BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19930.1
Length=3127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480480 jgi|Araly1|480480|fgenesh2_kg.3__3181__AT2G19930.1 4678 0.0
Ahg319567 jgi|Araly1|319567|fgenesh1_pm.C_scaffold_3002583 835 0.0
Ahg931400 jgi|Araly1|931400|scaffold_303857.1 466 4e-130
> Ahg480480 jgi|Araly1|480480|fgenesh2_kg.3__3181__AT2G19930.1
Length=3107
Score = 4678 bits (2533), Expect = 0.0
Identities = 2914/3092 (94%), Gaps = 49/3092 (2%)
Strand=Plus/Plus
Query 10 GCTTCTTCGAGGAT-AAGGATCGCTCTTTCGGGTCGGATTGAAACAGCTTTAGAGAATAT 68
|||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 GCTTCTACGAGG-TCAAGGATCGCTCTTTCGGGTCGGATTGAAACAGCTTTAGAGAATAT 80
Query 69 CTACAGAAAACACAATCTTACTCCGATTAATGATGAGACGAGACAGAGACTGTCTTCGAT 128
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 81 CTACAGAAAATTTAATCTTACTCCGATTAATGATGAGACGAGACAGAGACTGTCTTCCAT 140
Query 129 TCCTGAGAATTTGGGTTTTGAGTTGGTCAGGAAAGTTTTTAGTTTGCAGGCTGGTTTGAT 188
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 141 TCCTGAGAATTTGGGTTTTGAGTTGGTCAGGAACGTTTTTAGTTTGCAGGCTGGTTTGAT 200
Query 189 ATACAACCTCGACAGCTTCATCGTTTCTAAGGTTAACCAAGCCGTTAGTTTTACTGGCTA 248
|||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 201 ATACAATCTCGACAGCTTCATCGTTTCTAAAGTTAACCAATCCGTTAATTTTACTGGCTA 260
Query 249 T---C--C--A---CA-----G---CCGGCGAACTCTCTTAGCCCCTCTGGAAGACACGT 290
| | | | || | ||||||||||||| ||| |||||||||||||||||
Sbjct 261 TCCACGGCTGAGCTCAGGTGTGTCTCCGGCGAACTCTCGTAGTCCCTCTGGAAGACACGT 320
Query 291 GTCCAGGGTTCTTCAAGAAGAGATGTCTGTTGATTCTGATGCTCCTTCTCCTAAGTCTTT 350
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GTGCAGGGTTCTTCAAGAAGAGATGTCTGTTGATTCTGATGCTCCTTCTCCTAAGTCTTT 380
Query 351 GAAAAGTGAAGACAAA-GGAGGATCTCTGCACATTCCCCAGCTGGTAGCTTTGGGTGAAC 409
|||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 381 GAAAAGTGAAGA-AAATGGAGGATCTCTGCACATTCCACAGCTGGTAGCTTTGGGTGAAC 439
Query 410 TTGAATTTAAGAAGGTGTTTTTGTTACTTAGCTATATTCCAGGGCAACATGTGGGCCAGG 469
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 440 TTGAATTTAAGAAGGCGTTTTTGTTACTTAGCTATATTCCAGGGCAACAACTGGGCCAGG 499
Query 470 TTATAACTGCTGATGAGATTAGACTGTGGAAAGATTTGCCAATGGTTGAATATGAAGCAG 529
||| |||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 500 TTACAACTGCTGATGAGATTCGACTATGGAAAGATTTGCCAATGGTTGCATATGAAGCAG 559
Query 530 CGGTTTGGGACCGCTTGGGCCGGCATTATTGTCCCCA-AAAGGACCGAAGAATGTTGCAA 588
| ||||||||||| |||||||||||||||||||| || | | ||||||||| ||||||||
Sbjct 560 CCGTTTGGGACCGTTTGGGCCGGCATTATTGTCCTCAGACA-GACCGAAGAGTGTTGCAA 618
