BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20010.2
Length=3461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931380 jgi|Araly1|931380|scaffold_303837.1 4667 0.0
> Ahg931380 jgi|Araly1|931380|scaffold_303837.1
Length=2899
Score = 4667 bits (2527), Expect = 0.0
Identities = 2772/2892 (96%), Gaps = 10/2892 (0%)
Strand=Plus/Plus
Query 356 GTGAATTCGAAGTGGAAATGGAATCGTTACCATCTCCATTTGGCGATCCAGCTCCTAATT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GTGAATTCGAAGTGGAAATGGAATCGTTACCATCTCCATTTGGCGATCCAGCTCCTAATT 63
Query 416 TATCCAATTCGGAGCTCCGAGAAACTGCTTACGAGATCTTAGTCGCTGCTTGCCGTAGCA 475
|||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 64 TATCTGATTCGGAGCTCCGAGAATCCGCTTACGAGATCTTAGTCGCTGCTTGCCGTAGCA 123
Query 476 CTGGAAGTCGTCCGCTGACTTACATCCCTCAATCGCCGAAATCTGATCGGAGCAACGGTC 535
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 124 CTGGAAGTCGTCCGCTGACTTACATCCCTCAATCGCCCAAATCTGATCGGAGCAACGGTG 183
Query 536 TGACGACGGC-GTCGTTATCTCCGTCTCCGTCGCTTCATAGATCTCTGACTTCTACAGCT 594
|||||||| | || |||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 184 TGACGACGACGGT-GTTAGCTCCGTCACCGTCACTTCATAGATCTCTGACTTCTACAGCT 242
Query 595 GCGAGTAAGGTGAAGAAGGCGTTAGGGATGAAGAAACGAATCGG-AGACGGAGACGGAGG 653
||||||||||||||||| || ||||| ||||||||||||||||| || ||||| ||| |
Sbjct 243 GCGAGTAAGGTGAAGAAAGCTTTAGGTATGAAGAAACGAATCGGCGGA-GGAGAAGGA-G 300
Query 654 AGC-G-GGAGAATCGTCGAGTCAACCGGATCGGAGCAAGAAATCCGTCACGGTGGGTGAG 711
| | | |||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 301 A-CGGCGGAGAATCTTCGGGTCAACCGGATCGGAGCAAGAAATCAGTCACGGTTGGTGAG 359
Query 712 TTGGTTCGGGTACAAATGCGAATCTCGGAGCAGATTGATTCAAGGATTCGTAGAGCTCTT 771
|| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 360 TTAGTTCGGGTACAAATGCGAATTTCGGAGCAGATCGATTCAAGGATTCGAAGAGCTCTT 419
Query 772 CTCAGGATCGCTTCTGGTCAGCTTGGGAGGCGTGTGGAGATGATGGTGCTACCTCTTGAG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 CTCAGGATCGCTTCTGGTCAGCTTGGGAGGCGTGTGGAGATGATGGTGCTACCGCTTGAG 479
Query 832 CTTCTGCAACAGCTTAAAGCTTCAGATTTTCCAGACCAAGAAGAGTATGAATCATGGCAG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTCTGCAACAGCTTAAAGCTTCAGATTTTCCAGACCAAGAAGAGTATGAATCATGGCAG 539
Query 892 AGAAGGAACTTGAAGCTTCTTGAAGCTGGTTTGATATTATATCCTTGTGTGCCGCTAAGT 951
||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||||
Sbjct 540 AGAAGAAACTTGAAGCTTCTTGAAGCCGGTTTGATTTTATATCCTTGTGTGCCGTTAAGT 599
Query 952 AAATCAGATAAATCTGTTCAACAGCTTAAGCAGATTATCCGGTCCGGTCTCGAGAGGCCG 1011
||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 600 AAATCTGATAAATCTGTTCAACAGCTTAAGCAGATTATTCGGTCGGGTATCGAGAGGCCG 659
