BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20020.1
Length=2285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480467 jgi|Araly1|480467|fgenesh2_kg.3__3168__AT2G20020.1 3452 0.0
> Ahg480467 jgi|Araly1|480467|fgenesh2_kg.3__3168__AT2G20020.1
Length=2237
Score = 3452 bits (1869), Expect = 0.0
Identities = 2119/2241 (95%), Gaps = 12/2241 (1%)
Strand=Plus/Plus
Query 20 CTGTGGATGAGTCTCTCTAAAACCTTGGCTTCCTTCGACTTCTTCTGTTTTCTCCGGCAA 79
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CTGTGGATGAGTCTCTCTAAAACCTTGGCTTCCTCCGACTTCTTCTGTTTTCTCCGGCAA 60
Query 80 TGTCGTTAAAACTCAACACTCCTTTTCCAATTTTCGCGCCATCTCTATTTCCTAATCATA 139
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTCGTTGAAACTCAACACTCCTTTTCCAATTTTCGCGCCATCTCTATTTCCTAATCATA 120
Query 140 ACCCAAGAGCACCCAGCGAGATCCGATTCTCTAGATGGGGCAACGCTAATGCCGAACGGT 199
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 ACCCAAGAGCGCCCAGCGAGATCCGATTCTCTAGATGGGGCAACGCTAATGCAGAACGGT 180
Query 200 TCGAGCAGCGTCGCCGGAGCCAAGAAGAACTCGAGGCTGAGATCCGTCGGGACCGCCGAT 259
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 181 TCGAGCAGCGTCGCCGGAGCCAAGAAGAGCTCGAGGCTGAGATCCGTCGCGACCGCCGAT 240
Query 260 TCGACGCCGCTACTAAAATCGTCCATACCCATGATTCCGAAGCAGCAGCTGCTGAGCCTA 319
|||||||||||||||||||||||||||| || |||||||| || |||||| |||||||||
Sbjct 241 TCGACGCCGCTACTAAAATCGTCCATACACACGATTCCGATGCCGCAGCTTCTGAGCCTA 300
Query 320 AAACGTCACCGTTTAGATCAAGAGGCACTCCTTCACTTCCCTCTGCTCGTTCGATTCCGG 379
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAACGTCGCCGTTTAGATCAAGAGGCACTCCTTCACTTCCCTCTGCTCGTTCGATTCCGG 360
Query 380 GTCGAAGATCCAAATACTCCAAACCCGATTCAGGACCCAATAGACCCAAGAACAAACCTA 439
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 GTCGGAGATCCAAATACTCCAAACCCGATTCAGGACCCAATAAACCCAAGAACAAACCTA 420
Query 440 GAGTACCCGATTCGCCGCCGCAACTAGACGCTAAGCCTGAGGTTAAGCTAAGCGAAGATG 499
||||||||||||||||||||||| |||| || ||||||||||| |||||||| ||||| |
Sbjct 421 GAGTACCCGATTCGCCGCCGCAATTAGATGCAAAGCCTGAGGTCAAGCTAAGTGAAGACG 480
Query 500 GATTAACTTACGTCATCAATGGAGCTCCTTTCGAATTCAAGTACAGTTACACGGAGACGC 559
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATTATCTTACGTCATCAATGGAGCTCCTTTCGAATTCAAGTACAGTTACACGGAGACGC 540
Query 560 CAAAGGTTAAGCCTTTGAAGCTTCGTGAGCCTGCTTACGCGCCTTTTGGACCTACGACTA 619
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 541 CAAAGGTTAAGCCATTGAAGCTTCGTGAGCCTGCTTACGCGCCTTTTGGTCCTACGACGA 600
Query 620 TGGGAAGGCCATGGACTGGTCGTGCTCCGCTTCCTCAGTCGCAGAAGACGCCGAGAGAAT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGGGAAGGCCATGGACTGGTCGTGCTCCGCTTCCTCAGTCGCAGAAGACGCCGAGAGAAT 660
Query 680 TCGATTCTTTTCGATTGCCTCCTGTGGGGAAGAAAGG-GCTGAAGCCGGTGCAGAAACCG 738
|||||||||||||||||||||| | ||||||||||| | |||| |||||||||||||||
