BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19870.1
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480484 jgi|Araly1|480484|fgenesh2_kg.3__3185__AT2G19870.1 3140 0.0
> Ahg480484 jgi|Araly1|480484|fgenesh2_kg.3__3185__AT2G19870.1
Length=2076
Score = 3140 bits (1700), Expect = 0.0
Identities = 1957/2081 (94%), Gaps = 18/2081 (1%)
Strand=Plus/Plus
Query 1 CTGGTCTTTCCCTTAAACCCT-----AGAAATCTCTGGTAGTCA-ATTGGTCTATGAATG 54
||||||| || |||||||||| | |||||||||||||||| |||||||||| ||||
Sbjct 1 CTGGTCTCTCTCTTAAACCCTAAAAAAAAAATCTCTGGTAGTCAGATTGGTCTATCAATG 60
Query 55 GGAGAATCTTCAACCACCGTTATCCAATTGCGCTTCGTTTGA-AAAATTCACCTATCCCC 113
||||||||||||| ||| || || ||| || |||||||| | ||||||||||| || ||
Sbjct 61 GGAGAATCTTCAAATACCATTTTCTAATAGCTCTTCGTTT-ATAAAATTCACCTTTCTCC 119
Query 114 ACCGGAtttttttttattttt-tCTCTTCTGTTTACTCCG-AATCATGTACTGTAACTTA 171
|||||| || |||||| |||||||||||||||||| ||||||||||||||| |||
Sbjct 120 ACCGGAAAAAGTTGGATTTTTCTCTCTTCTGTTTACTCCGAAATCATGTACTGTAATTTA 179
Query 172 ACAAGAAGCCAAGGCTTTCCAATGGCGATTAGGGTTTCATTACAACAAACAACAATCAAA 231
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 ACAAGAAGCCAAGGATTTCCAATGGCGATTAGGGTTTCATTACAACAAACAACAATCCAA 239
Query 232 AGTTGTCTCCAGTTCTCAAAGTCTTCGTATTTACCAGTTAAGTTTCATTTAAACCCTAAA 291
|| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 AGCTGTTTCCAATTCTCAAAGTCTTTGTATTTACCAGTTAAGTTTCATTTAAACCCTAAA 299
Query 292 GGAAGCA-CCTTTGCACATGTTTCGACTGGTTTAGTTAGTTCTCGTCTTAATTCTATGAA 350
||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GGAAG-AGCCTTTGCAAATGTTTCCACTGGTTTAGTTAGTTCTCGTCTTAATTCTATGAA 358
Query 351 GATTAGAATGTTGAGGAACCCTG-AAGGTGTTAGAGAGTTTTCGAGTTTTGATTCGCAGA 409
|||| ||||||||||||| |||| || |||||||||||||||||||||||||||| ||||
Sbjct 359 GATTGGAATGTTGAGGAAACCTGTAA-GTGTTAGAGAGTTTTCGAGTTTTGATTCTCAGA 417
Query 410 GATTTGGGAAACGAAGTAGTAGTAATAGTAGTAGAGGGAAGTCAGGATTAGGATCGAAAG 469
||||||| ||||||||||||| || |||||||||||||||||||||||||||||| ||||
Sbjct 418 GATTTGGCAAACGAAGTAGTAATAGTAGTAGTAGAGGGAAGTCAGGATTAGGATCAAAAG 477
Query 470 CTTACCGAGATAAGAGAAGTGGCGGTAGTGGCCGTTCTAGTGGAGATTCAATTTGGGTGA 529
||| |||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 478 CTTTCCGAGAGAAGAGAAGTGGTGGTAATGGCCGTTCTAGTGGAGATTCGATTTGGGTGA 537
Query 530 AGTCTGATGAGAAACCAGTGGAAGAAAGGTTTCAGAGAGGTGATAGACCTTCTTGGGAGA 589
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 AGTCTGATGAGAAACCAGTGGAAGAAAGGTTTCAGAGAGGTGATAGGCCTTCTTGGGAGA 597
Query 590 AACGAGATGGTAGAAATGATTCAGG-TTCTGATAGGAGAAGTAGATCCAGAGGTTATGGT 648
