BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19970.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480476 jgi|Araly1|480476|fgenesh2_kg.3__3177__AT2G19970.1 1083 0.0
> Ahg480476 jgi|Araly1|480476|fgenesh2_kg.3__3177__AT2G19970.1
Length=737
Score = 1083 bits (586), Expect = 0.0
Identities = 693/743 (93%), Gaps = 14/743 (2%)
Strand=Plus/Plus
Query 2 TCCAAAACATTTTACAAAACCACAACAAAATG-TCCTCTTTTCGTTATA-CTTTCGTCCT 59
||||||| | || |||||| || ||||||||| | | |||||||||||| | |||||| |
Sbjct 1 TCCAAAAAAATTCACAAAAACATAACAAAATGTTGC-CTTTTCGTTATAGC-TTCGTCGT 58
Query 60 ACTGACATTACTCTCTGTTTTGTTAACTCGAGCGTATGGTCTACCTAGGGTAAGACCAAT 119
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 59 TCTGACATTACTCTCTGTTTTGTTAACTCTAGCCTATGGTCTACCTAGGGTAAGACCAAT 118
Query 120 CAAAGATGTCCAACCGAGAAAAACGCTAAAGGTTCACAACCAGATCCGAGCCGCGGTCGG 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CAAAGATGTCCAACCGAAAAAAACGCTAAAGGTTCACAACCAGATCCGAGCCGCGGTCGG 178
Query 180 GGTGGCTCCACTGAAGTGGAACAAAACCGTAGCGGCCTATGCACAGAAATTTGCAAATAG 239
|||||||||| |||||||||||| ||| |||||||||||||||||||| || ||||||||
Sbjct 179 GGTGGCTCCATTGAAGTGGAACAGAACAGTAGCGGCCTATGCACAGAAGTTCGCAAATAG 238
Query 240 ACAAGCTAAAGCCGGAGTCTGCGACTACAGCTCCATGAGACATTCTGATGGACCTTACGG 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACAAGCCAAAGCCGGAGTCTGCGACTACAGCTCCATGAGACATTCTGATGGACCTTACGG 298
Query 300 CGAGAATATCGCCGCGGGATGGGTCCAACCT-AAGGACCAAATGAGCGGTCCGATAGCGG 358
|||||||||||| |||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct 299 CGAGAATATCGCTGCGGGATGGGTCCAACCTGAAG-ACCAAATGAGCGGTCCGATCGCGG 357
Query 359 CAAAGTATTGGTTGACGGAGAAGCCAAACTACGATCATGCGACCAACAAATGCAAAGATG 418
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 358 CAAAGTATTGGTTGACGGAGAAGCCAAACTACGATTATGCGACCAACAAGTGCAAAGATG 417
Query 419 TTTGCGGACACTACACTCAGATGGTGGCCAATCAATCGTTAAGTCTCGGATGTGGCTCGT 478
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 418 TTTGCGGACACTACACTCAGATGGTGGCCAATCAGTCGTTCAGTCTCGGATGTGGCTCGT 477
Query 479 TCAGGTGTCATGAGAATGAGTTGATTTATATTGTATGTAACTATTATCCTATGCCAGTGG 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 478 TCAGGTGTCATGAGAATGAGTTAATTTATATTGTATGTAACTATTATCCTATGCCAGTGG 537
Query 539 GTGATGAGAATACCCGTCCTTATTGATTATATTGATGCAAAGAAATGATCCATATGGTAA 598
||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 538 GTGATGAGAATACACGTCCTTATTGATTATGTTGATGTGAAGAAATGATCCATATGGTAA 597
Query 599 TGTGATTTGACAATTATTAATATGTTAAGTTACTGATCAATATATATGTATAAGAATATA 658
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 598 TGTGATTTGACAATAATTAATATGTTAAGTTACTGATCCAT-TATATGTATAAGACTATA 656
Query 659 AAACCAAGTTTATGATATACATTGGTTTGTAT-A--AGT-T-GCTGCTGTGAAATGATTC 713
|||||||||||||||| || ||||||||||| | ||| | | ||||||||||| ||||
Sbjct 657 AAACCAAGTTTATGATCTA--TTGGTTTGTATTATTAGTGTTGTTGCTGTGAAATCATTC 714
Query 714 AGAATAAAATGTGATGTTCAATT 736
||||||| |||||||| ||||||
Sbjct 715 AGAATAATATGTGATGGTCAATT 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5