BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19950.2
Length=2617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931395 jgi|Araly1|931395|scaffold_303852.1 2337 0.0
> Ahg931395 jgi|Araly1|931395|scaffold_303852.1
Length=2284
Score = 2337 bits (1265), Expect = 0.0
Identities = 1457/1546 (94%), Gaps = 28/1546 (2%)
Strand=Plus/Plus
Query 197 GTTTCAATTTTGATTCATCAATGGCGTCTTGGCTTAAAGCTGCCGAAGATTTATTTGAGG 256
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4 GTTTCAATTCTGATTCATCAATGGCGTCTTGGCTCAAAGCTGCCGAAGATTTATTTGAGG 63
Query 257 TTGTTGATCGAAGAGCAAAATCAGTGGTTGAAGATCTTTCAGAAGAACAGAAC-GATTTG 315
|||| ||||||||||||||||| ||||||||||| ||||| ||||||||| || ||||||
Sbjct 64 TTGTCGATCGAAGAGCAAAATCTGTGGTTGAAGAGCTTTCGGAAGAACAG-ACTGATTTG 122
Query 316 CAGTTGCCAGCTTCTGGTAGGAAAGGGTCTCAAGGGAAGAGAACAAGTTCAAAGAAAAAG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CAGTTGCCAGCTTCTGGTAGGAAAGGGTCTCAAGGGAAGAGAACAAGTTCAAAGAAAAAG 182
Query 376 GCTCGACAGAAACTTGTAAAAGAAGAATCTTCTAACAAAAGAGATTCTTCTGGTGATCAA 435
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 183 GCTCGACAGAAACTTGTAAAAGAAGAATCTTCTAACAAAAGAGATTTTTCTGGTGATCAA 242
Query 436 TCTGGCCCAGGGGTATCACAGTCAGAGGTTCCTCCATCTAAAAGTTCTGTTTCCACTGAC 495
||||||||||||||||||||||||||||| |||||||| | ||| || ||
Sbjct 243 TCTGGCCCAGGGGTATCACAGTCAGAGGTGCCTCCATC---CA---CTG-----AC-GA- 289
Query 496 GAGACATCTTCTTCAGGGCCTGTCTTGCTGACAAGA-GAGATTCACCCGACTGATGCAGA 554
|| ||||||| |||||||||||||||| ||||| | |||| | | ||||||||||||
Sbjct 290 -AG-CATCTTCATCAGGGCCTGTCTTGCAGACAA-ATGAGA-T-A-AGGACTGATGCAGA 343
Query 555 TGTCCAGAGTGTTCTATCACTTCCACTATCAGTGGCTGATACAAAAAGTGACGATGCTGC 614
|||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 344 TGTCCAGAGTGTTCAATCACTTCCACAATCAGTGGCAGATACAAAAAGTGATGATGCTGC 403
Query 615 TGTTGTA-GCTCAAGAAAGTATTGTGGATGGTGATCGTTCTGAGTCAAAGCATGCTGATG 673
||| ||| | || |||| | ||||||| | |||| | ||||||||||||||||||||
Sbjct 404 TGTGGTAGGTTC-AGAATCTGTTGTGGACGCTGATGGAGCTGAGTCAAAGCATGCTGATA 462
Query 674 GAGATATTCCAAATGATTCTTTGGTGCAACCATCACCATCTTTACCTGACAAAGAAATTG 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GAGATATTCCAAATGATTCTTTGGTGCAACCATCACCATCTTTACCTGACAAAGAAATTG 522
Query 734 AGGTCGTTGTCAGTGAGAACCTGATGGATGCTCCCAAAAATGGCACACAACGAGAGTTAG 793
|||||| ||||||||| |||||| | |||| ||||||||||||| |||||||||||||||
Sbjct 523 AGGTCGCTGTCAGTGAAAACCTGGTTGATGTTCCCAAAAATGGCGCACAACGAGAGTTAG 582
Query 794 ATGATTCTTCAAAAAGAGA-CGTGGAGAATCTGGATTCTGTAGTGCATGCTCCTTCGGTT 852
|||||||||||||||||| | ||||||| ||||| ||||||||||||| ||||||||||
Sbjct 583 TTGATTCTTCAAAAAGAGATC-TGGAGAAACTGGAATCTGTAGTGCATGTTCCTTCGGTT 641
Query 853 AATGAAGGAAATGTGGCTCAAAGCACGGGCGATGAGGTGAAAGTTGGCACTTCAATCAAT 912
