BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19860.1
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931405 jgi|Araly1|931405|scaffold_303862.1 2425 0.0
Ahg945111 jgi|Araly1|945111|scaffold_701340.1 1332 0.0
> Ahg931405 jgi|Araly1|931405|scaffold_303862.1
Length=1551
Score = 2425 bits (1313), Expect = 0.0
Identities = 1466/1541 (95%), Gaps = 5/1541 (0%)
Strand=Plus/Plus
Query 62 GAGAAAGATGGGTAAAGTGGCAGTTGCAACGACGGTAGTGTGTTCGGTGGCGGTATGTGC 121
|||| |||||||||||||||| ||||| |||||||| |||||||| |||||||| |||||
Sbjct 14 GAGAGAGATGGGTAAAGTGGCTGTTGCTACGACGGTTGTGTGTTCAGTGGCGGTTTGTGC 73
Query 122 GGCGGCGGCGTTGATAGTACGGAGGAGAATGAAAAGCGCAGGGAAATGGGCAAGAGTGAT 181
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 74 GGCGGCGGCGTTGATAGTACGGCGGCGAATGAAAAGCTCAGGGAAATGGGCAAGAGTGAT 133
Query 182 AGAGATATTGAAAGCCTTTGAAGAAGATTGTGCAACGCCAATTGCCAAATTGAGACAAGT 241
||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 134 AGAGATATTGAAAGCGTTTGAAGAAGATTGTGCAACGCCCATCGCGAAATTGAGACAAGT 193
Query 242 GGCTGATGCTATGACTGTTGAGATGCATGCTGGTCTTGCTTCTGAAGGTGGCAGCAAGCT 301
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 194 GGCTGATGCTATGACTGTGGAGATGCATGCTGGTCTTGCTTCTGAAGGTGGAAGCAAACT 253
Query 302 TAAGATGCTTATTAGCTACGTTGATAATCTTCCTTCTGGGGATGAGACTGGTTT-TTTCT 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 254 TAAGATGCTTATTAGCTACGTTGATAATCTTCCTTCTGGGGATGAAACTGGTTTCTTT-T 312
Query 361 ATGCGTTGGATCTAGGCGGAACAAACTTCCGTGTTATGCGTGTGCTTCTTGGTGGGAAGC 420
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 313 ATGCATTGGATCTAGGAGGAACAAACTTCCGTGTAATGCGTGTGCTTCTTGGTGGGAAAC 372
Query 421 ACGACCGTGTTGTTAAACGAGAATTCAAAGAAGAATCTATTCCTCCTCAT-TTGATGACC 479
| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct 373 AAGACCGTGTTGTTAAACGAGAATTCAAAGAAGAATCAATTCCTCCTCATCTT-ATGACC 431
Query 480 GGGAAGTCACATGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGCTACA 539
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 432 GGGAAATCACATGAATTATTCGATTTTATCGTTGACGTTCTTGCCAAGTTTGTCGCTACA 491
Query 540 GAAGGCGAGGACTTTCATCTCCCACCTGGTAGACAACGGGAACTAGGTTTTACTTTCTCA 599
|||||||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||
Sbjct 492 GAAGGCGAGGACTTTCATCTCCCACCGGGTAGACAAAGGGAGTTAGGTTTCACTTTCTCA 551
Query 600 TTTCCGGTTAAGCAGCTATCTTTATCCTCTGGCACTCTCATCAACTGGACGAAGGGCTTT 659
||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |||
Sbjct 552 TTTCCGGTTAAGCAGATATCTTTGTCCGCTGGCACTCTCATCAACTGGACAAAGGGGTTT 611
Query 660 TCCATTGACGATACAGTTGATAAAGATGTTGTTGGAGAACTTGTTAAAGCTATGGAAAGA 719
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TCCATTGATGATACAGTTGATAAAGATGTTGTTGGAGAACTTGTTAAAGCTATGGAAAGA 671
Query 720 GTTGGGCTGGACATGCTTGTCGCAGCGCTTGTTAATGATACCATTGGAACACTTGCGGGT 779
|||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 672 GTTGGGCTGGACATGCGTGTTGCAGCGCTTGTTAATGATACTATTGGAACACTCGCGGGT 731
