BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G19980.1

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480473 jgi|Araly1|480473|fgenesh2_kg.3__3174__AT2G19980.1         774    0.0  


> Ahg480473 jgi|Araly1|480473|fgenesh2_kg.3__3174__AT2G19980.1
Length=497

 Score =  774 bits (419),  Expect = 0.0
 Identities = 471/497 (95%), Gaps = 0/497 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTTTTTCAGGTTATAGCTTCATCGTACTAACATTATTGTCCATCGTCTTAACTCAA  60
            ||||||||||| |||||||||||| | ||| |||||||||  ||||||||||||||||||
Sbjct  1    ATGTCTTTTTCTGGTTATAGCTTCGTGGTAATAACATTATCCTCCATCGTCTTAACTCAA  60

Query  61   ATCTATGGTTTGAGAAGCTTTAGCCGAATGGACGATCTCCAACCGGCAGAAACACTAGCG  120
            |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  61   ATCTATGGTTTGAGAAACTTTAACCGAATGGACGATCTCCAACCGGAAGAAACACTAGCG  120

Query  121  GTTCACAACCAGATTCGAGCTGCGGACCAAAAACTTGCTGCCCATGCACAGAGGTACGCT  180
             ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct  121  ATTCACAACCAGATTCGAGCCGCGGACGAAAAACTTGCTGCCCATGCACAGAGGTACGCT  180

Query  181  AACGTACGTTCCCAAGACTGCGCCATGAAATATTCCACCGACGGAACGTACGGAGAGAAT  240
            |||||||| ||||||||||||||||||||| |||||||||| |||| |||||| ||||||
Sbjct  181  AACGTACGATCCCAAGACTGCGCCATGAAACATTCCACCGATGGAATGTACGGCGAGAAT  240

Query  241  ATAGCCGCCGGGTGGGTCCAACCTATGGACACCATGAGCGGTCCGATCGCAACAAAGTTT  300
            |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  241  ATAGCCGCTGGGTGGGTCCAACCTATGGACACCATGAGCGGTCCGATCGCGACAAAATTT  300

Query  301  TGGTTTACGGAGAAGCCTTATTACAATTATGCCACCAACAAATGCAGTGAACCGTGTGGG  360
            ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct  301  TGGTTGACGGAGAAGCCTTATTACAATTATGCCACCAACAGATGTAGTGAACCGTGTGGG  360

Query  361  CATTATACTCAGATTGTGGCTAATCAATCGACACACCTTGGTTGTGGTACGGTTAGGTGT  420
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CATTACACTCAGATTGTGGCTAATCAATCGACACACCTTGGTTGTGGTACGGTTAGGTGT  420

Query  421  TTTAAGAATGAGTATGTTTGGGTCGTATGTAACTATGCTCCTAGGCCGATGGGTGATGCT  480
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  421  TTTAAGAATGAGTATGTTTGGGTTGTATGTAACTATGCTCCTAGGCCGATGGGTGATGCC  480

Query  481  AATACTCGTCCGTACTG  497
            |||||||||||||||||
Sbjct  481  AATACTCGTCCGTACTG  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18085749186


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5