Query 589 TGGGATAGCGGGAAGACCCATTACTATCAGTGTAATGTTGCTCCCAATGGTAGCTACACA 648
|||||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 619 TGGGATAGTGGCAAGACCCATTACTATCAGTGTCATGTTGCTCCCGATGGTAGCTACACA 678
Query 649 TTCAAGGTTCTTTCAGCTCTTCAAGGCCCTCTTCTTGAACACACTGGAACACACTTGCAC 708
||||||| | | ||| ||||||||||||||||||||||||||||||
Sbjct 679 TTCAAGG--------G-----C----CCC-CTTCTTGAACACACTGGAACACACTTGCAC 720
Query 709 AAGGTCTTGGGTGATGATAATGTTTTAACCGTCAAATTCGCGGATGTCCAGAAAAGTTCA 768
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 721 AAGGTCTTGGGTGATGAAAATGTTTTAACTGTCAAATTCGCGGATGTCCCGAAAAACTCA 780
Query 769 TCAACATATAGCATTGACCATTACTTTACATACAAAGGGATTGCCAAGAACGGTATCATG 828
||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct 781 TCAACATATAGCAATGACCGTTATTTTACATACAAAGAAATTGCCAAGAACGGTATCATG 840
Query 829 ATTGGTTTACGTCGTTATCAATTTTTTGTTTTCAAAGATGGAGGAAAAGAGGAAAAGAAG 888
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATTGGTTTACGTCGTTATCAGTTTTTTGTTTTCAAAGATGGAGGAAAAGAGGAAAAGAAG 900
Query 889 AAAGATCTTTCTACAAAGAAAGTGAAATGCTACTTTATACGCACGGACTCAACAGCTTTT 948
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 901 AAAGATCTTTCTACAAAGAAAGTGAAATGCTACTTTATACGCACGGGCTCTACAGCTTCT 960
Query 949 TATGATATGCAAAATCCCTATATTTTAACCGGAAAGTCAATTTATGAAGCTCGTATGCAT 1008
| ||||||| |||||||||||||||| || |||||||||||| | |||||||||||||||
Sbjct 961 TGTGATATGGAAAATCCCTATATTTTTACTGGAAAGTCAATTCACGAAGCTCGTATGCAT 1020
Query 1009 TTTATGCACGTGCATCGAGCACCAACTTTGGCGAATTATATGGCAAGGTTTTCCTTAATT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTTATGCACGTGCATCGAGCACCAACTTTGGCGAATTATATGGCAAGGTTTTCCTTAATT 1080
Query 1069 CTGTCAAAGACTAAAACGCTTGAAGTTGACATGACTGGGATTACCTTTGATCAAATTGAT 1128
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1081 CTCTCAAAGACTAAAACGCTTGAAGTTGACATGACTGGGATTACCTTTGATCCAATTGAT 1140
Query 1129 GATATACACTGCCATGATCAAGATGGGAAAGATGTTCTTGACAAGAACAAAAAACCTTGC 1188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GATATACACTGCCATGATCAAGATGGGAAAGATGTTCTTGACAAGAACAAAAAACCTTGT 1200
Query 1189 ATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTGGCTCGGATGTGTCCCCTAAAT 1248
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 ATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTTGCTCGGATGTGTCCCCTAAAT 1260
Query 1249 ATATTTAAAGGGAAATGTCTCAGAAGTGAAAGTATTCAGGAAGCATGTTACCAAGACCCG 1308
||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct 1261 ATATTTAAAGGGAAATGTCTCAGAAGTGAAAATATTCAGGAAGCTTGTAACCAAGACCCG 1320