Query 780 GGTAGATACACTAACCCGGATGTCGTTGTCGCAGTTATTTTGGGCACCGGCACAAATGCA 839
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 732 GGTAGATACACTAACCCGGATGTCGTTGTCGCTGTTATTTTGGGCACCGGCACAAATGCA 791
Query 840 GCCTATGTCGAACGTGCACATGCAATTCCCAAATGGCATGGTTTGCTACCCAAATCAGGA 899
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 792 GCATATGTCGAACGTGCACATGCAATTCCCAAATGGCATGGTTTGCTTCCCAAATCAGGA 851
Query 900 GAAATGGTGATCAACATGGAATGGGGAAACTTCAGGTCATCACATCTTCCATTGACAGAG 959
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 852 GAAATGGTGATCAACATGGAGTGGGGAAACTTCAGGTCATCGCATCTTCCATTGACAGAG 911
Query 960 TACGACCACTCTCTAGATGTCGATAGTTTGAATCCTGGTGAACAGATTCTTGAGAAAATC 1019
||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 912 TACGACCACTCGCTAGATTTGGATAGTTTGAATCCTGGTGAACAGATTCTTGAGAAAATA 971
Query 1020 ATTTCCGGAATGTATCTGGGAGAAATCTTGCGTAGAGTTCTTCTGAAGATGGCTGAAGAA 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 972 ATTTCCGGAATGTATCTGGGAGAAATCTTGCGTAGAGTTCTTTTGAAGATGGCTGAAGAA 1031
Query 1080 GCTGCCTTCTTTGGCGATATCGTCCCACCTAAGCTGAAAATACCATTCATCATAAGGACC 1139
||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct 1032 GCTGCTTTCTTTGGCGACATCGTGCCACCCAAGCTGAAAATACCATTCATCTTAAGGACC 1091
Query 1140 CCGAACATGTCTGCTATGCACAGTGATACTTCCCCGGATTTGAAGGTTGTAGGAAGCAAG 1199
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1092 CCGAACATGTCTGCTATGCACAGCGATACTTCCCCGGATTTGAAGGTTGTTGGAAGCAAG 1151
Query 1200 TTAAAAGACATATTGGAGGTCCAGACTAGTTCTCTGAAGATGAGGAAAGTTGTGATCAGC 1259
|||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 1152 TTAAAAGACATATTGGAGGTCCCGAATAGTTCTCTGAAGATGAGAAAAGTTGTGATCAGC 1211
Query 1260 CTATGTAACATCATTGCAAGCCGAGGAGCTCGTTTATCTGCTGCGGGGATCTATGGAATC 1319
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1212 CTCTGTAACATCATCGCAAGCCGAGGAGCTCGTTTATCTGCTGCAGGGATCTATGGAATT 1271
Query 1320 CTCAAGAAAATAGGAAGAGACGCAACAAAAGATGGAGAAGCTCAGAAATCTGTGATAGCG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1272 CTCAAGAAAATAGGAAGAGACGCAACAAAAGATGGAGAAGCTCAGAAATCTGTAATAGCA 1331
Query 1380 ATGGACGGTGGGCTATTCGAGCATTACACTCAGTTCAGTGAGTCGATGAAGAGTTCATTG 1439
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1332 ATGGACGGTGGGCTATTCGAGCACTACACTCAGTTCAGTGAGTCGATGAAGAGTTCATTG 1391
Query 1440 AAAGAGTTGCTTGGAGATGAAGTTTCAGAGAGTGTTGAAGTGATACTGTCGAATGATGGT 1499
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1392 AAAGAGTTGCTTGGAGATGAAGTTTCAGAGAGTGTTGAAGTGATACTATCGAATGATGGT 1451
Query 1500 TCAGGTGTTGGAGCTGCATTACTTGCTGCTTCTCACTCTCAGTATCTCGAACTTGAAGAT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 TCAGGTGTTGGAGCTGCATTACTTGCTGCTTCTCACTCTCAGTATCTCGAACTTGAAGAT 1511
Query 1560 GACTCTGAAACAAGTTAATTTTAAAAGCCttttttttGTGT 1600
|||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1512 GACTTTGAAACAAGTTAATTTTAAA-GCCTTTTTTTTTTGT 1551
