BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19910.1
Length=2979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480480 jgi|Araly1|480480|fgenesh2_kg.3__3181__AT2G19930.1 2158 0.0
Ahg931400 jgi|Araly1|931400|scaffold_303857.1 1615 0.0
Ahg319567 jgi|Araly1|319567|fgenesh1_pm.C_scaffold_3002583 1365 0.0
> Ahg480480 jgi|Araly1|480480|fgenesh2_kg.3__3181__AT2G19930.1
Length=3107
Score = 2158 bits (1168), Expect = 0.0
Identities = 2221/2712 (82%), Gaps = 141/2712 (5%)
Strand=Plus/Plus
Query 322 TGCAGGGCTTC-TCAAG-A-TG-TGTCTCTTGATT-TGGAAACTCCCTCTCCTAAGTTC- 375
||||||| ||| ||||| | | ||||| |||||| | || |||| ||||||||| ||
Sbjct 322 TGCAGGG-TTCTTCAAGAAGAGATGTCTGTTGATTCT-GATGCTCCTTCTCCTAAG-TCT 378
Query 376 ATGAAAAGAGAAGAAAATGGTGGATCTAAGTACATTCCTCCGCTTTTAGCTTTGGGTGAA 435
||||||| ||||||||||| |||||| | ||||||| | ||| ||||||||||||||
Sbjct 379 TTGAAAAGTGAAGAAAATGGAGGATCTCTGCACATTCCACAGCTGGTAGCTTTGGGTGAA 438
Query 436 CTTGAATTCAAGAAGGCGTTTCTGTTGCTTAGCTATATTGGAGGGGAATC-CCTTGTTGA 494
|||||||| |||||||||||| |||| |||||||||||| |||| || | | || |
Sbjct 439 CTTGAATTTAAGAAGGCGTTTTTGTTACTTAGCTATATTCCAGGGCAA-CAAC-TG--G- 493
Query 495 G-GAGGTTATATCTGGTGATCAGA-TCAGAAAATGGAAGGATTTGCCAATGGTTTCATAT 552
| |||||| | ||| |||| ||| || || |||||| ||||||||||||||| |||||
Sbjct 494 GCCAGGTTACAACTGCTGATGAGATTC-GACTATGGAAAGATTTGCCAATGGTTGCATAT 552
Query 553 GAAGCAGCGGTTTGGAACCGGTTGGGACAGCGTTATTGTTCCCCCA-A-GGAGCGAAGAA 610
|||||||| |||||| |||| ||||| | || |||||| | || || | || ||||| |
Sbjct 553 GAAGCAGCCGTTTGGGACCGTTTGGGCCGGCATTATTG-T-CCTCAGACAGACCGAAG-A 609
Query 611 GGCCACTTG-AAGGGGATAGTGGGATGACCCATTACTATCAATGTCATGTTGCTACCGAT 669
| ||| || |||||||||| | ||||||||||||||| |||||||||||| |||||
Sbjct 610 -G--TGTTGCAATGGGATAGTGGCAAGACCCATTACTATCAGTGTCATGTTGCTCCCGAT 666
Query 670 GGTAGTTACAAATTCAAGGGTCATCTTCTGGAGA-ACACTGGAACACACCTGCACAAGGT 728
||||| |||| ||||||||| | ||||| || | |||||||||||||| ||||||||||
Sbjct 667 GGTAGCTACACATTCAAGGGCCCCCTTCTTGA-ACACACTGGAACACACTTGCACAAGGT 725
Query 729 TTTGGGTGATGATAACGTTCTAACTGTCAAATTTGATAAAGT---GTTAGGCGTGGA--A 783
||||||||||| || ||| ||||||||||||| | | || | | | | | |
Sbjct 726 CTTGGGTGATGAAAATGTTTTAACTGTCAAATTCGCGGATGTCCCGAAAAAC-T-CATCA 783
Query 784 ACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAAGAATGGTATCATGGTT 843
|| ||| | ||||||| ||| | ||||||||||| ||||| ||||| ||||||||| ||
Sbjct 784 ACATATAGCAATGACCGTTATTTTACATACAAAGAAATTGCCAAGAACGGTATCATGATT 843
Query 844 GGGTTACGCCGTTATCGA-TTTTTTGTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAA 902
|| ||||| ||||||| | ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 844 GGTTTACGTCGTTATC-AGTTTTTTGTTTTCAAAGATGGAGGAAAAGAGGAAAAGAAGAA 902
Query 903 AGATGTTTCTACAAAGGGAGTTAAATGCTACTTTATACGCACAGACTCGACAGCTTCAAT 962
|||| ||||||||||| ||| |||||||||||||||||||| | ||| |||||||| |
Sbjct 903 AGATCTTTCTACAAAGAAAGTGAAATGCTACTTTATACGCACGGGCTCTACAGCTTC-TT 961
Query 963 -TGATATGCAAAATCCCTATATCTTCGCCGGAAAGTCAATGCATGAAGCACGTATGCATT 1021
||||||| ||||||||||||| || | ||||||||||| || ||||| ||||||||||
Sbjct 962 GTGATATGGAAAATCCCTATATTTTTACTGGAAAGTCAATTCACGAAGCTCGTATGCATT 1021
Query 1022 TTATGCATGTGAATACTTTG--TCATCTTTGCCCAACTATATGTCAAGGTTTTCTTTAAT 1079
||||||| ||| || | | || ||||| | || |||||| |||||||||| |||||
Sbjct 1022 TTATGCACGTGCAT-C-GAGCACCAACTTTGGCGAATTATATGGCAAGGTTTTCCTTAAT 1079
Query 1080 TCTGTCAAAGACTAAAACGCTCGAAGTTGACATGACTGGAATTACCTTTGAGCAAATCGA 1139