Sbjct 661 TCGATTCTTTTCGATTGCCTCCGGAAGGGAAGAAAGGTG-TGAAACCGGTGCAGAAACCG 719
Query 739 GGTCCTTTTCGACCCGGGGTAGGTCCAAGGTATGTTTACTCCAAGGAGGAGATTTTAGGA 798
|||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||
Sbjct 720 GGTCCTTTTCGACCCGGGTTGGGTCCAAGGTATGTTTACACGAAGGAGGAGATTTTAGGA 779
Query 799 GAGCCATTGACAAAGGAAGAGGTCAGAGAGCTGGTTACTTCTTGCTTGAAGACAACAAGG 858
||||||||||| ||||||||| | ||||||||||||||||||||| | ||||||||||||
Sbjct 780 GAGCCATTGACTAAGGAAGAGATTAGAGAGCTGGTTACTTCTTGCCTAAAGACAACAAGG 839
Query 859 CAATTGAATATGGGCAGAGATGGTTTGACGCATAACATGTTGAACAACATACATGATCTA 918
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 CAATTGAATATGGGCAGAGATGGCTTGACGCATAACATGTTGAACAACATACATGATCTA 899
Query 919 TGGAAGCGGCGAAGGGTTTGTAAGATTAAATGCAAAGGAGTTTGTACAGTCGATATGGAT 978
||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||
Sbjct 900 TGGAAGCGGCGAAGGGTGTGTAAGATTAAATGCAAGGGAGTTTGTACAGTTGACATGGAT 959
Query 979 AATGTTTGCGAGCAGTTAGAGGAGAAAATTGGTGGGAAGGTGATATATAGAAGAGGAGGT 1038
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AATGTTTGCGAACAATTAGAGGAGAAAATTGGTGGGAAGGTGATATATAGAAGAGGAGGT 1019
Query 1039 GTGCTTTTCCTATTCCGTGGCAGAAACTATAACCACAGGACAAGACCGCGGTTCCCTCTT 1098
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTGCTTTTCCTATTTCGTGGGAGAAACTATAACCACAGGACAAGACCGCGGTTCCCTCTT 1079
Query 1099 ATGTTGTGGAAGCCTGTAGCACCTGTTTATCCAAGGCTAATTCAACAAGTGCCTGAGGGT 1158
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1080 ATGTTGTGGAAGCCTGTAGCACCTGTTTATCCAAGGCTGATTCAACAAATGCCTGAGGGT 1139
Query 1159 TTAACTCGTCAGGAAGCTACCAATATGCGGAGGAAAGGACGAGAGCTCATGCCCATTTGC 1218
||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||| |||
Sbjct 1140 TTAACTCTTCAGGAAGCTACCGAGATGCGGAGGAAAGGACGAGACCTCATGCCCATATGC 1199
Query 1219 AAGCTAGGGAAGAATGGTGTGTATTGTGATCTTGTGAAAAATGTTAAAGAAGCATTTGAA 1278
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1200 AAGCTAGGGAAGAATGGTGTGTATTGTGACCTTGTGAAAAATGTTAAAGAAGCATTTGAA 1259
Query 1279 GTTTGTGAATTGGTTCGGATCGATTGTCAAGGGATGAAAGGCAGTGATTTTAGGAAAATC 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GTTTGTGAATTGGTTCGGATCGATTGTCAAGGGATGAAAGGCAGTGATTTTAGGAAAATC 1319
Query 1339 GGTGCCAAACTCAAGGATCTTGTTCCATGTGTGCTCGTATCTTTTGAAAACGAGCAGATT 1398
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1320 GGTGCTAAACTCAAGGATCTTGTTCCATGTGTGCTCATATCTTTTGAAAACGAGCAAATT 1379
Query 1399 CTTATCTGGAGAGGACGAGAATGGAAATCGTCTCTCACAACTCCAGATAAAAAGGGTGAT 1458
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1380 CTTATCTGGAGAGGACGGGAATGGAAATCGTCTCTCACAACTCCAGATAAAAAGGATGAT 1439
Query 1459 ATCCTTGAAGATATCGAAGTTGATACTGCCTTGCCAGAAGATGACGAACCATCGGTGTCA 1518
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1440 ATCCTTGAAGATATCGAAGTTGATACTGCCTTGCCGGAAGATGATGAACCATCGGTGTCA 1499
