BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G19820.1

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg905205 jgi|Araly1|905205|Al_scaffold_0003_2333                    483    5e-136


> Ahg905205 jgi|Araly1|905205|Al_scaffold_0003_2333
Length=375

 Score =  483 bits (261),  Expect = 5e-136
 Identities = 340/378 (90%), Gaps = 6/378 (2%)
 Strand=Plus/Plus

Query  12   ATGGATGTCTCGAGAGTCAATGTTAAACGTGCTCCTTGTGCTCTATGCACCACCAAAAAC  71
            ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATGCCTCCAGAGTCAATGTTAATCGTGCTCCTTGTGCTCTATGCACCACCAAAAAC  60

Query  72   AAACGCTGTCCCAAAAAATGTGATTTTGCACCATATTTTCCTGCCGAAAGAAAA-GGTGA  130
            ||| | || |||||||| ||||| |||||||||||||| || || |||| ||   |||||
Sbjct  61   AAAAGATGCCCCAAAAATTGTGAATTTGCACCATATTTCCCAGCAGAAA-AACTCGGTGA  119

Query  131  ATATGAAAATGCACATAAGTTATTTGGTACGTCAAATATTATTAAGATGATGAGGTTCGC  190
            || ||||| ||||||||| |||||||||||  |||||||||| |||||||||||| ||| 
Sbjct  120  ATTTGAAAGTGCACATAAATTATTTGGTACACCAAATATTATGAAGATGATGAGGCTCGT  179

Query  191  GTCCAAAGAC-AAA-CAAAGAGACATGTTGGCATCGTCCATACTCATGGAAGGTGACGCT  248
            |||| ||||| ||| ||||| || |||||||||||||||||||||||||||||||| |||
Sbjct  180  GTCCGAAGACGAAAACAAAG-GA-ATGTTGGCATCGTCCATACTCATGGAAGGTGATGCT  237

Query  249  TGGAAAAAAGATCCAGCGAGAGGTGGATTTGGAATGATCCAAAAATTAAAGTGGCAAATT  308
            |||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct  238  TGGAAAAAGGATCCAGTGAGAGGTGGATTTGGTATTATCCAAAAATTAAAGTGGCAAATT  297

Query  309  GAATTACGCAAAATCTACCTCAATGAACTAAAGGAGAAGATTAAAGTTGaaaaagaaaaa  368
            ||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct  298  GAACTACGCAAACTCTACCTCAATGAATTAAAGGAGAAGATTAAAGTTGAAAAGGAAAAA  357

Query  369  aCAGAGCTCCGTCTTTAA  386
            || |||||||||||||||
Sbjct  358  ACTGAGCTCCGTCTTTAA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13850478807


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5