BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19830.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343220 jgi|Araly1|343220|fgenesh1_pg.C_scaffold_3002983 911 0.0
> Ahg343220 jgi|Araly1|343220|fgenesh1_pg.C_scaffold_3002983
Length=561
Score = 911 bits (493), Expect = 0.0
Identities = 539/561 (96%), Gaps = 3/561 (1%)
Strand=Plus/Plus
Query 237 ATGTTAGAGAAGAAGGAGAATGTTCTTCTCAAGAAAGCTACTGGAGAGGTTGAGAAAGCT 296
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGCTAGAGAAGAAGGAGAATGTTCTTCTCAAGAAAGCTGCTGGAGAGGTTGAGAAAGCT 60
Query 297 AAGGAATTCTCCCGGGCGAAGAACAAACGCGCGGCTATACAATGTTTGAAAAGGAAAAGG 356
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 61 AAGGAATTCTCCCGGGTGAAGAACAAACGAGCGGCTATACAATGTTTGAAAAGGAAGAGG 120
Query 357 TTATATGAGCAACAAGTTGAACAGCTCGGGAATTTCCAGCTCCGTATTCATGATCAAATG 416
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 121 TTATATGAGCAACAAGTTGAACAGCTTGGGAATTTCCAGCTCCGTATTCATGATCAGATG 180
Query 417 ATTATGTTAGAAGGTGCTAAAGCAACAACAGAGACTGTAGATGCTTTGAGGACTGGAGCT 476
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTATGTTAGAAGGTGCGAAAGCAACAACAGAGACTGTAGATGCTTTGAGGACTGGAGCT 240
Query 477 TCTGCAATGAAAGCTATGCAGAAAGCAACAAACATTGATGATGTTGACAAGACAATGGAT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTGCAATGAAAGCTATGCAGAAAGCAACAAACATTGATGATGTTGACAAGACAATGGAT 300
Query 537 GAGATCAATGAACAAACTGAGAACATGAAACAGATCCAAGAAGCATTGTCGGCTCCATTT 596
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGATCAACGAGCAAACTGAGAACATGAAACAGATCCAAGAAGCATTGTCGGCTCCATTT 360
Query 597 GGG---GCTAATGATTTTGATGAGGATGAATTGGAAGCAGAACTTGACGAACTAGAAGGC 653
|| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GGAACAGCTGCTGATTTTGATGAGGATGAATTGGAAGCAGAACTTGAAGAACTAGAAGGC 420
Query 654 GCTGAGCTAGAAGAGCAACTTCTTCAGCCTGTTCCAATCCATGTGCCTCAAGGAAACAAG 713
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCCGAGCTAGAAGAGCAACTTCTTCAGCCTGTTCCAATCCATGTGCCTCAAGGAAACAAA 480
Query 714 CCTGCTCGTGCTCCAGCTCAGAAGCAACCTACTGCTGAGGAAGATGAACTCGCTGCCTTA 773
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTAATCGTGCTCCAGCTCAAAAGCAACCTACTGCTGAGGAAGATGAACTCGCTGCCTTA 540
Query 774 CAAGCTGAGATGGCTCTCTAA 794
|||||||||||||||||||||
Sbjct 541 CAAGCTGAGATGGCTCTCTAA 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5