAACGGCGTCAGATGTTTACGGAAGTCCAGACGGAGGAA 185
Query 219 GTAGTATGATGGAAGCTTTGGCTGAGTTACAACGTTATCTTCCGTCAAACGAACCGGATC 278
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 186 GTAGTATGATGGAAGCTTTGGCTGCGTTACAACGTTATCTTCCGTCTAACGAACCGGATC 245
Query 279 CGGATTCAGATCCGGATCTCTCGGGTCCGGATTCACCAATCGATGCTTATACATGCGATC 338
||||||| ||||||||||||||||||||||||||||| |||||||||||| | || ||||
Sbjct 246 CGGATTCTGATCCGGATCTCTCGGGTCCGGATTCACCCATCGATGCTTATTCGTGTGATC 305
Query 339 ATTTTCGGATGTATGAGTTTAAAGTGAGACGTTGTGCTCGTGGCCGGAGCCATGATTGGA 398
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 306 ATTTTCGGATGTATGAGTTTAAAGTGAGACGTTGCGCTCGTGGTCGGAGTCATGATTGGA 365
Query 399 CGGAGTGTCCTTACGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAGTTTC 458
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CGGAGTGTCCTTATGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATCCGAGGAAGTTTC 425
Query 459 ATTACTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTTGTTGCAAGAGAGGAGACGCAT 518
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 426 ATTATTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTGGTTGCAAGAGAGGAGACGCGT 485
Query 519 GTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCACCCGGCGCGTTACCGGACTCAGC 578
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 486 GTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCATCCGGCGCGTTACCGGACTCAGC 545
Query 579 CGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTTGCTCATTCGCCGGATC 638
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 546 CGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTCGCTCATTCGCCGGATC 605
Query 639 AGATTAGGGTTTTGCCTAATCAAAGCCCTGATCGTGTTGATTCGTTCGACGTTTTGTCTC 698
|| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 606 AGCTTAGGGTTTTGCCTAGTCAAAGCCCTGATCGTGTTGATTCATTCGACGGTTTGTCTC 665
Query 699 CTACGATTCGTAGAGCGTTTCAGTTTTCGATTTCTCCGTCGTCTAACTCGCCGCCGGTGA 758
| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||
Sbjct 666 C---GATTCGTAGAGCGTTTCAGTTTACGATTTCGCCGTCGTCTAACTCCCCGCCGGTGA 722
Query 759 GTCCACGAGGTGACTCGGACTCGTCGT-GT-TCGTTACTGAGTCGTTCACTCGGGTCTAA 816
|||| ||||||||||||||||||||| || || | |||||||||||||||||| |||||
Sbjct 723 GTCCTCGAGGTGACTCGGACTCGTCGCCGTCTC-T-ACTGAGTCGTTCACTCGGATCTAA 780
Query 817 TCTGGGAAACGACGTCGTTGCGTCTCTCAGGAATCTGCAACTTAATAAAGTGAAGTCTTC 876
| |||||||||||||||||||||| || ||||||||||| |||| ||||||||||||| |
Sbjct 781 TTTGGGAAACGACGTCGTTGCGTCCCTGAGGAATCTGCAGCTTAGTAAAGTGAAGTCT-C 839
Query 877 TCTTTCGTCGTCATACAACAATCAAATCGGAGGATACGGATCCGGATTCGGGTCGCCTCG 936
| || | ||||| ||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 840 T-TT-CTTCGTCGTACAACAATGAAATCGGAGGATACGGATCTGGGTTCGGGTCGCCTCG 897
Query 937 TGGATCGGTTTTGGGTCCTGGTTTCCGTAGCTTACCAACTACACCGACCCGACCTGGTTT 996
|||||||||||||||||||||||| || ||||||||||| |||||||||||||| || ||
Sbjct 898 TGGATCGGTTTTGGGTCCTGGTTTTCGGAGCTTACCAACAACACCGACCCGACCCGGGTT 957
Query 997 TATGAACATTTGGGAGAATGGCTTGGAGGAAGAACCGGCGATGGAACGGGTCGAGTCGGG 1056