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GGTGAAGGGAATGTGGCTCAAAGCACGGGCGATGAGGTGAAAGTTGGCACTTCAATCAAT 701
Query 913 CTGGAGAAAGAACAGGAACCGAAAGTTCCTGTCACCTCAACCAATCTGAAAAGAGAGCAA 972
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 702 CTGGAGAAAGAACAGGAACCGAAAGTTCCTGACACCTCAACCAATTTGAAAAGAGAGCAA 761
Query 973 GATCGTAGAGCTGATACGACTTCCATGAAGATTCAAGATCAACTTGAAGAGGCTCAAGGT 1032
||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| ||
Sbjct 762 GATCGTAGAGCTGATACAACTTCCGTTAAGATTCAAGATCAACTTGAAGAGGCTCAGGGG 821
Query 1033 TTGCTAAAAGCTA-CAGTTTCCACTGGGCAGTCAAAAGAAGCCAGGTTAGCAAGGGTTTG 1091
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TTGCTAAAAGCTACCA-TTTCCACTGGGCAGTCAAAAGAAGCCAGGTTAGCAAGGGTTTG 880
Query 1092 TGCTGGACTTTCGTCCCGTCTTCAAGAAATTAAAGCGGAAAATGCACAGTTGGAAGAGCT 1151
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TGCTGGACTTTCATCCCGTCTTCAAGAAATTAAAGCGGAAAATGCACAGTTGGAAGAGCT 940
Query 1152 TCTCACTGCAGAGCAAGAGCTTACCAAGTCATATGAAGCTAGCATTAGACACTTGCAAAA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 941 TCTCACTGCAGAGCAAGAGCTTACCAAGTCATATGAAGCTAGCATTAGACAGTTGCAAAA 1000
Query 1212 AGATCTGTCAGCTGCTAAAAGTGAAGTGACGAAAGTAGAGTCAAGCATGGTTGAGGCACT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AGATCTGTCAGCTGCTAAAAGTGAAGTGACGAAAGTAGAGTCAAGCATGGTTGAGGCACT 1060
Query 1272 AGCAGCTAAAAACTCAGAGATAGAAACACTTGTCAGCGCAATGGATGCCCTTAAAAATCA 1331
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1061 AGCAGCTAAGAACTCAGAGATAGAAACACTTGTCAGCGCAATGGATGCCCTGAAAAATCA 1120
Query 1332 GGCTGCTCTGAACGAAGGAAAATTGTCGTCTCTCCAGGGAGACATGGAGTCTATTATGAG 1391
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1121 GGCTGCTCTGAACGAAGGAAAATTGTCGTCTCTCCAGGGAGATATGGAGTCTATTTTGAG 1180
Query 1392 AAACAGAGAATTGGCTGAGACTAGGATGATGCAGGCATTGCGGGAGGAGCTTGCCACTAC 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AAACAGAGAATTGGCTGAGACTAGGATGATGCAGGCATTGCGGGAGGAGCTTGCCACTAC 1240
Query 1452 TGAAAGGAGAGCCGAAGAGGAGCGTTCTGCTCATAATGCCACAAAAATGGCTGCCATGGA 1511
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1241 TGAAAGGAGAGCTGAAGAGGAGCGTTCTGCACATAATGCGACAAAAATGGCTGCCATGGA 1300
Query 1512 AAGGGAAAGGGAACTAGAGCACAGGGCTGTGGATGCTTCCACAGCACTTGTTAGAATTCA 1571
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1301 AAGGGAAAGGGAACTAGAGCACAGGGCGGTGGATGCTTCCACAGCACTTGTTAGAATTCA 1360
Query 1572 GAGAATTGCTGATGAAAGGACAGCGAAAGTGGCAGATTTTGAACAGAAGGTGGCATTGCT 1631
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1361 GAGAATTGCTGATGAAAGGACAGCGAAAGTGGCAGATCTTGAACAGAAGGTGGCATTGCT 1420
Query 1632 TGAGGCCGAATGTACATCTCTGAATCAAGAGCTGCAAGATATGGAAGTTCGTGCTCGCAG 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TGAGGCCGAATGTACATCTCTGAATCAAGAGCTGCAAGATATGGAAGTTCGTGCTCGCAG 1480
Query 1692 AGGACAAAAGAAGGCTCCAGATGAAGCAAACCAAGTGATCCAGATT 1737