Query 1309 CCTCTTTTGATCCAGTTTCGGATGTTTTATGATGGTTATGCTGTTAAGGGAACTTTTCTC 1368
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1321 CCTCTTTTGATCCAGTTTCGGATGTTTTATGATGGCTATGCTGTTAAGGGAACTTTTCTC 1380
Query 1369 TTAAACAAGAAACTTTGTCCTCGGACTGTCCAGGTTCGACCTTCGATGATCAAGGTGTCT 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTAAACAAGAAACTTTGTCCTCGGACTGTCCAGGTTCGACCTTCGATGATCAAGGTGTCT 1440
Query 1429 AAAGATCCATCCTTGTCCAATTTTAGCACCTTTAACGCCTTGGAAGTAGTAACCACAAGT 1488
|||||||| || ||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 1441 AAAGATCCCTCATTGTCAAATTTTAGCACCTTTAACGCTTTGGAGGTAGTAACTACAAGT 1500
Query 1489 AATCCACCAAAAAGAACAAAGCTATCAAAAAATTTGGTTGCGCTGCTTAGCTATGGAGGA 1548
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AATCCACCAAGAAGAACAAAGCTATCAAAAAATTTGGTTGCGCTGCTTAGCTATGGAGGA 1560
Query 1549 ATCCCTAATGAATTCTTTTTGGATATATTGCTCAACACGTTGGAAGAGTCTAAAAGCATA 1608
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1561 ATCCCTAATGAATTCTTTTTGGATATATTGCTCAACACGCTGGAAGAGTCTAAAAGCATA 1620
Query 1609 TTCTACAACAAACGTGCTGCACTTAATGCTGCTCTTAATTATGGGGAAATGGACGACCAG 1668
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1621 TTCTACAACAAACATGCTGCGCTTAATGTTGCTCTTAATTATGGGGAAATGGACGACCAG 1680
Query 1669 AACGCCGCACAGATGATATTGGTTGGTATCCCCCTTGATGAACCACACTTGAAGAATTAT 1728
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1681 AACGCCGCACAGATGATATTGGTTGGTATCCCCCTTGACGAACCACACTTGAAGAATCAT 1740
Query 1729 CTGTCTATACTTTTAAAGACAGAGAAAAATGATCTCAAAGCAGGAAAACTTCCTGTGACC 1788
|||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1741 CTGTCTATTCTTCTAAAGACAGAGAAAAATGATCTCAAAGCAGGAAGACTTCCTGTGACC 1800
Query 1789 GAATCATACTATCTTATGGGAACAGTGGATCCCACCGGAGCGCTAAAGGAAGATGAAGTC 1848
|||||||||||||| ||||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 1801 GAATCATACTATCTCATGGGGACAGTGGATCCCACTGGAGAGCTAAAGGAAGATGAAGTC 1860
Query 1849 TGTGTAATTCTTGAGTCTGGGCAAATTTCGGGAGAAGTTTTAGTGTATAGAAATCCTGGA 1908
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1861 TGTGTAATCCTTGAGTCTGGGCAAATTTCGGGAGAAGTGTTAGTTTATAGAAATCCTGGA 1920
Query 1909 TTACATTTTGGAGACATACATATTCTTAAGGCCACATATGTCAAGGCCTTGGAAGAGTAT 1968
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 1921 TTACATTTTGGAGACATACATATTCTCAAGGCTACATATGTTAAGGCCTTGGAAGAGTAT 1980
Query 1969 GTTGGAAATTCCAAGTTTGCTGTGTTCTTCCCTCAGAAAGGTCCAAGATCCTTGGGGGAC 2028
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1981 GTTGGAAATTCCAAGTATGCTGTGTTCTTCCCTCAGAAAGGTCCAAGATCCTTGGGCGAC 2040
Query 2029 GAGATTGCAGGTGGTGACTTTGATGGTGATATGTATTTCATATCAAGAAACCCTGAGCTA 2088