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 958 TATGAACATTTGGGAAAATGGTTTGGAGGAAGAACCGGCGATGGAACGGGTCGAGTCGGG 1017
Query 1057 TCGTGAACTGCGAGCGCAGCTGTTCGAGAAGCTGAGCAAAGAGAATTGCATGGGTCG-GA 1115
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1018 TCGTGAACTGCGAGCGCAGCTGTTCCAGAAGCTGAGCAAAGAGAATTGCATGGGTCGTG- 1076
Query 1116 TTGAACCGGATCCGGATCAGGGAGCGGGTGATACTCCTGATGTCGGGTGGGTCTCTGACT 1175
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1077 TTGACCCGGATCCGGATCAGGGAGCGGGTGATGCTCCTGATGTCGGGTGGGTCTCTGACT 1136
Query 1176 TGGTTATGTGATTTGAACCGGATTCGTAAA 1205
|||||||||||||| |||||||||||||||
Sbjct 1137 TGGTTATGTGATTTTAACCGGATTCGTAAA 1166
Score = 276 bits (149), Expect = 4e-73
Identities = 199/222 (90%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 1329 TTTATTATTTCCTAATTTCGTATAATCTCTGTTCCATAATCGATGATTCGAGGGAG---- 1384
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 1225 TTTATTATTTCCTAATTTCGTATAATCTCTATTTTATAATCGATGATTCCAGGGAGATTT 1284
Query 1385 ATTCCTCAGTGTATAGGAGTTGCTTAGGATTTTTCATTATGATGGATTCACTAATATTGA 1444
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1285 ATTTCTCAGTGTATAGGAGTTGCTTAGGATTTTTCATTATGATGGATTCACTAATAATGA 1344
Query 1445 TATTGTTGGTTATTGttttttttATATATTATGATGTAAGATGCAAGTCGCAATGTAATT 1504
||||||||||| ||| |||| |||| | ||||||| ||||||| || ||||||||||
Sbjct 1345 TATTGTTGGTTTTTGGTTTTG--ATAT-T-ATGATGTTCGATGCAAATCTCAATGTAATT 1400
Query 1505 ATTAAATATCTTATGAATGAAATGAGAATGTAAATTATTTAT 1546
||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1401 ATTAAATATCTAATGAATGAAATGAGGATGTAAATTATTTAT 1442
> Ahg491837 jgi|Araly1|491837|fgenesh2_kg.7__1270__AT4G29190.1
Length=1307
Score = 678 bits (367), Expect = 0.0
Identities = 881/1119 (79%), Gaps = 76/1119 (7%)
Strand=Plus/Plus
Query 100 Taaa-aaaaTGATGATCGGAGAATCTCATCGTGGTTTTAATCCAACGGTTCATATTCCTC 158
|||| || ||||||||||||||| ||| | || || |||| || ||| | || ||||
Sbjct 2 TAAAGAAGATGATGATCGGAGAAACTC-GC-CGGACTT-ATCCTACTGTTGAAATACCTC 58
Query 159 CATGGCCACTTTCTGAAGATCTAACGGTGTCTGA----TATT-TAC-G-GAAGTCCAGAC 211
|||||||| |||||||||| || |||| ||| || | || | | | || | || |
Sbjct 59 CATGGCCAGTTTCTGAAGAGCTTACGGCGTCGGAGTTTTTTTCTCCGGTGATGAATAGTC 118
Query 212 GGAGGA-AGTAGTATGATGGAAGCTTTGGCTGAGTTACAACGTTATCTTCCGTCAAACGA 270
| || |||| ||| | ||||||||||| | ||| || |||||||||||||| |||||
Sbjct 119 -CA-GATTGTAGCATGCTTGAAGCTTTGGCGGCGTTGCAGCGTTATCTTCCGTCTAACGA 176
Query 271 ACCGGATCCGGATTCAGATCCGGATCTCTCGGGTCCGGATTCACCAATCGATGCTTA-TA 329
||||||||||||||| || |||||| | | |||||| |||||||||||||||||||| |
Sbjct 177 ACCGGATCCGGATTCTGACCCGGATTTATTGGGTCCTGATTCACCAATCGATGCTTACT- 235
Query 330 CATGCGATCATTTTCGGATGTATGAGTTT-AAAGT--GAGACGTTGTGCTCGTGGCCGGA 386
|||| || ||||| || ||||| || ||| ||||| | || | ||||||||||||||||
Sbjct 236 CATGTGACCATTTCCGTATGTACGA-TTTCAAAGTCCG-GA-GGTGTGCTCGTGGCCGGA 292
Query 387 GCCATGATTGGACGGAGTGTCCTTACGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATC 446
| |||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||
