BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G19893.1

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg906390 jgi|Araly1|906390|Al_scaffold_0003_3518                    106    7e-23


> Ahg906390 jgi|Araly1|906390|Al_scaffold_0003_3518
Length=270

 Score =  106 bits (57),  Expect = 7e-23
 Identities = 67/71 (94%), Gaps = 3/71 (4%)
 Strand=Plus/Plus

Query  1   ATGGCCAAGCCTTGTGCTGCA--T-TTCTTGTCTTCCTCTGCCTTTCCATGCTCATCCTG  57
           |||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||
Sbjct  1   ATGGCCAAGCCTTGTGCTGCATTTCTTCTTGTCTTCCTCTGCCTTTCCATGCTCATCCTG  60

Query  58  TCAATCCCTGA  68
           |||| ||||||
Sbjct  61  TCAACCCCTGA  71



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7714028722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5