BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19900.1
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931401 jgi|Araly1|931401|scaffold_303858.1 2970 0.0
> Ahg931401 jgi|Araly1|931401|scaffold_303858.1
Length=1786
Score = 2970 bits (1608), Expect = 0.0
Identities = 1723/1780 (97%), Gaps = 2/1780 (0%)
Strand=Plus/Plus
Query 58 TTCATTGATCCTTTCAAGATGGAGAAAGTGACCAACTCAGACTTGAAATCCTCTGTTGAT 117
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 TTCATTGATCCTTTCAAGATGGAGAAAGTGACCAACTCAGATTTGAAATCCTCTGTTGAT 62
Query 118 GGTGGCGTTGTTGATGTGTATGGAGAAGATTCAGCCACCATTGAGCACAACATAACTCCT 177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGTGGCGTTATTGATGTGTATGGAGAAGATTCAGCCACCATTGAGCACAACATAACTCCT 122
Query 178 TGGTCTCTCTCTGTTTCTAGTGGATATTCATTGCTGAGAGATCCTCGCTACAACAAAGGA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TGGTCTCTCTCTGTTTCTAGTGGATATTCATTGCTGAGAGATCCTCGCTACAACAAAGGA 182
Query 238 CTTGCTTTCACTGAGAAAGAGAGAGACACTCATTACTTGCGTGGTCTTCTCCCTCCAGTT 297
|||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||
Sbjct 183 CTTGCTTTCACTGAGAAAGAGAGAGAGACGCACTACTTGCGTGGTCTTCTTCCTCCAGTT 242
Query 298 GTTCTTGATCAAAAGCTTCAGGAGAAGAGGCTGTTGAACAATATCCGACAATATCAATTC 357
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 243 GTTCTTGATCAAAAGCTTCAGGAGAAGAGGCTGATGAGCAATATCCGACAATATCAATTT 302
Query 358 CCATTACAAAAGTACATGGCTCTGACAGAACTTCAGGAAAGAAACGAGAGACTGTTTTAC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CCATTACAAAAGTACATGGCTCTGACAGAACTTCAGGAAAGAAACGAGAGACTGTTTTAT 362
Query 418 AAGCTATTGATAGATAATGTTGAGGAGCTACTTCCTATTGTTTATACTCCAACTGTTGGT 477
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 363 AAGCTCTTGATAGATAATGTTGAGGAGCTTCTTCCTATTGTTTATACTCCAACTGTTGGT 422
Query 478 GAAGCTTGTCAGAAATTTGGAAGTATTTTCAGGCGACCTCAGGGTTTATTCATCAGTTTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GAAGCTTGTCAGAAATTTGGAAGTATTTTCAGGCGACCTCAGGGTTTATTCATCAGTTTA 482
Query 538 AAAGACAAGGGAAAGATTCTAGATGTGTTAAAGAACTGGCCTGAAAGGAACATACAGGTT 597
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 483 AAAGACAAGGGAAAGATTCTAGATGTGTTAAAGAACTGGCCTGAAAGGAATATACAAGTT 542
Query 598 ATTGTTGTTACTGACGGTGAAAGGATTTTAGGATTAGGAGATCTTGGATGTCAGGGGATG 657
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 543 ATTGTTGTTACTGATGGTGAAAGGATCTTGGGATTAGGAGATCTTGGATGTCAGGGGATG 602
Query 658 GGTATACCGGTTGGTAAGTTGGCGTTATATTCAGCACTTGGAGGTGTTCGTCCTTCAGCG 717
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 603 GGTATACCGGTTGGTAAATTGGCGTTATATTCAGCACTTGGAGGCGTTCGTCCTTCTGCG 662
Query 718 TGTTTACCTGTCACCATTGATGTGGGAACAAACAATGAGAAACTGTTGAATGATGAGTTC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TGTTTACCTGTCACCATTGATGTGGGAACAAACAATGAGAAACTGTTGAATGATGAGTTC 722
Query 778 TACATAGGACTCAGGCAAAAGAGAGCAACGGGACAGGAATATAGTGAACTCTTGAATGAA 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 723 TACATAGGACTCAGGCAAAAGAGAGCAACGGGACAGGAATATAGCGAACTCTTGAATGAA 782
Query 838 TTCATGAGTGCTGTGAAACAGAACTATGGTGAAAAAGTTCTTATTCAGTTTGAAGATTTT 897
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 783 TTCATGAGTGCTGTGAAACAGAACTATGGCGAAAAAGTTCTTATTCAGTTTGAAGATTTT 842
Query 898 GCTAATCATAATGCCTTTGAGTTGCTTGCAAAATACAGCGATACTCATCTCGTCTTCAAC 957