||| ||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| ||
Sbjct 1080 TCTCTCAAAGACTAAAACGCTTGAAGTTGACATGACTGGGATTACCTTTGATCCAATTGA 1139
Query 1140 TGATATACACTGCCATGATCAAGATGATAAGGATGTTCTTGACAAGAATGGGAAACCTTG 1199
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1140 TGATATACACTGCCATGATCAAGATGGGAAAGATGTTCTTGACAAGAACAAAAAACCTTG 1199
Query 1200 TATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTTGCTCGGATGTGTCCAGTTAA 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1200 TATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTTGCTCGGATGTGTCCCCTAAA 1259
Query 1260 TATTTTTAAAGGGAAATCTATGAGAAGTAACAATATTCAGAGTAAGAATTTAAATTTTGA 1319
||| ||||||||| || || || | || || ||| | |||| ||
Sbjct 1260 TATATTTAAAGGG-AA---AT-----GT--C-----TC--AG-AAG--TGAAAATATT-C 1297
Query 1320 AGGACAGGGACCATGTGGCCAAGAGCCGCCTCTGCTGATCCAGTTTCGGATTTTTTATAA 1379
|||| | | | ||| |||||| |||||||| |||||||||||||||| |||||| |
Sbjct 1298 AGGA-A--G--CTTGTAACCAAGACCCGCCTCTTTTGATCCAGTTTCGGATGTTTTATGA 1352
Query 1380 TGGCTATGCTGTTAAGGGAACTTTTCTCACAAACAAGAAACTTCCTCCTCGGACTGTCCA 1439
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1353 TGGCTATGCTGTTAAGGGAACTTTTCTCTTAAACAAGAAACTTTGTCCTCGGACTGTCCA 1412
Query 1440 GGTTCGACCTTCTATGATCAAGGTGTATGAAGATCGAACCTTGTCAAATCTTAGTACCTT 1499
|||||||||||| ||||||||||||| | |||||| | ||||||||| |||| |||||
Sbjct 1413 GGTTCGACCTTCGATGATCAAGGTGTCTAAAGATCCCTCATTGTCAAATTTTAGCACCTT 1472
Query 1500 TAACTCCTTGGAGGTAGTCACTACAAGTAATCCACCAAGAAAG-GCGAGGCTATCAAGAA 1558
|||| | ||||||||||| |||||||||||||||||||| ||| | | |||||||| ||
Sbjct 1473 TAACGCTTTGGAGGTAGTAACTACAAGTAATCCACCAAG-AAGAACAAAGCTATCAAAAA 1531
Query 1559 ATTTGGTGGCGCTACTTAGTTATGGAGGAGTCCCTAATGACTTCTTTTTGAATATATTGC 1618
||||||| ||||| ||||| ||||||||| |||||||||| ||||||||| |||||||||
Sbjct 1532 ATTTGGTTGCGCTGCTTAGCTATGGAGGAATCCCTAATGAATTCTTTTTGGATATATTGC 1591
Query 1619 GCAACACGCTGGAAGAGTCCAAAACCATATTCTACAGTGAACGTGCTGCGTTTAAAGCTG 1678
|||||||||||||||||| |||| ||||||||||| ||| ||||||| |||| | ||
Sbjct 1592 TCAACACGCTGGAAGAGTCTAAAAGCATATTCTACAACAAACATGCTGCGCTTAATGTTG 1651
Query 1679 C-CATTAATTAT--GG----GGACGACCAGTACACTGCAGATATGATCTTGGTTGGTATC 1731
| | |||||||| || |||||||||| || | ||| | ||||| ||||||||||||
Sbjct 1652 CTC-TTAATTATGGGGAAATGGACGACCAGAACGCCGCACAGATGATATTGGTTGGTATC 1710
Query 1732 CCTCTTGATGAACCATACTTGAAGGATCGTCTTTCTTA-TC-TCTTAAAGACAGAGAGGA 1789
|| ||||| |||||| |||||||| ||| ||| || || || || |||||||||||| |
Sbjct 1711 CCCCTTGACGAACCACACTTGAAGAATCATCTGTC-TATTCTTC-TAAAGACAGAGAAAA 1768
Query 1790 ATGCTCTCAAAGCAGGAAGGTTTCCTATTGA-CGAATCATACTATATCATGGGCACAGTG 1848
||| ||||||||||||||| ||||| ||| ||||||||||||| ||||||| ||||||
Sbjct 1769 ATGATCTCAAAGCAGGAAGACTTCCT-GTGACCGAATCATACTATCTCATGGGGACAGTG 1827
Query 1849 GATCCCACCGGGGAGCTTAAGGAAAATGAAATCTGTGTCATCCTCCATTCTGGCCAAATT 1908
|||||||| || ||||| |||||| ||||| ||||||| ||||| | ||||| ||||||
Sbjct 1828 GATCCCACTGGAGAGCTAAAGGAAGATGAAGTCTGTGTAATCCTTGAGTCTGGGCAAATT 1887
Query 1909 TCCGGG-GATGTGTTAGTTTACAGAAATCCTGGATTACATTTTGGAGACATACATGTACT 1967
| |||| || ||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 1888 T-CGGGAGAAGTGTTAGTTTATAGAAATCCTGGATTACATTTTGGAGACATACATATTCT 1946
Query 1968 TAAGGCTACCTATGTTAAGGCCTTAGAAGACTATGTTGGAAATGCCAAGTTTGCTGTGTT 2027
|||||||| |||||||||||||| ||||| |||||||||||| |||||| |||||||||
Sbjct 1947 CAAGGCTACATATGTTAAGGCCTTGGAAGAGTATGTTGGAAATTCCAAGTATGCTGTGTT 2006
Query 2028 CTTCCCTCAGAAAGGTCCAAGATCCTTGGGCGATGAGATTGCTGGTGGTGACTTTGATGG 2087