Query 1519 CCAAATCAGAGTCAAACTATGACCCAGAACCCTCCTCTGGATTCTATGGAACTGCAAAAT 1578
|||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1500 CCAAATCAGACTCAAACTGTGACCCAGAGCCCTCCTCTGGATTCTATGGAATTGCAAAAT 1559
Query 1579 GATCCAGATGGTCACGATTTGAGCCCTTCAACTGTAGATTCCTCGGAAATGGAAGGCACA 1638
||||||||||||| |||||||||| ||||||||||||||| ||||| |||||| ||||||
Sbjct 1560 GATCCAGATGGTCCCGATTTGAGCTCTTCAACTGTAGATTTCTCGGCAATGGAGGGCACA 1619
Query 1639 ATCAATTCTTTACAGAGCTGGTCTACAAAAGATGTAACTGAGCCAACGGTAGATAGTTTT 1698
| |||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||| |
Sbjct 1620 AGCAATTCTTTAAAGAGCCCGTCTACAAAAGATCTAACTGAGCCAACGGCAGATAGTTCT 1679
Query 1699 CTTCGAGACCTTGAAGAACCTGAAGACGAACCAGAAACATCGGAAGAGATCAGCAAACAA 1758
||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct 1680 ATTCGAGACCATGAAGAACCTGAACACGAACCAGAAACATCTGAAGAAATCAGCAAACAA 1739
Query 1759 AGCATAGAGAGAGTTCTGATTTTGATGAAACAAGCTGTGGAGAGCGGGACTGCACTTGTG 1818
||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1740 AGCATAGAGAGAGTTCTGAATCTGATGAAACAAGCTGTGGAGAGCGGGACTGCGCTTGTG 1799
Query 1819 TTAGATGCTGCTGATCTGGACGCAGACACAGTCTTTTCAAAAGCTGTTGCCTTTTCGAGT 1878
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 1800 TTAGATGCTACTGATCTGGACGCAGACACAGTCTTCGCAAAAGCTGTCGCCTTTTCGACT 1859
Query 1879 GTAGCTTCACCAGGACCAGTTTTCCAGCATGGCTTGAGAAAACAACCAACGGTTAAGAAG 1938
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1860 GTAGCTTCACCGGGACCAGTTTTCCAGCATGGCCTGAGAAAACAACCAACGGTTAAGAAG 1919
Query 1939 CAGGAAAGCCAAGAATTCGGGTACGGAGACTTGGAGGCAAAATCAAGTAATGTAGTGGTT 1998
|||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1920 CAGGAAAGTCGAGAATTCGGGTACCGAAACTTGGAGGCAAAATCAAGTAATGTAGTGGTT 1979
Query 1999 TCTAGGAATGCTTCCAAATCAAGTAATGTTGTGGTTTTTgggaaaagagaagttgcagag 2058
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1980 TCTAGGAATGCCTCCAAATCAAGTAATGTTGTGGTTTCTGGGAAAAGAGAAGTTGCAGTG 2039
Query 2059 aggggggaaagagaggagaaggaggagggatcgaagaagaaaaTGGACGAGTTTGCTGAA 2118
|| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 2040 AGTGGGGAAAGAGAGGAG--G-AGGAGGGATTGAAGAAGAAAATGGACGAGTTTGCTGAA 2096
Query 2119 GATTACAGAGAAGTGATGCCGCATGGAACATTGAAGGTAGATGAACTAGCTAAACTACTT 2178
||||| | |||||| || || ||||||||||||||| |||||||||||||||||||||||
Sbjct 2097 GATTATAAAGAAGTAATACCACATGGAACATTGAAGCTAGATGAACTAGCTAAACTACTT 2156
Query 2179 GCATAATGAAATT-T-TGT--GT-AT--GTATTTGTTGACTAGTGTATAATGTAGTCTAA 2231
||||||||| ||| | ||| || || ||||||||||| ||||||||||||||||||||
Sbjct 2157 GCATAATGAGATTATCTGTATGTTATCTGTATTTGTTGAGTAGTGTATAATGTAGTCTAA 2216
Query 2232 TCATCATTGTCAAAAGTGTAA 2252
|||||||| ||||||||||||
Sbjct 2217 TCATCATTATCAAAAGTGTAA 2237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86045863455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5