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 GAGATTGCAGGTGGTGACTTTGATGGTGATATGTATTTCATATCAAGAAACCCTGAGCTG 2100
Query 2089 CTTGAAAACTTCAAACCAAGTGAACCGTGGGTGAGTTTGACTCCTCCCAGTAAAAGTAAC 2148
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 CTTGAACACTTCAAACCAAGTGAACCGTGGGTGAGTTTGACTCCTCCCAGTAAAAGTAAC 2160
Query 2149 TCTGGTAGAGCGCCAAGCCAGCTTTCCCCAGAAGAGTTGGAAGAAGAACTTTTCGAAATG 2208
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2161 TCTGGTAGAGCGCCAAGCCAGCTTTCACCAGAAGAGTTGGAAGAAGAACTTTTCGAAATG 2220
Query 2209 TTCCTGACTGCAGGATTTCATGCCAGCAATGTTATAGGGATAGCTGCAGATAGCTGGTTA 2268
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TTCCTGAAGGCAGGATTTCATGCCAGCAATGTTATAGGGATAGCTGCAGATAGCTGGTTA 2280
Query 2269 ACAATAATGGACCGCTTCCTCATACTAGGAGATGACAGGGCTGAGGAAAAAGCTGAAATG 2328
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 2281 ACAATAATGGACCGCTTCCTAATACTAGGAGATGAGAGAGCTGAGGAAAAAGCTGAAATG 2340
Query 2329 AAGAAGAAGATGCTTGAGCTGATTGATATATACTATGATGCTCTTGATGCACCAAAGAAA 2388
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2341 AAGAAGAAAATGCTAAAGCTGATTGATATATACTATGATGCTCTTGATGCACCAAAGAAA 2400
Query 2389 GGGGATAAAGTCTACCTCCCAAACAAGCTGAAGCCTGACATCTTTCCACATTACATGGAG 2448
|||||||| ||||| || |||||| |||||| ||| ||||||||||||||||||||||||
Sbjct 2401 GGGGATAAGGTCTATCTTCCAAACGAGCTGAGGCCCGACATCTTTCCACATTACATGGAG 2460
Query 2449 CGGGATAAAAAATTCCAGTCCACTTCTATTCTTGGATTAATCTTTGACTTTGTTAAATCA 2508
||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2461 CGGGAGAAAAAGTTCAAGTCCACTTCTATTCTTGGATTAATCTATGACTTTGTTAAATCA 2520
Query 2509 CAGACAACAGAGGAACCCTCACCATCATCTGAGATCAGTAAACTCCCGTGTTTCGAAGAT 2568
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 2521 CAGACAACAGAGGAACCCACACCATCATCTGAGATCAGTAAACTCCCCTGTTTCGAAGAT 2580
Query 2569 GAGCCGGTCTCCGAGTTTCATATGCAGAAATGTAGACTGTGGTATGATAATTACAGAACT 2628
||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 2581 GAGCCGGTCTCAGAGTTTCATATGGAGAAATGTAGACGGTGGTATGATAATTACAGAACT 2640
Query 2629 GAGATGACACAGGCGATGAAGACTGATAAGGATGAATCAGCCAATGAAGTTATTCAGAGA 2688
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2641 GAGATGACCCAGGCGATGAAAACTGATAAGGATGAATCAGCCAATGAAGTTATTCAGAGA 2700
Query 2689 TACAAGCAGGAGTTCTATGGCGCTGCAGGGTTTGAAGACAGCAAGAAAAGTCTGGAAGAA 2748
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2701 TACAAGCAGGAGTTCTATGGTGCTGCAGGGTTTGAAGACAGCAAGAAAAGTCTGGAAGAA 2760
Query 2749 CTCTATCCGCAAGCTCTCGCACTCTACAAGATCGTTTACGATTATGCCATTCATGCAGGT 2808