> Ahg945111 jgi|Araly1|945111|scaffold_701340.1
Length=1532
Score = 1332 bits (721), Expect = 0.0
Identities = 1255/1511 (83%), Gaps = 43/1511 (3%)
Strand=Plus/Plus
Query 61 GGAGAAAGATGGGTAAAGTGGCAGTTGCAACGACGGTAGTGTGTTCGGTGGCGGTATGTG 120
||||||| ||||||||||| || |||| | ||||||| || || ||| |||||| ||||
Sbjct 14 GGAGAAA-ATGGGTAAAGTAGCTGTTGGAGCGACGGTTGTTTGCACGGCGGCGGTTTGTG 72
Query 121 CGGCGGCGGCGTTGATAGTACGGAGGA-GAATGAAAAGCGCAGGGAAATGGGCAAGAGTG 179
||| ||| | ||| | || | || || | ||| | ||| ||||||| |||| | | ||
Sbjct 73 CGGTGGCTGTTTTGGTTGTTC-GACGACGGATGCAGAGCTCAGGGAAGTGGGGACGTGTT 131
Query 180 ATAGAGAT-ATTGAAAGCCTTTGAAGAAGATTGTGCAACGCCAAT-TGCCAAATTGAGAC 237
| | || || || || |||||||| |||||||| || || || | | ||| ||||||
Sbjct 132 TTGGCCATCCTT-AAGGCTTTTGAAGAGGATTGTGCGACTCCGATCT-CGAAACTGAGAC 189
Query 238 AAGTGGCTGATGCTATGACTGTTGAGATGCATGCTGGTCTTGCTTCTGAAGGTGGCAGCA 297
||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||
Sbjct 190 AAGTGGCTGATGCTATGACCGTTGAGATGCATGCTGGTCTTGCATCCGACGGTGGTAGCA 249
Query 298 AGCTTAAGATGCTTATTAGCTACGTTGATAATCTTCCTTCTGGGGATGAGACTGGT-TTT 356
| || || |||||||| |||||||||||||||||||||||||||||||| | ||| | |
Sbjct 250 AACTCAAAATGCTTATCAGCTACGTTGATAATCTTCCTTCTGGGGATGAAAAGGGTCTCT 309
Query 357 TTCTATGCGTTGGATCTAGGCGGAACAAACTTCCGTGTTATGCGTGTGCTTCTTGGTGGG 416
|| ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 310 TT-TATGCATTGGACCTAGGTGGAACAAACTTCCGTGTCATGCGTGTGCTTCTTGGCGGG 368
Query 417 AAGCACGACCGTGTTGTTAAACGAGAATTCAAAGAAGAATCTATTCCTCCTCATTTGATG 476
||||| || ||||||||||||| ||||||| |||||| || |||||||| |||||||||
Sbjct 369 AAGCAAGAGCGTGTTGTTAAACAAGAATTCGAAGAAGTTTCGATTCCTCCCCATTTGATG 428
Query 477 ACCGGGAAG-TCACATGAATTATTCGATTTTATCGTTGATGTTCTTGCCAAGTTTGTCGC 535
| | || | ||| ||||||| ||| ||||||||| ||| | |||||| |||||||||||
Sbjct 429 A-CTGGTGGTTCAGATGAATTGTTCAATTTTATCGCTGAAGCTCTTGCGAAGTTTGTCGC 487
Query 536 TACAGAAGGCGAGGACTTTCATCTCCCACCTGGTAGACA-ACGGGAACTAGGTTTTACTT 594
|||||| |||| |||||||||||||| |||||||| | ||||| |||| || ||||
Sbjct 488 CACAGAATGCGAAGACTTTCATCTCCCGGAAGGTAGACAGA-GGGAATTAGGCTTCACTT 546
Query 595 TCTCATTTCCGGTTAAGCAG-CTATCTTTATCCTCTGGCACTCTCATCAACTGGACGAAG 653
|||| ||||||||||||||| || |||||||||||||| | ||||||||| ||||| ||
Sbjct 547 TCTCGTTTCCGGTTAAGCAGACT-TCTTTATCCTCTGGTAGTCTCATCAAATGGACAAAA 605
Query 654 GGCTTTTCCATTGACGATA-CAGTT-GATAAAGATGTTGTTGGAGAACTTGTTAAAGCTA 711
||||||||||| || || | ||||| || ||||||||||||||| |||| ||| ||||
Sbjct 606 GGCTTTTCCATCGAAGA-AGCAGTTGGA-CAAGATGTTGTTGGAGCACTTAATAAGGCTA 663
Query 712 TGGAAAGAGTTGGGCTGGACATGCTTGTCGCAGCGCTTGTTAATGATACCATTGGAACAC 771
|||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||||||
Sbjct 664 TGGAAAGAGTTGGGCTTGACATGCGAATCGCAGCACTTGTTAATGATACCGTTGGAACAC 723
Query 772 TTGCGGGTGGTAGATAC-ACTAACCCGGATGTCGTTGTC-GCAGTTATTTTGGGCACCGG 829
| || |||||||||||| | ||||| |||||| |||| | || |||||||| ||||| ||