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2007 CTTCCCTCAGAAAGGTCCAAGATCCTTGGGCGACGAGATTGCAGGTGGTGACTTTGATGG 2066
Query 2088 CGATATGTATTTCATATCCAGAAATCCCA-AGCTACTGGAACACTTCAAGCCAAGTGAAC 2146
||||||||||||||||| ||||| ||| |||| || ||||||||||| ||||||||||
Sbjct 2067 TGATATGTATTTCATATCAAGAAA-CCCTGAGCTGCTTGAACACTTCAAACCAAGTGAAC 2125
Query 2147 CATGGGTGAGTTCTT-CTAAACCTAGTAAAATTTACTGTGGAAGAAAGCCAAGTGAACTA 2205
| |||||||||| | || || ||||||| | ||| ||| ||| |||||| | ||
Sbjct 2126 CGTGGGTGAGTT-TGACTCCTCCCAGTAAAAGTAACTCTGGTAGAGCGCCAAGCCAGCTT 2184
Query 2206 TCAGAAGAAGAGTTGGAAGAAGAGCTATTCAAAATGTTCTTAAAAGCAAGATTT--TGTA 2263
||| |||||||||||||||||| || ||| |||||||| | || ||| ||||| ||
Sbjct 2185 TCACCAGAAGAGTTGGAAGAAGAACTTTTCGAAATGTTCCTGAAGGCAGGATTTCATGCC 2244
Query 2264 AGAGAGACGTTATAGGGATGGCTGCAGATTGCTGGCTAGGAATAATGGACC-CTTTCCTC 2322
|| | | ||||||||||| ||||||||| ||||| || ||||||||||| ||| |||
Sbjct 2245 AGC-A-ATGTTATAGGGATAGCTGCAGATAGCTGGTTAACAATAATGGACCGCTT-CCTA 2301
Query 2323 AC-CTTAGGAGATGAGAGTGCTAAGGAAAAATATGAAAGGAAGAAGAATATTCTTAAGTT 2381
| || |||||||||||| ||| |||||||| ||||| ||||||||| || || ||| |
Sbjct 2302 ATACT-AGGAGATGAGAGAGCTGAGGAAAAAGCTGAAATGAAGAAGAAAATGCTAAAGCT 2360
Query 2382 GATTGATATATACTATGATGCTCTTGATGCACCAAA-AAAGGGGGCTAAGGT-TGATCTC 2439
|||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||||
Sbjct 2361 GATTGATATATACTATGATGCTCTTGATGCACCAAAGAAAGGGGA-TAAGGTCT-ATCTT 2418
Query 2440 CCGCCCGATCTAGAGATCAAAAAT-TTTCCACATTACATGGAGCGTGACCCTAAGAGAGA 2498
|| ||| || ||| | | || |||||||||||||||||||| || || | ||
Sbjct 2419 CCAAACGAGCT-GAGGCCCGACATCTTTCCACATTACATGGAGCGGGAGA--AA-A-AG- 2472
Query 2499 TTTCAGGTCCACTTCTATTCTTGGATTAATCTTTGACACTGTGGATTCTCATA-ATGCAG 2557
|| || |||||||||||||||||||||||||| |||| ||| | || || | | |||
Sbjct 2473 TT-CAAGTCCACTTCTATTCTTGGATTAATCTATGACTTTGTTAAATCACAGACAA-CAG 2530
Query 2558 AGGAACCCCCACCATC-T--GAAATCAGTAAACTCTGGTATTTTGAAGATGAACCGGTCC 2614
|||||||| ||||||| | || |||||||||||| | ||| |||||||| ||||||
Sbjct 2531 AGGAACCCACACCATCATCTGAGATCAGTAAACTCCCCTGTTTCGAAGATGAGCCGGTCT 2590
Query 2615 CTA-AGTCTCACATGGATAAATTTACATCC-TGGTACGAGAATTACCGAAGTGAAATGTC 2672
| | ||| ||| ||||| |||| || | | ||||| || |||||| ||| ||| ||| |
Sbjct 2591 C-AGAGTTTCATATGGAGAAATGTAGA-CGGTGGTATGATAATTACAGAACTGAGATGAC 2648
Query 2673 CCAAGCGATGATGGAAACTGATAAGGTTAAGAGGAATCAATTAACCAATGAAGTTATCCA 2732
||| ||||||| |||||||||||| | || | ||| ||||||||||||| ||
Sbjct 2649 CCAGGCGATGA---AAACTGATAAGGAT--GA--A-TCAG----CCAATGAAGTTATTCA 2696
Query 2733 GAGGTACAAGCAGGATTTCTATGGCGCTGCAGGGTTTGAAGACAGCAATAAAAGTCTGGA 2792
||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2697 GAGATACAAGCAGGAGTTCTATGGTGCTGCAGGGTTTGAAGACAGCAAGAAAAGTCTGGA 2756
Query 2793 AGAACTCTACCCCCAAGCCTTGGCACTCTACAACG-TCGTTTACGATTATGCCATTCAGG 2851
||||||||| || |||||| | ||||| ||||| | |||||||||||||||||||||| |
Sbjct 2757 AGAACTCTATCCGCAAGCCCTCGCACTGTACAA-GATCGTTTACGATTATGCCATTCATG 2815
Query 2852 AAGGTGTTGCGAAATGTACATTTGCCTGGAATGTTGCAGGACCGGTCCTGTGCAAATTTT 2911
||||||| |||||||| |||| |||||| || ||||||||||| ||||||| ||| |
Sbjct 2816 CAGGTGTTTCGAAATGTGGGTTTGTCTGGAAGGTAGCAGGACCGGTACTGTGCAGATTCT 2875
Query 2912 ACCT--T-AAGAAAACGAAGGATAAATCAGTAGTG-GCTTCAACGTCTGTGCTTAAAAAG 2967
| || | ||||||| | |||| ||||| ||||| | | || | |||||||||||| ||
Sbjct 2876 ATCTAATGAAGAAAATGCAGGAGAAATCTTTAGTGTG-TGCACCATCTGTGCTTAAAGAG 2934
Query 2968 CTTTTGGGTTGA 2979
|||| |||||||
Sbjct 2935 CTTTGGGGTTGA 2946