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2761 CTCTATCCGCAAGCCCTCGCACTGTACAAGATCGTTTACGATTATGCCATTCATGCAGGT 2820
Query 2809 GTTTCGAAATGCAGGTTTGTCTGGAAGGTAGCAGGACCGGTACTGTGCAGATTCTATCTA 2868
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2821 GTTTCGAAATGTGGGTTTGTCTGGAAGGTAGCAGGACCGGTACTGTGCAGATTCTATCTA 2880
Query 2869 AAT-AAGAAAATGCAGGAGAAATGTTTAGTGTGTGCACCATCTGTGCTTAAAGAGCTTTG 2927
| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2881 A-TGAAGAAAATGCAGGAGAAATCTTTAGTGTGTGCACCATCTGTGCTTAAAGAGCTTTG 2939
Query 2928 GGGTTGAAGAATACAAGCCTTTGTTGTTGCTACA-TGTCTAATAATAAGAAGCGTATGAG 2986
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct 2940 GGGTTGAAGAATACAAGCCTTTGTTGTTGCTTCAGTGTCTAATAA---GAAGCGTATGAG 2996
Query 2987 GCAAGTAAGTTAACTAATAGGTGCCAAGATGTGTGTGTTGTAGTGCCTTTTGGTTTGGTT 3046
|||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct 2997 GCAAGTAACTTAACTAATAGAAGCCAAGATGTGTGTATTGTAGTGCCTTT-GGTTTGGTT 3055
Query 3047 TTAATGTAGATTTCTCCTCTGGTGAATATTTT 3078
||||||||||||| | |||| ||||||||||
Sbjct 3056 TTAATGTAGATTTGTTCTCTAATGAATATTTT 3087
> Ahg319567 jgi|Araly1|319567|fgenesh1_pm.C_scaffold_3002583
Length=2682
Score = 835 bits (452), Expect = 0.0
Identities = 1055/1331 (79%), Gaps = 102/1331 (8%)
Strand=Plus/Plus
Query 308 AAGAGATGTCTGTTGATTCTGATGCTCCTTCTCCTAAG-TCTTTGAAAAGTGAAGACAA- 365
||||| ||||| ||||| ||| | ||| ||||||||| || |||| ||| || || ||
Sbjct 320 AAGAGGTGTCTCTTGATGGTGAAGATCCGTCTCCTAAGTTC-TTGAGAAGAGATGA-AAC 377
Query 366 AGGAGGATCT-CTGCACATTCC-CCAGCTGGTAGCTTTGGGTGAACTTGAATTTAAGAAG 423
||| || || | |||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 378 TGGAAGAACTAAT-CACATTCCTCC-GCTAGTAGCTTTGGGTGAACTTGAATTTAAGAAG 435
Query 424 GTG-TT-T-TTG-TTA-C--T-T---AGCT-AT-ATTCCAG-GGCA--ACAT--GTGGGC 465
| | || | ||| ||| | | | || | || || | || | || ||||
Sbjct 436 GCGTTTCTGTTGCTTACCTATCTCGGAGGTGATCGTTTTTGTTACAGGAAATCCCTGGGT 495
Query 466 CAGGTTATAACTGCTGATGAGATTAGACTGTGGAAAGATTTGCCAATGGTTGAATATG-A 524
|||||||| ||| ||||||||| |||| ||||| |||||||||||||||| ||||| |
Sbjct 496 GAGGTTATATCTGGTGATGAGATCAGACAATGGAAGGATTTGCCAATGGTTGCATATGAA 555
Query 525 AGCAGCGGTTTGGGACCGCTTGGGCCGGCATTA-TTGTCCCCAAAAGGACCGAAGAA--T 581
|| || | || | | || || | ||| |||||| || | ||||| |
Sbjct 556 AG-TGCAG--TGTG---G-TT-------CA--AGTTG-GGCCAAAACGAGCAAAGAATCT 598
Query 582 -G-TTGCAATGGGATAGCGGGAAGACCCATTACTATCAGTGTAATGTTGCTCCCAATGGT 639
| ||| ||| ||||||||||||||| ||||||||||| ||| ||||| ||||| |||||
Sbjct 599 CGCTTG-AATCGGATAGCGGGAAGACTCATTACTATCAATGTCATGTTACTCCCGATGGT 657