Sbjct 724 TAGCTGGTGGTAGATACTA-TAACCAGGATGTTGTTG-CTGCTGTTATTTTAGGCACTGG 781
Query 830 CACAAATGCAGCCTATGTCGAACGTGC-ACATGCAATTCCCAAATGGCATGGTTTGCTAC 888
||||| ||||||||||| || ||||| || || || ||||||||||||||| |||
Sbjct 782 GACAAACGCAGCCTATGTTGAGCGTGCAAC-GGCGATCCCCAAATGGCATGGTCCGCT-T 839
Query 889 CCAAA-TCAGGAGAAATGGTGATCAACATGGAATGGGGAAACTTCAGGTCATCACATCTT 947
||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 840 CCAAACTCAGGAGAAATGGTTATAAACATGGAATGGGGAAACTTCAGGTCATCACATCTC 899
Query 948 CCATTGACAGAGTACGACCACTCTCTAGATGTCGATAGTTTGAATCCTGGTGAACAGATT 1007
||||| ||||||| || ||||| || ||| |||| ||| ||||||| || |||||||||
Sbjct 900 CCATTAACAGAGTTTGATCACTCGCTGGATTTCGAGAGTCTGAATCCAGGCGAACAGATT 959
Query 1008 CTTGAGAAAATCATTTCCGGAATGTATCT-GGGAGAAATCTTGCGTAGAGTTCTTCTGAA 1066
|||||||||||||||||||| ||||| || |||||| || ||||| ||||||||||| ||
Sbjct 960 CTTGAGAAAATCATTTCCGGTATGTA-CTTGGGAGAGATTTTGCGAAGAGTTCTTCTAAA 1018
Query 1067 GATGGCTGAAGAAGCTGCCTTCTTTGGCGATATCGTCCCACCTAAGCTGAAAATACCATT 1126
|||||||||||| ||||| ||||||||||||| ||||||| ||||||||| |||||||||
Sbjct 1019 GATGGCTGAAGATGCTGCTTTCTTTGGCGATACCGTCCCATCTAAGCTGAGAATACCATT 1078
Query 1127 CATCATAAGGACCCCGAACATGTCTGCTATGCACAGTGATACTTCCCCGGATTTGAAGGT 1186
|||||| |||||||| ||||||| |||||||||| || ||||| || || |||||| |
Sbjct 1079 CATCATTAGGACCCCTCACATGTCGGCTATGCACAACGACACTTCTCCAGACTTGAAGAT 1138
Query 1187 TGTAGGAAGCAAG-TTAAAAGACATATTGGAGGTCCAGACTAGTTCTCTGAAGATGAGGA 1245
|||||| |||||| |||| || ||||||||||||| || | ||||||||| ||||| |
Sbjct 1139 TGTAGGGAGCAAGATTAAG-GATATATTGGAGGTCCCTACAACTTCTCTGAAAATGAGAA 1197
Query 1246 AAGTTGTGATCAGCCTATGTAACATCATTGCAAGCCGAGGAGCTCGTTTATCTGCTGCGG 1305
||||||||||||| || || |||||||| |||| |||||| |||||| | |||||||| |
Sbjct 1198 AAGTTGTGATCAGTCTCTGCAACATCATAGCAACCCGAGGCGCTCGTCTCTCTGCTGCTG 1257
Query 1306 GGATCTATGGAATCCTCAAGAAAATAGGAAGAGACGCAACAAAAGATGGAGAAGCT-CAG 1364
| |||||||| ||||| |||||| | |||||||| | || ||||| | || || | |||
Sbjct 1258 GAATCTATGGTATCCTGAAGAAACTGGGAAGAGATACGACCAAAGACG-AGGAGATGCAG 1316
Query 1365 AAATCTGTGATAGCGATGGACGGTGGGCTATTCGAGCATTACACTCAGTTCAGTGAGTCG 1424
||||| || ||||| ||||| ||||| | || ||||||||||||||||| ||||||| |
Sbjct 1317 AAATCGGTTATAGCCATGGATGGTGGATTGTTTGAGCATTACACTCAGTTTAGTGAGT-G 1375
Query 1425 -ATGAAGAGTTCATTGAAAGAGTTGCTTGGAGATGAAGTTTCAGAGA-GTGTTGAAGTGA 1482
||| |||| ||| | |||||||||||||||||||||| ||||| || | ||||||| |
Sbjct 1376 TATGGAGAGCTCACTAAAAGAGTTGCTTGGAGATGAAGCTTCAG-GAAGCATTGAAGTCA 1434
Query 1483 -T-ACTGTCGAATGATGGTTCAGGTGTTGGAGCTGCA-TTACTTGCTGCTTCTCACTCTC 1539
| ||| | |||||||| ||||| |||||||||| || ||||| |||||||||||||
Sbjct 1435 CTCACTC-C-AATGATGGATCAGGCATTGGAGCTGCGCTT-CTTGCAGCTTCTCACTCTC 1491
Query 1540 AGTATCTCGAA 1550
||| || |||
Sbjct 1492 TGTACCTTGAA 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68143448305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5