BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19940.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906386 jgi|Araly1|906386|Al_scaffold_0003_3514 1984 0.0
> Ahg906386 jgi|Araly1|906386|Al_scaffold_0003_3514
Length=1206
Score = 1984 bits (1074), Expect = 0.0
Identities = 1162/1206 (96%), Gaps = 0/1206 (0%)
Strand=Plus/Plus
Query 120 ATGAGTACTGCGTCGGCTTTTAGTTCAATCCAAGGATGCTGGTTCAAGGGCGAAAGGAAA 179
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1 ATGAGTACTGCGTCAACTTTTAGTTCAATCCAAGGATGCTGGTTCAAGGGGGAAAGGAGA 60
Query 180 ATTCGTGTAGCGGATAAGCGAGCCAAGAGGCTTACTTTGGGATCCCATGTGGCTTCGCCA 239
||||||||||| |||||||||| ||||| |||| |||||||||||||||||||||| |||
Sbjct 61 ATTCGTGTAGCTGATAAGCGAGTCAAGAAGCTTTCTTTGGGATCCCATGTGGCTTCTCCA 120
Query 240 TCTTCAATGAGCTTCAGAGTTTCAGCTAGTAGTTCTGTTAAACCTGAAAAGGATATTAGG 299
|||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 121 TCTTCACTGAGCTTCAGAGTTTCAGCTAGTAGCTCTGCTAAACCTGAAAAGGATATTCGG 180
Query 300 ATTGGTCTTCTTGGTGCAAGTGGCTACACTGGTGCTGAGATCGTTAGGCTTCTTGCAAAT 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 181 ATTGGTCTTCTTGGTGCAAGTGGCTACACTGGTGCTGAGATCGTCAGGCTTCTAGCAAAC 240
Query 360 CATCCGCATTTCCAGGTCACTTTGATGACTGCTGATAGAAAAGCTGGCCAGTCAATGGAA 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CATCCGCATTTCCAGGTCACTCTGATGACTGCTGATAGAAAAGCTGGCCAGTCAATGGAA 300
Query 420 AGCGTTTTCCCACACCTGAGAGCTCAAAAACTACCTACTTTGGTCTCGGTAAAGGATGCA 479
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 301 AGCGTTTTCCCACACCTGAGAGCTCAAAAACTACCTAGTTTGATCTCGGTAAAGGATGCA 360
Query 480 GATTTTTCTACTGTGGATGCTGTATTCTGCTGTTTACCTCACGGAACAACTCAGGAAATC 539
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 361 GATTTTTCTACTGTGGATGCTGTATTCTGCTGTTTGCCTCACGGAACAACCCAGGAAATC 420
Query 540 ATCAAGGAACTGCCTACTGCATTGAAAATCGTTGATCTTTCAGCGGACTTCCGGTTGCGT 599
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 421 ATCAAGGAACTGCCTACTGCATTAAAAATTGTTGATCTTTCAGCGGACTTCCGGTTGCGT 480
Query 600 AATATTGCAGAATATGAAGAATGGTATGGTCAGCCTCACAAGGCAGTAGAGTTACAGAAA 659
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 481 AATATTGCAGAATATGAAGAATGGTATTGTCAGCCACACAAGGCAGTAGAGTTACAGAAA 540
Query 660 GAAGTTGTGTATGGTCTAACAGAGATACTAAGGGAGGACATAAAAAAGGCACGACTTGTG 719
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGTTGTATATGGTCTAACAGAGATACTAAGGGAGGACATAAAAAAGGCACGACTTGTT 600
Query 720 GCTAACCCAGGCTGTTACCCGACTACGATTCAACTTCCTCTTGTTCCTTTACTAAAGGCA 779
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 601 GCTAACCCAGGCTGTTACCCTACTACGATTCAACTTCCTCTTGTTCCTTTAATAAAGGCA 660
Query 780 AATCTCATCAAACATGAAAACATCATTATCGATGCAAAATCTGGTGTTAGTGGAGCAGGA 839
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 AATCTCATCAAACATGAAAACATTATTATCGATGCAAAATCTGGTGTTAGTGGAGCAGGA 720
Query 840 CGTGGTGCTAAGGAGGCAAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGT 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGTGGTGCTAAGGAGGCGAATCTTTACTCTGAGATAGCTGAAGGCATTTCTTCTTATGGT 780
Query 900 GTCACCCGTCATCGCCATGTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCA 959
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GTCACCCGGCATCGCCATGTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAATCA 840
Query 960 AAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATGATCCGTGGAATGCAATCGACT 1019
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 AAAGTAACTGTCAGTTTTACGCCGCATCTCATGCCAATGATCCGTGGAATGCAATCGACT 900
Query 1020 ATATATGTGGAAATGGCTCCCGGGGTTAGAACCGAAGATTTACACCAGCAATTGAAGACG 1079
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||
Sbjct 901 ATATATGTGGAAATGGCTCCCGGGGTTAGAACCGAAGACTTATACCATCAATTGAGGACG 960
Query 1080 TCTTATGAGGATGAAGAATTTGTCAAAGTGTTGGATGAAGGAGTTGTTCCTCGGACACAC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCTTATGAGGATGAAGAATTTGTCAAAGTGTTGGATGAAGGAGTTGTTCCTCGGACACAC 1020
Query 1140 AACGTTAGAGGATCCAACTATTGTCATATGAGTGTCTTTCCTGATCGAATTCCTGGAAGA 1199
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1021 AACGTTAGAGGATCCAACTATTGTCATATGAGTGTCTTTCCTGATCGAATCCCCGGAAGA 1080
Query 1200 GCTATCATAATCTCAGTGATTGATAATCTTGTGAAAGGAGCTTCGGGACAAGCGTTGCAG 1259
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 1081 GCTATCATAATCTCAGTGATTGATAATCTCGTGAAAGGAGCTTCAGGACAAGCATTGCAG 1140
Query 1260 AATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTTTC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AATCTTAACATAATGTTGGGATATCCCGAAACAACGGGGCTCCTACACCAGCCGCTTTTC 1200
Query 1320 CCTTAA 1325
||||||
Sbjct 1201 CCTTAA 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5