||||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||
Sbjct 598 AACGAGATGGTAGAAGTGATTC-GGTTTCTGATAGGAGAAGTAGATTCAGAGGTTATGGT 656
Query 649 GAGACGAGGAATCGAGATTCTTTTCGTGGTCGAAGAGATGATAGAATCAGTGAAGTGGAA 708
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 GAAACGAGGAATCGAGATTCTTTTCGTGATCGAAGAGATGATAGAATCAGTGAAGTGGAA 716
Query 709 GAAGAGAGTAAGAAAGGTGGAGGGAATTCAATTTGGGTGGCTAATGATGATAAACCGGCG 768
||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAACAAAGTAAGAAAGGTAGTGGGAATTCAATTTGGGTGGCTAATGATGATAAACCGGCG 776
Query 769 AAAGAGCAATCGCCGAGAGTTAACAACCGGTCATCTTGGGATGATAGAACAAGAAATCAG 828
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 AAAGAGCAATTGCCGAGAGTTAACAACAGGTCATCTTGGGATGATAGAACAAGAAATCAG 836
Query 829 AACTCTTTTAGTGCCCGAGGTGATGATAGAATCACTGAAGAAGCAGAAGAGGAAAC-AAT 887
||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |
Sbjct 837 AACTCTTTTAGTGCCCGAGGTGATGATAGAATCGCTGAAGAAGTAGAAGACGAAACTGA- 895
Query 888 GAATCATGCCCCTGAAGATGGTGATGGAATCGTTGAAGAAGAACCAGATAATACTAGGTG 947
|||||||| || ||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 896 GAATCATGGCCGTGATGACGGTGATGGAATCATTGAAGAAGAACCAGATAATACTAGGTG 955
Query 948 GTCTGAGATCAAAAATAGATTCAATAGGTATGATGTAAGAGATCAAGGGCGTGACGATGC 1007
|||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||
Sbjct 956 GTCTGAGATCAAAAATAGGTTCAATAGGTATGATGTAAGAGATCAAGGACGCGATAATGC 1015
Query 1008 AGCTTATCGAAACTGGAATAGGCAAGAGAGCTGGGGTAGGAAAACATGGCAAGAGGCGAC 1067
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGCATATCGAAACTGGAATAGGCAAGAGAGCTGGGGTAGGAAAACATGGCAAGAGGCGAC 1075
Query 1068 TGAGTCCAGTGTGCCTAGGCTGGAAGGTGAAGTGGTTTATGGAGTAAGTCCAGTGTTGGC 1127
||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1076 TGAGTCCAGCGTACCTAGGCTGGAGGGTGAAGTGGTCTATGGAGTAAGTCCAGTGTTAGC 1135
Query 1128 TGCACTCTCTGTTGGGAGACGAGAGTTCTATGCTCTCTATGTTCAAGAAGGTTTAGATTT 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1136 TGCACTCTCTGTTGGGAGACGAGAGTTCTATGCTCTCTATGTTCAAGAAGGTTTAGACTT 1195
Query 1188 GAGCAGTAACAATAGGAAGAAGAAAGACAAGAAAGGCTTCGAGAGAGTTTTGAAAATCTC 1247
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 1196 GAGCAGTAACAATAGGAAGAAGAAAGACAAGAAAGGGTTCGAGAAAGTCTTGAAAATCTC 1255
Query 1248 TGAAAAACTTGGGTTAAACATCAAGGAAACTTCGAAGCATGATCTTAACATGGTCGCTGA 1307
||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CGAAAAGCTCGGGTTAAACCTCAAGGAAACTTCGAAGCATGATCTTAACATGGTCGCTGA 1315
Query 1308 TAACAGACCACATCAAGGATTGGTGCTTGATGCTTCTCCATTAGAATTGGTGAAAGTGAA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TAACAGACCACATCAAGGATTGGTGCTTGATGCTTCTCCATTAGAATTGGTGAAAGTGAA 1375