Query 1012 TTAGATACCGGGAAGATTACGGGGGAGACGCAGAATCTTAGGAGTTTAGTAATGTCTCTT 1071
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 TTAGATACCGGGAAGATCACGGGGGAGACTCAGAATCTTAGGAGTTTAGTAATGTCTCTT 719
Query 1072 GCTAGTCGGCAGAACAACAATGGGATTGGTTCTGAGACTTGTCATTGGGCTGATGGGTTT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCTAGTCGGCAGAACAACAATGGGATTGGTTCTGAGACTTGTCATTGGGCTGATGGGTTT 779
Query 1132 CCACTGAATCTTAGAATCTATCAGATGCTTTTAGAGTCTTGTTTTGATGTGAACGATGAG 1191
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCGCTGAATCTTAGAATCTATCAGATGCTTTTAGAGTCTTGTTTTGATGTGAACGATGAG 839
Query 1192 TTGCTGATTGTTGAAGAGGTAGATGAAGTTTTGGAGCTTATAAAGAAAACATGGCCTGTC 1251
||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 TTGTTGATTGTTGAAGAAGTAGATGAAGTTTTAGAGCTTATAAAGAAAACATGGCCTGTC 899
Query 1252 TTGGGGATAAATCAGATGATTCACAATGTTTGCTTTCTCTGGGTGTTGGTTAATCGGTAT 1311
||||| || |||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 900 TTGGGTATGAATCAGCTGATTCACAATGTTTGCTTTCTTTGGGTGTTGTTTAATCGGTAT 959
Query 1312 GTTTCAACCGGGCAAGTGGAGAATGACTTGCTTGTGGCTGCTCATAACTTGATACTCGAA 1371
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 960 GTTTCAACCGGACAAGTGGAGAATGACTTGCTTGTAGCTGCTCATAACTTGATACTCGAA 1019
Query 1372 ATTGAGAACGACGCAATGGAGACAAATGATCCTGAGTATTCCAAGATCTTGAGTTCTGTT 1431
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 ATTGAGAATGACGCAACGGAGACAAATGATCCTGAGTATTCCAAGATCTCGAGTTCTGTT 1079
Query 1432 TTGAGTTTGGTGATGGATTGGGGTGAGAAGAGACTTCTTGCTTACCATGATACTTTCAAC 1491
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTGAGTTTGGTGATGGATTGGGCTGAGAAGAGACTTCTTGCTTACCATGATACTTTCAAC 1139
Query 1492 ATTGATAACGTTGAGACGCTGGAAACTACGGTTTCTTTGGGGATTTTGGTAGCTAAGGTA 1551
|| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1140 ATCGATAACGTTGAGACACTGGAAACTATGGTTTCTTTGGGGATTTTGGTAGCTAAGGTA 1199
Query 1552 CTAGGTGAAGATATTTCTAGCGAATATAGAAGGAAAAAGAAGCATGTCGATTCAGGGCGT 1611
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1200 CTAGGCGAAGATATTTCTAGCGAGTATAGAAGGAAAAAAAAGCATGTCGATTCAGGGCGT 1259
Query 1612 GATCGAGTTGATACCTATATCAGGTCTTCGTTGCGTATGGC-TTTTCAACAGACAAAGAG 1670
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1260 GATCGAGTCGATACCTATATCAGGTCTTCGTTGCGTATGGCTTTTTC-ACAGACAAAGAG 1318
Query 1671 GATGGTGGAACATAGCAAGAAATCAAAATCCCGGCAGAGCACGAATAATCTTCCTGCTCT 1730
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1319 GATGGTGGAACATAGCAAGAAGTCAAAATCCCGGCAGAACACGAATAATCTTCCTGCTCT 1378
Query 1731 TGCGATTCTTGCAGAGGATATTGGTCATTTAGCTTTTAATGAGAAGGCGATATTTAGTCC 1790
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1379 TGCGATTCTTGCAGAGGATATTGGTCATTTAGCTTTCAACGAGAAGGCGATATTTAGTCC 1438