> Ahg931400 jgi|Araly1|931400|scaffold_303857.1
Length=2845
Score = 1615 bits (874), Expect = 0.0
Identities = 998/1059 (94%), Gaps = 4/1059 (0%)
Strand=Plus/Plus
Query 1923 AGTTTACAGAAATCCTGGATTACATTTTGGAGACATACATGTACTTAAGGCTACCTATGT 1982
||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1769 AGTTTACAGGAATCCTGGATTACATTTTGGAGATATACATGTGCTTAAGGCTACATATGT 1828
Query 1983 TAAGGCCTTAGAAGACTATGTTGGAAATGCCAAGTTTGCTGTGTTCTTCCCTCAGAAAGG 2042
||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||
Sbjct 1829 TAAGGCCTTAGAAGACTATGTCGGAAATTCCAAGTATGCTGTGTTCTTCCCTCAGAAAGG 1888
Query 2043 TCCAAGATCCTTGGGCGATGAGATTGCTGGTGGTGACTTTGATGGCGATATGTATTTCAT 2102
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1889 TCCGAGATCCTTGGGTGATGAGATTGCAGGTGGTGACTTTGATGGCGATATGTATTTCAT 1948
Query 2103 ATCCAGAAATCCCAAGCTACTGGAACACTTCAAGCCAAGTGAACCATGGGTGAGTTCTTC 2162
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1949 ATCCAGAAATCCCAAGCTACTGGAATACTTCAAGCCAAGTGAACCATGGGTGAGTTCTTC 2008
Query 2163 TAAACCTAGTAAAATTTACTGTGGAAGAAAGCCAAGTGAACTATCAGAAGAAGAGTTGGA 2222
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2009 TAAACCTAGTAAAATTTACTCTGGAAGAAAGCCAAGTGAACTATCAGAAGAAGAGTTGGA 2068
Query 2223 AGAAGAGCTATTCAAAATGTTCTTAAAAGCAAGATTTTGTAAGAGAGACGTTATAGGGAT 2282
||||||||| ||||||||||||||||| ||||||||| || ||| ||||||||||||||
Sbjct 2069 AGAAGAGCTTTTCAAAATGTTCTTAAATGCAAGATTTCGTCCGAGCGACGTTATAGGGAT 2128
Query 2283 GGCTGCAGATTGCTGGCTAGGAATAATGGACCCTTTCCTCACCTTAGGAGATGAGAGTGC 2342
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 2129 GGCTGCAGATTGCTGGCTAGGAATAATGGACCCTCTCCTCACCTTAGGAGCTGAGAGTGC 2188
Query 2343 TAAGGAAAAATATGAAAGGAAGAAGAATATTCTTAAGTTGATTGATATATACTATGATGC 2402
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2189 GAAGGAAAAATATGAAAGGAACAAGAATATTCTTAAGTTGATTGATATATATTATGATGC 2248
Query 2403 TCTTGATGCACCAAAAAAGGGGGCTAAGGTTGATCTCCCGCCCGATCTAGAGATCAAAAA 2462
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 2249 TCTTGATGCACCAAAAAAGGGGGCTAAGGTCGATCTCCCACCCGACCTAGAGATCAAAAA 2308
Query 2463 TTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCCACTTCTATTCTTGG 2522
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2309 TTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCGACTTCTATTCTTGG 2368
Query 2523 ATTAATCTTTGACACTGTGGATTCTCATAATGCAGAGGAACCCCCACCATCTGAAATCAG 2582
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 2369 ATTAATCTTTGACACTGTAGATTCCCAGAATGCAGAGGAACCCCCACCATCTGAAATCAG 2428
Query 2583 TAAACTCTGGTATTTTGAAGATGAACCGGTCCCTAAGTCTCACATGGATAAATTTACATC 2642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429 TAAACTCTGGTATTTTGAAGATGAACCGGTCCCTAAGTCTCACATGGATAAATTTACATC 2488
Query 2643 CTGGTACGAGAATTACCGAAG-TGAAATGTCCCAAGCGATG-ATGGAAACTGATAAGGTT 2700
|||||||||||||||| || | ||||||||||||||||||| | ||||||||||||||||
Sbjct 2489 CTGGTACGAGAATTACAGA-GCTGAAATGTCCCAAGCGATGGA-GGAAACTGATAAGGTT 2546
Query 2701 AAGAGGAATCAATTAACCAATGAAGTTATCCAGAGGTACAAGCAGGATTTCTATGGCGCT 2760
|||| ||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2547 AAGAAGAAGCAATTAGCCAATGAAGTTATCCAGAGATACAAGCAGGATTTCTATGGCGCT 2606
Query 2761 GCAGGGTTTGAAGACAGCAATAAAAGTCTGGAAGAACTCTACCCCCAAGCCTTGGCACTC 2820
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2607 GCAAGGTTTGAAGACAGCAACAAAAGTCTGGAAGAACTCTACCCCCAAGCCTTGGCACTC 2666
Query 2821 TACAACGTCGTTTACGATTATGCCATTCAGGAAGGTGTTGCGAAATGTACATTTGCCTGG 2880