||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1481 AGGACAAAAGAAGTCCCCAGATGAAGCAAACCAAGTGATCCAGATT 1526
Score = 857 bits (464), Expect = 0.0
Identities = 500/518 (97%), Gaps = 0/518 (0%)
Strand=Plus/Plus
Query 1732 CAGATTCAAGCATGGCAGGACGAAGTGGACCGTGCTCGGCAAGGTCAAAGAGATGCTGAG 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CAGATTCAAGCATGGCAGGACGAAGTGGACCGTGCTCGGCAAGGTCAAAGAGATGCTGAG 1619
Query 1792 GAGAAACTTTCTTTGATGGAGGCTGAAATGCAAAAGTTAAGGGTTGAAATGGCAGCCATG 1851
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1620 GAGAAACTTTCTTCAATGGAGGCTGAAATGCAAAAGTTGAGGGTTGAAATGGCAGCCATG 1679
Query 1852 AAGAGGGATGCAGAACATTACTCACGCCAGGAGCATACAGAGCTGGAGAAACGATACCGT 1911
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 1680 AAGAGGGATGCAGAACATTACTCACGCCAGGAGCACACGGAGCTGGAGAAACGCTACCGT 1739
Query 1912 GAACTAACAGATTTACTGTACTATAAGCAAACACAACTAGAGACTATGGCGAGTGAGAAG 1971
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1740 GAACTAACAGATTTACTGTACTATAAGCAAACGCAACTAGAGACTATGGCGAGTGAGAAG 1799
Query 1972 GCTGCAGCAGAGTTTCAGTTGGAAAAAGAGGTCAAACGTCTTCATGAAGCACAGGTAGAG 2031
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1800 GCTGCAGCGGAGTTTCAGTTGGAGAAAGAGGTCAAACGTCTTCACGAAGCACAGGTAGAG 1859
Query 2032 GTAGAAAAAAGTAGAGTTTCGCGACGCGCATCAGCAACTTGGGAAGAAGATTCTGAGATT 2091
||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1860 GTAGAAAGAAGCAGAGTTTCGCGACGCCCATCAGCAACTTGGGAAGAAGATTCTGAGATT 1919
Query 2092 AAGACACTTGAGCCTCTTCCATTGTATCACAGACACATGGCTACAGCGAGCACACAGTTG 2151
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1920 AAGACACTTGAGCCTCTTCCATTGTATCACCGACACATGGCTACAGCGAGCACACAGTTG 1979
Query 2152 CAGAATGCAGTGAAACTGTTAGACTCAGGAGCTGTAAGGGCCACTAGGTTCCTTTGGCGG 2211
|||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1980 CAGAATGCCGTGAAACTGATAGACTCGGGAGCTGTAAGGGCCACTAGGTTCCTTTGGCGG 2039
Query 2212 TACCCAATAGCACGGATGTTCCTACTTTTTTACCTTGT 2249
||||||||||||||||| ||||||||||||||||||||
Sbjct 2040 TACCCAATAGCACGGATTTTCCTACTTTTTTACCTTGT 2077
Score = 187 bits (101), Expect = 3e-46
Identities = 116/123 (94%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 2248 GTCTTTGTTCATCTCTTCTTGATGTATCTAATACACCGACTCCAGGAGCAAGCCGAGGCC 2307
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2163 GTCTTTGTTCATCTCTTCTTGATGTATCTATTACACCGACTCCAGGAGCAAGCCGAGGCC 2222
Query 2308 CAGGAAGTTGCGGCAATGACCAACAACGTTTTCAGACTATAACAGATTCCATAAGAAAGC 2367
||||||||||| | ||||||||||||||||||||||| |||||||| ||||| |||| ||
Sbjct 2223 CAGGAAGTTGCCGAAATGACCAACAACGTTTTCAGACCATAACAGACTCCATGAGAA-GC 2281
Query 2368 AAC 2370
|||
Sbjct 2282 AAC 2284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98691824795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5