Sbjct 293 GTCATGATTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCTCGCCGGAGAGATC 352
Query 447 CGAGGAAGTTTCATTACTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTTGTTGCAAGA 506
||||||||| ||||||||||||||||| |||||||| ||||| |||||| |||||||||
Sbjct 353 CGAGGAAGTACCATTACTCCGGTACGGCTTGTCCTGATTTTCGCAAAGGTGGTTGCAAGA 412
Query 507 GAGGAGACGCATGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCACCCGGCGCGTT 566
||| || | |||||||| ||||||| ||||| |||||||||||||| || || ||||
Sbjct 413 AAGGTGATTCTTGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCTCGTT 472
Query 567 ACCGGACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTTGCTC 626
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 473 ACCGGACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGGAAAGTTTGTTTCTTTGCTC 532
Query 627 ATTCGCCGGATCAGATT-AGGGTTTTGCCTAATCAAAGCCCTGATCGTGTTGATTCGTTC 685
|||| ||||||||| || ||| |||| || | || ||||| ||||| |||||||| |||
Sbjct 533 ATTCACCGGATCAG-TTGAGGTTTTTACCGAGTCGGAGCCCCGATCGGGTTGATTCTTTC 591
Query 686 GACGTTTTGTCTCCTACGATTCGT---AGAGCGTTTCAGTTTTCGATTTCTCCG-TCGTC 741
||||||| |||||| ||||||| |||||||||||| | |||||||| ||| | ||
Sbjct 592 GACGTTTCGTCTCC---GATTCGTGCTAGAGCGTTTCAGCTCTCGATTTCGCCGGTT-TC 647
Query 742 TAACTCGCCGCCGGTGAGTCCACGAGGTGACTCGGACTCGTC---G-TGT-TCGTT-ACT 795
| ||||||||| |||||||| ||| ||||||||| || || | || || | |||
Sbjct 648 TGGTTCGCCGCCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAATCACT 707
Query 796 GAGTCGTTCACTCGGGTCTAATCTGGG-AAACGACGTCGTTGCGTC-TCTCAGGAATCTG 853
||||| || ||||||||| | | | ||||||||||||| | || | | ||||| ||
Sbjct 708 TAGTCGATCTCTCGGGTCTTGT-TCGATAAACGACGTCGTTCCTTCGTTT-AGGAA-CTT 764
Query 854 -CAACTTAATAAAGTGAAGTCTTCTCTTTCGTCGTCATACAACAATCAAATCGGAGGATA 912
|| ||||||| || || || | | | | | ||||| | ||||| | | |
Sbjct 765 ACAGTTTAATAAGGTAAAATCAT-T-T--C--C-TCATA-A-CAATCCTTT---A---T- 808
Query 913 CGGATCCGGATTCGGGTCGCCTCGTGGATCGGTTTTGGGTCCTGG-TTTCCGTAGCTTAC 971
|| |||||||||||||| ||||||||| ||||||||||||| |||| || || |
Sbjct 809 ----TC-GGATTCGGGTCGCCCCGTGGATCGATTTTGGGTCCTGGGTTTCAGTCTCTG-C 862
Query 972 CAACTACACCGACCCGACCTGGTTTTATGAACATTTGGGAGAATGGCTTGGAGGAAGAAC 1031
| || |||||||||||||| || | || | |||||||| |||| || |||||||| |
Sbjct 863 CTACAACACCGACCCGACCCGGAAATCTGGATATTTGGGACTATGGGTTAGAGGAAGAGC 922
Query 1032 CGGCGATGGAACGGGTCG---AGTCGGGTCGTGAACTGCGAGCGCAGCTGTTCGAGAAGC 1088
| | ||||| ||||||| ||||||||||||| || |||| || || |||||| |
Sbjct 923 CTGTAATGGAGCGGGTCGTTGAGTCGGGTCGTGAGCTACGAGAAAAGATGCGCGAGAAAC 982
Query 1089 TGAGCA-AAG-AGAATTGCATGGGTCGGATTGAACCGGATCCGGATCAGGGAG-CGGGTG 1145
| | || ||| |||||||| ||| |||| |||| ||||||||||||||| || ||||||
Sbjct 983 T-A-CACAAGGAGAATTGCTTGGATCGGGTTGACCCGGATCCGGATCAGA-AGTCGGGTG 1039
Query 1146 ATACTCCTGATGTCGGGTGGGTCTCTGACTTGGTTATGT 1184
|| ||||||||||||||||||| |||||| || | ||||
Sbjct 1040 ATGCTCCTGATGTCGGGTGGGTATCTGACCTGCTGATGT 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57897172400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5