|||||| ||||||| |||| |||| ||| ||||||||| ||||||| | |||| ||||
Sbjct 2667 TACAACATCGTTTATGATTTTGCCTTTCCCGAAGGTGTTTCGAAATGCGCGTTTGTCTGG 2726
Query 2881 AATGTTGCAGGACCGGTCCTGTGCAAATTTTACCTTAAGAAAACGAAGGATAAATCAGTA 2940
|| ||||||||||||||||| |||| ||||||||||||||||||| |||| |||| ||||
Sbjct 2727 AAGGTTGCAGGACCGGTCCTATGCAGATTTTACCTTAAGAAAACGCAGGAGAAATTAGTA 2786
Query 2941 GTGGCTTCAACGTCTGTGCTTAAAAAGCTTTTGGGTTGA 2979
||||||||||| ||||||||||||||| ||| |||||||
Sbjct 2787 GTGGCTTCAACCTCTGTGCTTAAAAAGATTTGGGGTTGA 2825
Score = 1288 bits (697), Expect = 0.0
Identities = 772/809 (95%), Gaps = 2/809 (0%)
Strand=Plus/Plus
Query 868 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGATGTTTCTACAAAGGGAGTTAAA 927
|||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||
Sbjct 963 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGACGCTGCTACAAAGGGAGTGAAA 1022
Query 928 TGCTACTTTATACGCACAGACTCGACAGCTTCAATTGATATGCAAAATCCCTATATCTTC 987
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 1023 TGCTACTTTATACGCACAGACTCGACAGCTTCAAATGATATGCGAAACCCCTATATCTTC 1082
Query 988 GCCGGAAAGTCAATGCATGAAGCACGTATGCATTTTATGCATGTGAATACTTTGTCATCT 1047
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1083 TCCGGAAAGTCAATGCATGAAGCGCGTATGCATTTTATGCATGTGAATACTTTGTCATCT 1142
Query 1048 TTGCCCAACTATATGTCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGTT 1107
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TTGCCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGTT 1202
Query 1108 GACATGACTGGAATTACCTTTGAGCAAATCGATGATATACACTGCCATGATCAAGATGAT 1167
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||
Sbjct 1203 GACATGACTGGGATTACCTTCGAGCAAATTGATGATATACACTGCCATGATCAAGATAAT 1262
Query 1168 AAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACATC 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 AAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACATC 1322
Query 1228 TCTGAGGACCTTGCTCGGATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGAAGT 1287
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 TCTGAGGACCTTGCTCGAATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGAAGT 1382
Query 1288 AACAATATTCAGAGTAAGAATTT-AAATTTTGAAGGACAGGGACCATGTGGCCAAGAGCC 1346
||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 1383 AACAATATTCAGAGTAAGA-TTCCAAATATTGAAGGACAGGGACCATGTGGCCAAGAGCC 1441
Query 1347 GCCTCTGCTGATCCAGTTTCGGATTTTTTATAATGGCTATGCTGTTAAGGGAACTTTTCT 1406
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1442 GCCTCTGCTGATCCAGTTTCGGATGTTTCATAATGGCTATGCTGTTAAGGGAACTTTTCT 1501
Query 1407 CACAAACAAGAAACTTCCTCCTCGGACTGTCCAGGTTCGACCTTCTATGATCAAGGTGTA 1466
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 1502 CACAAACAAGAAACTTCCTCCTTGGACTGTCCAGGTTCGGCCTTCTATGATCAAGGTGAA 1561
Query 1467 TGAAGATCGAACCTTGTCAAATCTTAGTACCTTTAACTCCTTGGAGGTAGTCACTACAAG 1526
|||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1562 TGAAGATCAAACCATGTCAAATTTTAGTACCTTTAACTCCCTGGAGGTAGTCACTACAAG 1621
Query 1527 TAATCCACCAAGAAAGGCGAGGCTATCAAGAAATTTGGTGGCGCTACTTAGTTATGGAGG 1586
||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 1622 TAATCCACCAAGAAATGCGAGGCTATCAAGAAATTTGGTCGCTCTGCTTAGTTATGGAGG 1681
Query 1587 AGTCCCTAATGACTTCTTTTTGAATATATTGCGCAACACGCTGGAAGAGTCCAAAACCAT 1646
|||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 1682 AGTCCCTAATGACTTCTTTTTGAATATACTGCGGAACACATTGGAAGAGTCCAAAACCAT 1741
Query 1647 ATTCTACAGTGAACGTGCTGCGTTTAAAG 1675
||||||||| |||||||||||||||||||