Query 640 AGCTACACATTCAAGGTTCTTTCAGCTCTTCAAGGCCCTCTTCTTGA-ACACACTGGAAC 698
|| |||| ||| |||| | || | ||| || || | ||||||||||
Sbjct 658 AGTTACAGATTTAAGG--------G---TT--A-----TCTACTGGAGA-ACACTGGAAC 698
Query 699 ACACTTGCACAAGGTCTTGGGTGATGATAATGTTTTAACCGTCAAATTCG--CGGATGTC 756
|||| |||||||||| |||||||||||||||||||| ||||||||||| | | || |
Sbjct 699 ACACCTGCACAAGGTTTTGGGTGATGATAATGTTTTGACCGTCAAATTTGATC-AAT-T- 755
Query 757 CAGAAAAGTTCA-TCAACATA-TAGCATTGACCATTACTTTACATACAAAGGGATTGCCA 814
| |||| | ||||| || | | | |||| ||||| || | ||||||||||||| |
Sbjct 756 -ACCAAAG--GAGTCAACCTACT-GTAACGACCCTTACTCTAAACACAAAGGGATTGCTA 811
Query 815 AGAACGGTATCATGATTGGTTTACGTCGTTATCAATTTTTTGTTTTCAAAGATGGA-GGA 873
|||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 812 AGAATGGTATCATGGTTGGTTTACGTCGTTATCAAATTTTTGTTTTCAAAGATGGAGGGA 871
Query 874 AA--AGAGGAAAAGAAGAAAGATCTTTCTACAAAGAAAGTGAAATGCTACTTTATACGCA 931
|| |||| |||||||| ||| |||||||||| |||||||||| |||||||||||||
Sbjct 872 AAGCAGAGAAAAAGAAG--AGA-AATTCTACAAAGCAAGTGAAATGTTACTTTATACGCA 928
Query 932 CGGACTCAACAGCTTTTTA-TGATATGCAAAATCCCTATAT-TTTAACCGGAAAGTCAAT 989
|||||| ||||| | || ||||||| ||||||||||||| || |||| | ||| ||
Sbjct 929 TGGACTCTACAGC-GTCTAGTGATATGGAAAATCCCTATATCCTT-GCCGGGATGTCTAT 986
Query 990 TTATGAAGCTCGTATGCATTTTATGCACGTGCAT-CGAGCACCAACTTTGGCGAATTATA 1048
| |||||||||| |||||||||||||| |||||| | | || || ||| || ||||
Sbjct 987 TCATGAAGCTCGGATGCATTTTATGCATGTGCATAC-ATTGCCTTCTCCGGCCAACTATA 1045
Query 1049 TGGCAAGGTTTTCCTTAATTCTGTCAAAGACTAAAACGCTTGAAGTTGACATGACTGGGA 1108
||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1046 TGGCACGGTTTTCTTTAATTCTGTCAAAGACAAAAAAGCTTGAAGTTGACATGACTGGGA 1105
Query 1109 TTACCTTTGATCAAATTGATGATATACACTGCCATGATC-AAGATGGGAAAGATGTTCTT 1167
||||| | | ||||| |||||||||||||||||||||| ||| | || |||||||||
Sbjct 1106 TTACCGTCAAGCAAATCGATGATATACACTGCCATGATCAAAG-TAATAATGATGTTCTT 1164
Query 1168 GACAAGAACAAAAAACCTTGCATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTG 1227
|| ||||| |||||| | ||||| |||||||||||||| |||||||||||||||||
Sbjct 1165 GATAAGAATGGGAAACCTCGTATACACTCAGATGGAACTGGATACATCTCTGAGGACCTT 1224
Query 1228 GCTCGGATGTGTCCCCTAAATATATT-TAAAGGGAAATGTC-TCAGAAGTGAAAGTATTC 1285
|||||||||||||| ||||||| || |||||||||| | ||| |||||| | |||||
Sbjct 1225 GCTCGGATGTGTCCAGTAAATAT-TTATAAAGGGAAA-AACATCAAAAGTGACATTATTC 1282
Query 1286 A-GG--AAGCATGTTACCAAGACCCGCCTCTTTTGATCCAGTTTCGGATGTTTTATGATG 1342
| || || | ||| |||||| |||||||| ||||||| ||||||||||| ||||||
Sbjct 1283 AGGGAAAAACCTGTGGCCAAGAGCCGCCTCTGCTGATCCAAATTCGGATGTTTAATGATG 1342