Query 1368 AGAACTAGATCCGATTTCATCAGAGGAAGAGAAATATTCTCTCTGGGTAGCTCTTGATGA 1427
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1376 AGAACTAGATCCGATTTCATCAGAGGAAGAGAAATATTCTCTTTGGGTAGCTCTTGATGA 1435
Query 1428 GGTCACTGATCCACAGAACTTAGGCGCGATCATAAGATCTGCTTACTTTTTTGGAGCCAC 1487
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1436 GGTCACTGATCCGCAGAACTTAGGCGCGATCATAAGATCTGCTTACTTTTTTGGAGCAAC 1495
Query 1488 GGGTGTTGTGGTATGCGCTAAAAACTCAGCTCCATTAAGTGCAGTTGTGAGTAAAGCAAG 1547
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1496 GGGTGTTGTGGTATGCGCGAAAAACTCAGCTCCATTAAGTGCGGTTGTGAGTAAAGCAAG 1555
Query 1548 CGCTGGATCACTCGAAGTAATGGAACTCAGGTACTGCAAAAACATGATGCAGTTTTTGGA 1607
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1556 TGCTGGATCACTCGAAGTTATGGAACTCAGGTACTGCAAAAACATGATGCAGTTTTTAGA 1615
Query 1608 AGCTTCTGCTGAGAACGGCTGGCGTGTGGTTGGTGGTTCGGTATCACCAAAGGCTGTTGC 1667
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1616 AGCTTCTGCTGAGAACGGTTGGCGTGTAGTTGGTGGTTCGGTATCTCCAAAGGCTGTTGC 1675
Query 1668 TTTGAACGAGGTTTTACCTGGCAGCCCAACAATTCTTGTCTTGGGTAATGAAGGAACGGG 1727
|||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1676 TTTGAACGAGGTTTTACCCGGCAGCCCGACAATACTTGTCTTGGGGAATGAAGGAACGGG 1735
Query 1728 TTTAAGGCCATTAGTAGAGCGATCATGTACCGATTTAGTGAGGATTAGTGGTAATATGCC 1787
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1736 TTTAAGGCCATTAGTAGAGCGATCATGTACCGAATTAGTCAGGATTAGTGGTAATATGCC 1795
Query 1788 CAACGAAGTTGCAGTAACAGAGTCTGATGATGCGGAAGGTGAAGGTTTCAGATCATTTCT 1847
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CAATGATGTTGCAGTTACAGAGTCTGATGATGCGGAAGGTGAAGGTTTCAGATCATTTCT 1855
Query 1848 TGCTGTGGAGAGCTTGAACGTGAGTGTTGCAGCTGGTTTGTTTCTTCATCACTTAATAGG 1907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 TGCTGTGGAGAGCTTGAACGTGAGTGTTGCAGCTGGTTTGTTTCTTCATCACTTAATAGG 1915
Query 1908 CAACAAAGCAAGTGCTTGATTCCTCCTTGAGTTCTTCTTATCAATTACATTTTTGAACCA 1967
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 1916 CAACAAAGCAAGTGCTTGATTCCTCCTTGCGTTCTTCGTATCAATTACATTTTTGCACCA 1975
Query 1968 AACTTGGGATTTGCTCTTTACTTGTATAACTTTATGCTCTCATTCTATGGTTTGTTTTCC 2027
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 AACTTGGGATTTGCTCTCTACTTGTATAACTTTATGCTCTCATTCTATGGTTTGTTTTCC 2035
Query 2028 TAACATGACCTGATCTATCTATGCTCGAAAAGCTGCATTAT 2068
|| |||||||||||||||||||||||||||||| |||||||
Sbjct 2036 TATCATGACCTGATCTATCTATGCTCGAAAAGCCGCATTAT 2076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77856460780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5