Sbjct 1742 ATTCTACAGCGAACGTGCTGCGTTTAAAG 1770
Score = 1101 bits (596), Expect = 0.0
Identities = 788/875 (90%), Gaps = 35/875 (4%)
Strand=Plus/Plus
Query 1 ATGATGAACAATGGCTGCGATGAAGTCTCTCCGCGGTCAGAGATCGCTCTTCTGGGTAGT 60
|||||||| | ||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 21 ATGATGAATTACGGCAGCGATGAAGTTTCTCCGCGGACAGAGATCGCTCTTCTGGGTAGT 80
Query 61 GTTGAAACAATGTTGGAGAAAATCTACGAGAAACACAATCATCGTCTTCCGATAAGTGTG 120
|||||||| ||||||||||||||||||||||||||||| || | || |||||||| |||
Sbjct 81 GTTGAAACCATGTTGGAGAAAATCTACGAGAAACACAAGCAGCATCGTCCGATAAAAGTG 140
Query 121 GAGACAAGGCGAAAACTTTCTTCGATTTCTGAGGAATTGGCTCTGGAAACACTTAGGAAA 180
||||||||||| | |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 141 GAGACAAGGCGGAGACTTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAA 200
Query 181 GTTTTCAATAAGCCGTATTTGAAGACCCTCGATGGGTTAATCATGTATTTTGTTAA-AGG 239
|||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 201 GTTTTCAACATGCCGTATGTGAAGACCCTCGATGGGATAATCATGTATTTTGTTAACAAT 260
Query 240 GACAGTCACTGTTGATGGCTCTCCACGCCTGAGTCCCGGCGAGTCTCCAGTACAGTCTCC 299
| | | |||||||||||| || || | || || | |||| | |||
Sbjct 261 G-CGGCCACTGTTGATGG--CT------CT---T-----CG-GT-T-CAGT---G--TCC 295
Query 300 TAGAACTCCTGCCaaaaaaaGTTGCAGGGC-TTCTCAAGATGTGTCTCTTGATTTGGAAA 358
||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||||||||
Sbjct 296 TAGAACTCCTGGGAAAAAAAGTTGCA-GGCTTTTTCAAGATGTGTCTATTGATTTGGAAA 354
Query 359 CTCCCTCTCCTAAGTTCATGAAAAGAGAAGAAAATGGTGG---ATCTAAGTACATTCCTC 415
|||| |||||||||||| ||| ||||||||||||||| || ||||||| |||||||||
Sbjct 355 CTCCATCTCCTAAGTTCTTGAGAAGAGAAGAAAATGGAGGATCATCTAAGCACATTCCTC 414
Query 416 CGCTTTTAGCT-TTGGGTGAACTTGAATTCAAGAAGGCGTTTCTGTTGCTTAGCTATATT 474
|||| |||||| || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 415 CGCTATTAGCTCTT-GGTGAACTTGAATTCAACAAGGCTTTTCTGTTGCTTAGCTATATT 473
Query 475 GGAGGGGAATCCCTTGTTGAGGAGGTTATATCTGGTGATCAGATCAGAAAATGGAAGGAT 534
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 GGAGGGGAATCCCTGGTTGAGGAGGTTATATCTGGTGATGAGATCAGAAAATGGAAGGAT 533
Query 535 TTGCCAATGGTTTCATATGAAGCAGCGGTTTGGAACCGGTTGGGACAGCGTTATTGTTCC 594
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 534 TTGCCAATGGTTGAATATGAAGCAGAGGTTTGGAACCGGTTGGGACAGCGTTATTG-TCC 592
Query 595 CCC-AAGGAGCGAAGAAGGCCACTTGAAGGGGATAGTGGGATGACCCATTACTATCAATG 653
||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||
Sbjct 593 CCCAAAGGAGCGAAGAAGGTCACTTGAAGGGGATAGTGGGAAGACTCATTACTATCAATG 652
Query 654 TCATGTTGCTACCGATGGTAGTTACAAATTCAAGGGTCATCTTCTGGAGAACACTGGAAC 713
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 653 TCATGTTGCTCCCGATGGTAGTTACAAATTCAAGGGTTATCTTCTGGAGGACACTGGAAC 712
Query 714 ACACCTGCACAAGGTTTTGGGTGATGATAACGTTCTAACTGTCAAATTTGATAAAGTGTT 773
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 713 ACACCTGCACAAGGTTTTGGGTGATGATAACGTTTTAACCGTCAAATTCGATAAAGTGTT 772
Query 774 AGGCGTGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAAGAATGG 833
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AGGCGAGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAAGAATGG 832
Query 834 TATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 868
|||||||||||||||||||||||||||||||||||
Sbjct 833 TATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 867
> Ahg319567 jgi|Araly1|319567|fgenesh1_pm.C_scaffold_3002583
Length=2682
Score = 1365 bits (739), Expect = 0.0
Identities = 1378/1671 (82%), Gaps = 106/1671 (6%)