Query 1343 GTTATGCTGTTAAGGGAACTTTTCTCTTAAACAAGAAACTTTGTCCTCGGACTGTCCAGG 1402
| | |||||||||||||| |||||| ||||||||||| ||| ||| ||||| |||||||
Sbjct 1343 GCTCTGCTGTTAAGGGAATTTTTCTATTAAACAAGAACCTTCCTCCACGGACCGTCCAGG 1402
Query 1403 TTCGACCTTCGATGATCAAGGTGTCTAAAGATCCATCCTTGTCCAATTTTAGCACCTTTA 1462
|||||||||| ||||||||||||| ||||||| | ||||| ||||||||||| ||||
Sbjct 1403 TTCGACCTTCTATGATCAAGGTGTATAAAGATAAAAATTTGTCAAATTTTAGCACTTTTA 1462
Query 1463 ACGCCTTGGAAGTAGTAACCACAAGTAATCCACCAAAAAGAACAAAGCTATCAAAAAATT 1522
|| || |||| ||||| || ||||||||||||||||||||| | |||||||| || ||||
Sbjct 1463 ACTCCCTGGAGGTAGTCACTACAAGTAATCCACCAAAAAGAGCGAAGCTATCGAAGAATT 1522
Query 1523 TGGTTGCGCTGCTTAGCTATGGAGGAATCCCTAATGAATTCTTTTTGGATATATTGCTCA 1582
|||| |||||||| |||||||||||| | || ||||| || |||||||||||||||||||
Sbjct 1523 TGGTCGCGCTGCTGAGCTATGGAGGAGTGCCAAATGATTTTTTTTTGGATATATTGCTCA 1582
Query 1583 ACACGTTGGAA 1593
|||||||||||
Sbjct 1583 ACACGTTGGAA 1593
> Ahg931400 jgi|Araly1|931400|scaffold_303857.1
Length=2845
Score = 466 bits (252), Expect = 4e-130
Identities = 375/435 (86%), Gaps = 6/435 (1%)
Strand=Plus/Plus
Query 856 GTTTTCAAAGATGGAGGAAAAGAGGAAAAGAAGAAAGATC-TTTCTACAAAGAAAGTGAA 914
||||||||||||||||| ||||| || ||||||||||| | | |||||||| ||||||
Sbjct 963 GTTTTCAAAGATGGAGGGAAAGAAGAGAAGAAGAAAGA-CGCTGCTACAAAGGGAGTGAA 1021
Query 915 ATGCTACTTTATACGCACGGACTCAACAGCTTTTTATGATATGCAAAATCCCTATATTTT 974
|||||||||||||||||| ||||| ||||||| ||||||||| ||| |||||||| ||
Sbjct 1022 ATGCTACTTTATACGCACAGACTCGACAGCTTCAAATGATATGCGAAACCCCTATATCTT 1081
Query 975 AACCGGAAAGTCAATTTATGAAGCTCGTATGCATTTTATGCACGTGCAT-CGAGCACCAA 1033
||||||||||||| ||||||| ||||||||||||||||| ||| || | ||
Sbjct 1082 CTCCGGAAAGTCAATGCATGAAGCGCGTATGCATTTTATGCATGTGAATAC-TTTGTCAT 1140
Query 1034 CTTTGGCGAATTATATGGCAAGGTTTTCCTTAATTCTGTCAAAGACTAAAACGCTTGAAG 1093
||||| | || ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1141 CTTTGCCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAG 1200
Query 1094 TTGACATGACTGGGATTACCTTTGATCAAATTGATGATATACACTGCCATGATCAAGATG 1153
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1201 TTGACATGACTGGGATTACCTTCGAGCAAATTGATGATATACACTGCCATGATCAAGATA 1260
Query 1154 GGAAAGATGTTCTTGACAAGAACAAAAAACCTTGCATACATTCAGATGGAACTGGCTACA 1213
|| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1261 ATAAGGATGTTCTTGACAAGAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACA 1320
Query 1214 TCTCTGAGGACCTGGCTCGGATGTGTCCCCTAAATATATTTAAAGGGAAATGTCTCAGAA 1273
