BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G19990.1
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480471 jgi|Araly1|480471|fgenesh2_kg.3__3172__AT2G19990.1 985 0.0
> Ahg480471 jgi|Araly1|480471|fgenesh2_kg.3__3172__AT2G19990.1
Length=631
Score = 985 bits (533), Expect = 0.0
Identities = 599/631 (95%), Gaps = 3/631 (0%)
Strand=Plus/Plus
Query 1 CCACCAAAGCAACTTCTATAAATACGTTAGCCAAGAAAATGCTTTCTTTTACGACACAAT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCACCAAAGAAACTTCTATAAATACGTTAGCCAAGAAAATGCTTTCTTTTACGACACAAT 60
Query 61 AAGTTCCAAAACAATTAACCACACAAATACAAAATGAATGAAATGTCGTTCTTTGGTTAT 120
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 61 AAGTTCCAAAACAATTAACCACACAAATACAAAATGAATAAAATGTCCTTCTTTGGTTAT 120
Query 121 AGTTTCATCGTAGTAGCATTATTCTTCGATTTAACTCAAGCCTATCGTCACACTCCCGCT 180
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 AGTTTCATCGTAGTCGCATTATTCTCCGATTTAACTCAAGCCTATCGTCACACTCCCGCT 180
Query 181 CAACCGCCAAAAGCAAACGCAAACGGTGATGTCAAACCGCAAGAAACGCTCGTGGTTCAC 240
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 181 CAACCGCCAAAAGCAAACGCAAATGGTGATGTCAAACCGCAAGAAACGCTCGCGGTTCAT 240
Query 241 AACAAGGCCCGAGCCATGGTCGGAGTCGGACCAATGGTGTGGAACGAAACTCTTGCGACC 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACAATGCCCGAGCCATGGTCGGAGTCGGACCAATGGTGTGGAACGAAACTCTTGCGACT 300
Query 301 TATGCACAGAGCTACGCACATGAACGAGCCAGAGACTGTGCCATGAAGCATTCCTTGGGA 360
|||||||| | ||| ||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 301 TATGCACAAAACTATGCACACGAAAGAGCCAGAGACTGTGCCATGAAGCATTCCTCGGGA 360
Query 361 CCATTCGGCGAGAATCTAGCCGCGGGTTGGGGAACGATGAGCGGTCCGGTAGCAACTGAG 420
||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 361 CCATTCGGCGAAAATCTAGCCGCGGGTTGGGGAACAATGAGCGGTCCGGTTGCGACTGAG 420
Query 421 TATTGGATGACGGAGAAGGAAAATTACGATTATGATAGTAACACgtgtgg---tggtgat 477
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 421 TATTGGATGACGGAGAAGGAAAATTACGATTATGACAGTAACACGTGTGGCGGTGGTGAT 480
Query 478 ggtgtgtgtggACACTACACTCAGATCGTGTGGCGTGACTCGGTTCGACTTGGTTGTGCC 537
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 481 GGTGTGTGTGGACACTACACTCAGATCGTGTGGCGTGACTCGGTTCGAGTCGGTTGTGGC 540
Query 538 TCCGTGAGATGTAAGAATGATGAGTATATTTGGGTGATTTGTAGCTATGATCCTCCGGGG 597
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCGGTGAGGTGTAAGAATGATGAGTATATTTGGGTGATTTGTAGCTATGATCCTCCGGGG 600
Query 598 AATTACATCGGTCAACGTCCATATTAGTGAT 628
|||||||| ||||||||||| ||||| ||||
Sbjct 601 AATTACATAGGTCAACGTCCGTATTAATGAT 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25923583560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5