Strand=Plus/Plus
Query 13 GGCTGCGATGAAGTCTCTCCGCGGTCAGAGATCGCTCTTCTGGGTAGTGTTGAAACAATG 72
||| |||||||||| | | |||||||||| |||| ||||||||||||||||||||| |||
Sbjct 16 GGCGGCGATGAAGTTTTTTCGCGGTCAGAAATCGTTCTTCTGGGTAGTGTTGAAACCATG 75
Query 73 TTGGAGAAAATCTACGAGAAACACAATCATCGTCTTCCGATAAGTGTGGAGACAAGGCGA 132
|||||||||||||||| |||||||||||||| || |||||||| ||||||||||| ||
Sbjct 76 TTGGAGAAAATCTACGGGAAACACAATCATCATCCTCCGATAAAAGTGGAGACAAGACGG 135
Query 133 AAACTTTCTTCGATTTCTGAGGAATTGGCTCTGGAAACACTTAGGAAAGTTTTCAATAAG 192
|||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
Sbjct 136 AAACTTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAAGTTCTCAATATG 195
Query 193 CCGTATTTGAAGACCCTCGATGGGTTAATCATGTATTTTGTTAA-AGGGACAGTCACTGT 251
|||| ||||||| ||||||||| ||||||||||||| ||||| | | | | ||||||
Sbjct 196 GAGTATGTGAAGACTCTCGATGGGATAATCATGTATTTCGTTAACAATG-CGGCCACTGT 254
Query 252 TGATGGCTCTCCACGCCTGAGTCCCGGCGAGTCTCCAG-TACAGTCTCCTAGAACTCCTG 310
||||||||||||||| |||||| |||| |||||||| | | |||||||||| ||||||||
Sbjct 255 TGATGGCTCTCCACGGCTGAGTTCCGGTGAGTCTCC-GCTTCAGTCTCCTACAACTCCTG 313
Query 311 CCaaaaaaaGTTGCAGGGCTTCTCAAGATGTGTCTCTTGATTTG-GAA-ACTCCCTCTCC 368
||||| | | || ||||||||||| | | ||| | ||| |||||
Sbjct 314 --GGAAAAA-----A--G-------AG--GTGTCTCTTGA-TGGTGAAGA-TCCGTCTCC 353
Query 369 TAAGTTCATGAAAAGAGAAGAAAATGGTGGATCTAAGT-ACATTCCTCCGCTTTTAGCTT 427
||||||| ||| |||||| |||| ||| || |||| | ||||||||||||| ||||||
Sbjct 354 TAAGTTCTTGAGAAGAGATGAAACTGGAAGAACTAA-TCACATTCCTCCGCTAGTAGCTT 412
Query 428 TGGGTGAACTTGAATTCAAGAAGGCGTTTCTGTTGCTTAGCTATATTGGAGGGGAATC-- 485
|||||||||||||||| |||||||||||||||||||||| |||| | ||||| | |||
Sbjct 413 TGGGTGAACTTGAATTTAAGAAGGCGTTTCTGTTGCTTACCTATCTCGGAGGTG-ATCGT 471
Query 486 CCTTGTT----G--A-------G-GAGGTTATATCTGGTGATCAGATCAGAAAATGGAAG 531
||||| | | | |||||||||||||||||| |||||||| ||||||||
Sbjct 472 TTTTGTTACAGGAAATCCCTGGGTGAGGTTATATCTGGTGATGAGATCAGACAATGGAAG 531
Query 532 GATTTGCCAATGGTTTCATATG-AAGCAGCGGTTTGGAACCGGTTGGGACAGCGTTATTG 590
||||||||||||||| |||||| ||| || | | | |||| || | |||
Sbjct 532 GATTTGCCAATGGTTGCATATGAAAG-TGCAG--T-G---TGGTT----CA-AG---TTG 576
Query 591 TTCCCCCAAGGAGCGAAGAAGGC-CACTTGAAGGGGATAGTGGGATGACCCATTACTATC 649
|| || |||| ||||| | | |||||| |||||| |||| ||| ||||||||||
Sbjct 577 -GGCCAAAACGAGCAAAGAA-TCTCGCTTGAATCGGATAGCGGGAAGACTCATTACTATC 634
Query 650 AATGTCATGTTGCTACCGATGGTAGTTACAAATTCAAGGGTCATCTTCTGGAGAACACTG 709
||||||||||| || ||||||||||||||| ||| |||||| |||| |||||||||||||
Sbjct 635 AATGTCATGTTACTCCCGATGGTAGTTACAGATTTAAGGGTTATCTACTGGAGAACACTG 694
Query 710 GAACACACCTGCACAAGGTTTTGGGTGATGATAACGTTCTAACTGTCAAATTTGATAAAG 769
|||||||||||||||||||||||||||||||||| ||| | || |||||||||||| ||
Sbjct 695 GAACACACCTGCACAAGGTTTTGGGTGATGATAATGTTTTGACCGTCAAATTTGATCAAT 754
Query 770 T--GTTAGGCGTGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAA 827
| ||| || |||||| ||||| |||| |||||||| | ||||||||||||||||
Sbjct 755 TACCAAAGGAGT--CAACCTACTGTAACGACCCTTACTCTAAACACAAAGGGATTGCTAA 812
Query 828 GAATGGTATCATGGTTGGGTTACGCCGTTATCGATTTTTTGTTTTCAAAGATGGAGGGAA 887
|||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||
Sbjct 813 GAATGGTATCATGGTTGGTTTACGTCGTTATCAAATTTTTGTTTTCAAAGATGGAGGGAA 872
Query 888 AGAAGAGAAGAAGAA-AGATGTTTCTACAAAGGGAGTTAAATGCTACTTTATACGCACAG 946
|| |||||| ||||| ||| || |||||||| ||| ||||| ||||||||||||| |
Sbjct 873 AGCAGAGAAAAAGAAGAGAAATT-CTACAAAGCAAGTGAAATGTTACTTTATACGCATGG 931