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 843 GCTAATCATAATGCCTTTGAGTTGCTTGCAAAATACCGCGATACTCATCTCGTCTTCAAC 902
Query 958 GATGATATACAGGGGACAGCATCAGTTGTTTTAGCAGGATTAGTTTCCGCACAGAAGTTA 1017
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 903 GATGATATACAGGGGACAGCATCAGTTGTTTTAGCGGGATTAGTTTCCGCACAGAAGTTA 962
Query 1018 ACGAATAGCCCACTTGCAGAGCATACCTTCCTCTTTCTTGGTGCTGGTGAAGCTGGAACT 1077
|| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 963 ACAAATAGTCCACTTGCAGAGAACACCTTCCTCTTTCTTGGTGCTGGTGAAGCTGGAACT 1022
Query 1078 GGAATAGCAGAACTCATAGCTCTCTATATGTCAAAACAGATGAATGCTTCGGTAGAGGAA 1137
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1023 GGAATAGCAGAACTCATAGCTCTCTATATATCAAAACAGATGAATGGTTCGGTAGAGGAA 1082
Query 1138 AGCCGCAAGAAAATCTGGCTTGTTGATTCCAAGGGATTGATTGTTAACTCCCGCAAAGAT 1197
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1083 AGCCGCAAGAAAATCTGGCTTGTTGATTCCAAGGGACTGATTGTTAACTCCCGCAAAGAT 1142
Query 1198 TCACTTCAAGACTTTAAGAAACCATGGGCTCATGAACATGAACCAGTCAAAGACCTCTTA 1257
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TCACTTCAAGCCTTCAAGAAACCATGGGCTCATGAACATGAACCAGTCAAAGACCTCTTA 1202
Query 1258 GGTGCTATCAAGGCAATAAAACCGACTGTTCTGATTGGATCTTCTGGCGTTGGACGGTCT 1317
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1203 GGTGCTATCAAGGCAATAAAACCGACTGTTCTGATTGGATCGTCTGGCGTTGGACGGTCT 1262
Query 1318 TTTACAAAAGAAGTGATAGAAGCCATGTCCTCCATTAATGAGAGACCACTGATAATGGCT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 TTTACAAAAGAAGTGATAGAAGCCATGTCCTCCATTAATGAGAGACCACTGATAATGGCT 1322
Query 1378 CTCTCTAACCCCACAACACAATCTGAATGTACAGCCGAAGAAGCTTATACTTGGAGTAAG 1437
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1323 CTCTCTAACCCAACAACACAATCAGAATGTACAGCTGAAGAAGCTTATACTTGGAGTAAG 1382
Query 1438 GGCCGTGCCATTTTTGCTAGTGGAAGCCCTTTTGATCCAGTTGAGTATGAAGGAAAGGTG 1497
|| ||||||||||| || |||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1383 GGTCGTGCCATTTTCGCAAGTGGAAGTCCTTTTGATCCAGTGGAGTATGAAGGAAATGTG 1442
Query 1498 TTTGTATCTACACAGGCGAACAATGCGTACATATTCCCGGGCTTTGGACTTGGTTTGGTT 1557
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1443 TTTGTATCGACACAGGCAAACAATGCGTACATATTCCCGGGTTTTGGACTTGGTTTGGTT 1502
Query 1558 ATCTCTGGAGCAATACGGGTACATGACGATATGCTTCTAGCTGCTGCTGAGGCATTAGCT 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 ATCTCTGGAGCAATACGGGTACATGACGATATGCTTCTAGCTGCTGCTGAGGCATTAGCT 1562
Query 1618 GGACAAGTAAGCAAAGAGAACTATGAGAAAGGAATGATATATCCTTCATTCTCTTCCATC 1677
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1563 GGACAAGTAAGCGAAGAGAACTATGAGAAAGGGATGATATATCCTTCATTCTCTGCCATC 1622
Query 1678 CGGAAAATATCAGCTCAGATTGCAGCCAATGTAGCAACTAAGGCGTATGAACTAGGAT-T 1736
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1623 CGGAAAATATCAGCTCATATTGCAGCCAATGTAGCAACTAAGGCATATGAACTAGG-TCT 1681
Query 1737 GGCAGGGCGGCTTCCACGGCCGAAAGATATTGTCAAATGTGCAGAGAGTAGCATGTACAG 1796
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1682 GGCGGGGCGGCTTCCACGGCCGAAAGATATAGTCAAGTGTGCAGAGAGTAGCATGTACAG 1741
Query 1797 CCCCACATACCGTCTCTACCGTTGAAAGTTGAAACTCAAG 1836
|||||| |||||||||||||||||||||||||||||||||
Sbjct 1742 CCCCACCTACCGTCTCTACCGTTGAAAGTTGAAACTCAAG 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76256670490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5