Query 1791 AATCTTGAAGAATTGGCACCCGCTTGCAGCTGGTGTGGCTGCAGCTACGCTTCATTCGTG 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AATCTTGAAGAATTGGCACCCGCTTGCAGCTGGTGTGGCTGCAGCTACGCTTCATTCGTG 1498
Query 1851 CTATGGTACCGAGTTGAAGAAATTCGTCTCGGGTATTACTGAGTTGACGCCAGATGCTAT 1910
|||||| |||||||||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct 1499 CTATGGAACCGAGTTGAAGAAGTTTGTCTCGGGTATTACCGAGTTGACGCCGGATGCTAT 1558
Query 1911 TAGAGTACTCACTGCTGCAGATAAGCTTGAGAAGGATCTGGTGCAAATTGCTGTACAAGA 1970
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1559 AAGAGTACTCACTGCTGCAGATAAGCTTGAGAAGGATCTGGTGCAGATTGCTGTACAAGA 1618
Query 1971 TGCAGTAGATAGTGAAGATGGTGGAAAATCGGTTATAAGAGAGATGCCTCCTTTTGAAGC 2030
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TGCAGTAGATAGTGAAGATGGCGGAAAATCGGTTATAAGAGAGATGCCTCCTTTTGAAGC 1678
Query 2031 AGAAGTCGTTATTGGTAACCTTGTGAAATCGTGGATCAAGATCCGAGTTGATAGGCTAAA 2090
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1679 GGAAGTCGTTATTGGTAACCTTGTGAAATCGTGGATCAAGACCCGAGTCGATAGGCTAAA 1738
Query 2091 AGAGTGGATCGACCGGAATCTCCAGCAAGAGGTATGGAATCCGAGATCGAATAAACTCGG 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 AGAGTGGATCGACCGGAATCTCCAGCAAGAGGTATGGAATCCGAGATCGAATAAACTCGG 1798
Query 2151 TATCGCTCCTTCTGCTGTGGATGTACTGAGGATGGTAGATGAGACATTGGAAGCGTTTTT 2210
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1799 TATCGCTCCTTCTGCTGTGGATGTACTGAGGATGGTAGATGAGACACTGGAAGCGTTTTT 1858
Query 2211 CTTGTTGCCGATTCTTTTGCATCCAGTTTTACTTCCTGAGCTAACGTCAGGACTAGACAA 2270
|||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1859 CTTGTTGCCGATACTTTTGCATCCAGTTTTACTTCCTGAGCTAACTTCGGGACTCGACAA 1918
Query 2271 GTGTATGCAGCATTATGTATCAAAGGCGAAATCATCCTGCGGCTCGCGGAATACGTTTCT 2330
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1919 GTGTATGCAGCATTATGTATCAAAGGCGAAATCTTCCTGCGGCTCGCGGAATACATTTCT 1978
Query 2331 ACCCGTTTTGCCTGCTTTAACAAGATGCACGGTCGGGTCCAGACTACATGGTGTATTCAA 2390
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 ACCCGCTTTGCCTGCTTTAACAAGATGCACGGTCGGGTCCAGACTACATGGTGTATTCAA 2038
Query 2391 GAAAAAGGAGAAGCCAATGGTAGCTTCTCACAGGAGAAAATCACAGCTGGGGACGGGTAA 2450
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2039 GAAAAAGGAGAAGCCAATGGTAGCTTCTCACAGGAGAAAATCACAGCTGGGGACGAGTAA 2098
Query 2451 TGACTCGGCGGAAATACTTCAGTTCTGTTGCAGGATCAACACTCTGCAGTATATCAGGAC 2510
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2099 TGACTCCGCGGAAATACTTCAGTTCTGTTGCAGGATCAATACTCTGCAGTATATCAGGAC 2158
Query 2511 AGAGATCGAATCATCTGGGAGAAAAACATTGAATCGTCTCCCGGAATCCGAAGTTGCAGC 2570