||||||||||||| ||||| |||||||| | ||||| ||||||||||||| | | ||||
Sbjct 1321 TCTCTGAGGACCTTGCTCGAATGTGTCCAGTTAATATTTTTAAAGGGAAATCTATGAGAA 1380
Query 1274 GTGA-AAGTATTCAG 1287
|| | || |||||||
Sbjct 1381 GTAACAA-TATTCAG 1394
Score = 339 bits (183), Expect = 1e-91
Identities = 459/583 (79%), Gaps = 55/583 (9%)
Strand=Plus/Plus
Query 294 CAGGGTTCTTCAAGAAGAGATGTCTGTTGATTCT-GATGCTCCTTCTCCTAAG-TCTTTG 351
|||| || |||||| | | ||||| |||||| | || |||| ||||||||| || |||
Sbjct 320 CAGGCTTTTTCAAG-A-TG-TGTCTATTGATT-TGGAAACTCCATCTCCTAAGTTC-TTG 374
Query 352 AAAAGTGAAGACAAA-GGAGGATC-TCT--GCACATTCC-CCAGCTGGTAGCT-TTGGGT 405
| ||| ||||| ||| |||||||| ||| ||||||||| || ||| ||||| || |||
Sbjct 375 AGAAGAGAAGA-AAATGGAGGATCATCTAAGCACATTCCTCC-GCTATTAGCTCTT-GGT 431
Query 406 GAACTTGAATTTAAGAAGGTGTTTT-TGTTACTTAGCTATATTCCAGGGCAA--CAT-G- 460
||||||||||| || |||| |||| |||| |||||||||||| |||| || | | |
Sbjct 432 GAACTTGAATTCAACAAGG-CTTTTCTGTTGCTTAGCTATATTGGAGGGGAATCCCTGGT 490
Query 461 TG-GGCCAGGTTATAACTGCTGATGAGATTAGACTGTGGAAAGATTTGCCAATGGTTGAA 519
|| || |||||||| ||| ||||||||| ||| ||||| ||||||||||||||||||
Sbjct 491 TGAGG--AGGTTATATCTGGTGATGAGATCAGAAAATGGAAGGATTTGCCAATGGTTGAA 548
Query 520 TATGAAGCAGCGGTTTGGGACCGCTTGGGCCGGCATTATTGTCCCCAAAAGGACCGAAGA 579
|||||||||| ||||||| |||| ||||| | || ||||||||||| |||||| ||||||
Sbjct 549 TATGAAGCAGAGGTTTGGAACCGGTTGGGACAGCGTTATTGTCCCCCAAAGGAGCGAAGA 608
Query 580 ATGT---T-GCAATGGGATAGCGGGAAGACCCATTACTATCAGTGTAATGTTGCTCCCAA 635
| || | | || ||||||| |||||||| ||||||||||| ||| ||||||||||| |
Sbjct 609 AGGTCACTTG-AAGGGGATAGTGGGAAGACTCATTACTATCAATGTCATGTTGCTCCCGA 667
Query 636 TGGTAGCTACACATTCAAGGTTCTTTCAGCTCTTCAAGGCCCTCTTCTTGAACACACTGG 695
|||||| |||| |||||||| | | | | |||||| || |||||||
Sbjct 668 TGGTAGTTACAAATTCAAGG--------G-T-T--A------TCTTCTGGAGGACACTGG 709
Query 696 AACACACTTGCACAAGGTCTTGGGTGATGATAATGTTTTAACCGTCAAATTCGCGGA--T 753
||||||| |||||||||| |||||||||||||| ||||||||||||||||||| | |
Sbjct 710 AACACACCTGCACAAGGTTTTGGGTGATGATAACGTTTTAACCGTCAAATTCGATAAAGT 769
Query 754 GTCCAGAAAAGTTCATCAACATATAGCATTGACCATTACTTTACATACAAAGGGATTGCC 813
|| || || | ||| ||| | | ||||| ||||| ||||||||||||||||||
Sbjct 770 GTT-AGGCGAGG--A--AACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCT 824
Query 814 AAGAACGGTATCATGATTGGTTTACGTCGTTATCAATTTTTTG 856
||||| ||||||||| |||| ||||| ||||||| ||||||||
Sbjct 825 AAGAATGGTATCATGGTTGGGTTACGCCGTTATCGATTTTTTG 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118117849745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5