Query 947 ACTCGACAGCTTCAATTGATATGCAAAATCCCTATATC-TTCGCCGGAAAGTCAATGCAT 1005
|||| ||||| || | ||||||| |||||||||||||| || ||||| | ||| || |||
Sbjct 932 ACTCTACAGCGTCTAGTGATATGGAAAATCCCTATATCCTT-GCCGGGATGTCTATTCAT 990
Query 1006 GAAGCACGTATGCATTTTATGCATGTGAATACTTTGTCATCTTTGCCCAACTATATGTCA 1065
||||| || |||||||||||||||||| |||| ||| | ||| | ||||||||||| ||
Sbjct 991 GAAGCTCGGATGCATTTTATGCATGTGCATACATTGCCTTCTCCGGCCAACTATATGGCA 1050
Query 1066 AGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGTTGACATGACTGGAATTACC 1125
||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||
Sbjct 1051 CGGTTTTCTTTAATTCTGTCAAAGACAAAAAAGCTTGAAGTTGACATGACTGGGATTACC 1110
Query 1126 TTTGAGCAAATCGATGATATACACTGCCATGATCAA-GATGATAAGGATGTTCTTGACAA 1184
| |||||||||||||||||||||||||||||||| | | |||| ||||||||||| ||
Sbjct 1111 GTCAAGCAAATCGATGATATACACTGCCATGATCAAAG-TAATAATGATGTTCTTGATAA 1169
Query 1185 GAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTTGCTCG 1244
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1170 GAATGGGAAACCTCGTATACACTCAGATGGAACTGGATACATCTCTGAGGACCTTGCTCG 1229
Query 1245 GATGTGTCCAGTTAATATTTTTAAAGGGAAAT-CTATGAGAAGTAACAATATTCAGAGTA 1303
|||||||||||| ||||||| |||||||||| | || | |||| ||| ||||||| |
Sbjct 1230 GATGTGTCCAGTAAATATTTATAAAGGGAAAAAC-ATCAAAAGTGACATTATTCAG-G-- 1285
Query 1304 AGAATTTAAATTTTGAAGGACAGGGACCATGTGGCCAAGAGCCGCCTCTGCTGATCCAGT 1363
||| ||| | | |||||||||||||||||||||||||||||
Sbjct 1286 -GAA---AAA----------C-----C--TGTGGCCAAGAGCCGCCTCTGCTGATCCAAA 1324
Query 1364 TTCGGATTTTTTATAATGGCTATGCTGTTAAGGGAACTTTTCTCAC-AAACAAGAAACTT 1422
||||||| ||| || |||||| |||||||||||||| |||||| | ||||||||| |||
Sbjct 1325 TTCGGATGTTTAATGATGGCTCTGCTGTTAAGGGAATTTTTCT-ATTAAACAAGAACCTT 1383
Query 1423 CCTCCTCGGACTGTCCAGGTTCGACCTTCTATGATCAAGGTGTATGAAGATCGAACCTTG 1482
||||| ||||| ||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1384 CCTCCACGGACCGTCCAGGTTCGACCTTCTATGATCAAGGTGTATAAAGATAAAAATTTG 1443
Query 1483 TCAAATCTTAGTACCTTTAACTCCTTGGAGGTAGTCACTACAAGTAATCCACCAAGAAAG 1542
|||||| |||| || ||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1444 TCAAATTTTAGCACTTTTAACTCCCTGGAGGTAGTCACTACAAGTAATCCACCAA-AAAG 1502
Query 1543 -GCGAGGCTATC-AAGAAATTTGGTGGCGCTACTTAGTTATGGAGGAGTCCCTAATGACT 1600
|||| |||||| ||||| |||||| ||||| || || ||||||||||| || ||||| |
Sbjct 1503 AGCGAAGCTATCGAAGAA-TTTGGTCGCGCTGCTGAGCTATGGAGGAGTGCCAAATGATT 1561
Query 1601 TCTTTTTGAATATATTGCGCAACACGCTGGAAGAGTCCAAAACCATATTCT 1651
| |||||| ||||||||| ||||||| ||||| || || ||| ||||||
Sbjct 1562 TTTTTTTGGATATATTGCTCAACACGTTGGAAAAGAAGAATACCGTATTCT 1612
Score = 139 bits (75), Expect = 1e-31
Identities = 144/176 (82%), Gaps = 10/176 (6%)
Strand=Plus/Plus
Query 2400 TGCTCTTGATGCACCAAAAAAGGGGGCTAAGGTTGATCTCCCGCCCGATC-TAGAGATCA 2458
|||| ||||||||||||||| |||| || |||| |||||||| ||| | || || |
Sbjct 2322 TGCTATTGATGCACCAAAAACGGGGACTGAGGTCAATCTCCCGTTCGA-CGTAAAGGCCG 2380
Query 2459 AAAATTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCCACTTCTATTC 2518
| |||||||||||| |||||| | || ||| | | | |||| ||||| ||||||||
Sbjct 2381 ATGTTTTTCCACATTATATGGAGAG-GA--ATAA-A-ATA-TTCAAGTCCATTTCTATTC 2434
Query 2519 TTGGATTAATCTTTGACACTGTGGATTCTCATAATGCAGAGGAACCCC-CACCATC 2573
|||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 2435 TTGGTTTAATCTTTGACACTGTGGATTCTCATAATGCAGAGGA-CCCCACACCATC 2489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112480493485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5