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2159 AGAGATCGAATCATCTGGGAGAAAAACATTGGATCGTCTCCCGGAATCCGAAGTTGCGGC 2218
Query 2571 TTTGGATGCTAAAGGTAAAATATTTGAACAGTCGATTAGTTATTGCTCGAAAGGAATACA 2630
|||||||| |||||||||||| ||||||||| | ||| ||||||||||||||||||||||
Sbjct 2219 TTTGGATGGTAAAGGTAAAATCTTTGAACAGGCAATTGGTTATTGCTCGAAAGGAATACA 2278
Query 2631 GCAATTGTCTGAAGCAACTGCTTACAAGATCGTCTTCCACGATCTGAGCAATGTTCTCTG 2690
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 2279 GCAATTGTCTGAAGCAACTGCTTACAAGATCGTTTTTCACGATCTGAGCAACGTTCTCTG 2338
Query 2691 GGATGGTCTGTACCTCGGGGAAGTTCCTTCCTCAAGGATTGAGCCGTTTCTTCAAGAGCT 2750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 GGATGGTCTGTACCTCGGGGAAGTTCCTTCCTCAAGGATTGAGCCGTTTCTTCAAGAGCT 2398
Query 2751 CGAACGGTGCCTTGAGATTATCTCCTCATCGGTTCATGACAGAGTCCGAACCAGAGTCAT 2810
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2399 CGAACGGTGCCTTGAGATTATCTCCTCATCGGTTCACGACAGAGTCCGAACCAGAGTCAT 2458
Query 2811 TTCGGACATCATGAGAGCTTCTTTCGACGGGTTCTTATTGGTCCTCCTTGCAGGTGGACC 2870
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 2459 TTCGGACATCATGAGAGCTTCTTTCGACGGGTTCTTATTGGTCCTCCTCGCAGGCGGGCC 2518
Query 2871 ATCGCGTGGCTTCACAATTCAAGACTCTGCTGCCGTAGAAGAGGATTTCAAGTTTCTATG 2930
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2519 ATCGCGTGGCTTCACAATTCAAGACTCTGCTGCCGTAGAGGAGGATTTCAAGTTTCTGTG 2578
Query 2931 CGATCTTTTCTGGTCAAACGGAGACGGATTGCCTTTGGATTTGATCGAGAAGGTTTCGAC 2990
|||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 2579 CGATCTTTTCTGGTCAAATGGAGACGGATTGCCTTTGGATCTAATCGAGAAGGTTTCGAC 2638
Query 2991 GACTGTCAAGAGTATACTTCCGCTGCTGCGCACGGATACAGATTCTTTGATTGAACGGTT 3050
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2639 GACAGTCAAGAGTATACTTCCGCTGCTGCGCACGGATACTGATTCTTTGATTGAACGGTT 2698
Query 3051 TAAAGCAGTGTGTCTGGAGAATCATGGTTCTGACAGAGGGAAGCTTCCGTTACCGCCGAC 3110
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2699 TAAAGCGGTGTGTCTCGAGAATCATGGTTCTGACAGAGGGAAGCTTCCGTTACCTCCGAC 2758
Query 3111 TTCTGGTCCGTGGAGTCCGACAGAACCAAACACACTTTTAAGAGTATTGTGTTACCGTTA 3170
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2759 TTCTGGTCCGTGGAGTCCGACAGAACCAAACACACTTTTAAGAGTATTGTGTTATCGTTA 2818
Query 3171 CGATGAACCTGCGACTAAGTTTCTGAAAAAGACCTATAACTTGCCGAGGAAGCTAACCTG 3230
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2819 TGATGAGCCTGCGACTAAGTTTCTGAAAAAGACTTATAACTTGCCGAGGAAGCTAACCTG 2878
Query 3231 AGAGTGACCTAC 3242
||||||||||||
Sbjct 2879 AGAGTGACCTAC 2890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130689705682
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5