BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G20020.1 Length=2285 Score E Sequences producing significant alignments: (Bits) Value Ahg480467 jgi|Araly1|480467|fgenesh2_kg.3__3168__AT2G20020.1 3452 0.0 > Ahg480467 jgi|Araly1|480467|fgenesh2_kg.3__3168__AT2G20020.1 Length=2237 Score = 3452 bits (1869), Expect = 0.0 Identities = 2119/2241 (95%), Gaps = 12/2241 (1%) Strand=Plus/Plus Query 20 CTGTGGATGAGTCTCTCTAAAACCTTGGCTTCCTTCGACTTCTTCTGTTTTCTCCGGCAA 79 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 CTGTGGATGAGTCTCTCTAAAACCTTGGCTTCCTCCGACTTCTTCTGTTTTCTCCGGCAA 60 Query 80 TGTCGTTAAAACTCAACACTCCTTTTCCAATTTTCGCGCCATCTCTATTTCCTAATCATA 139 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGTCGTTGAAACTCAACACTCCTTTTCCAATTTTCGCGCCATCTCTATTTCCTAATCATA 120 Query 140 ACCCAAGAGCACCCAGCGAGATCCGATTCTCTAGATGGGGCAACGCTAATGCCGAACGGT 199 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 121 ACCCAAGAGCGCCCAGCGAGATCCGATTCTCTAGATGGGGCAACGCTAATGCAGAACGGT 180 Query 200 TCGAGCAGCGTCGCCGGAGCCAAGAAGAACTCGAGGCTGAGATCCGTCGGGACCGCCGAT 259 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 181 TCGAGCAGCGTCGCCGGAGCCAAGAAGAGCTCGAGGCTGAGATCCGTCGCGACCGCCGAT 240 Query 260 TCGACGCCGCTACTAAAATCGTCCATACCCATGATTCCGAAGCAGCAGCTGCTGAGCCTA 319 |||||||||||||||||||||||||||| || |||||||| || |||||| ||||||||| Sbjct 241 TCGACGCCGCTACTAAAATCGTCCATACACACGATTCCGATGCCGCAGCTTCTGAGCCTA 300 Query 320 AAACGTCACCGTTTAGATCAAGAGGCACTCCTTCACTTCCCTCTGCTCGTTCGATTCCGG 379 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AAACGTCGCCGTTTAGATCAAGAGGCACTCCTTCACTTCCCTCTGCTCGTTCGATTCCGG 360 Query 380 GTCGAAGATCCAAATACTCCAAACCCGATTCAGGACCCAATAGACCCAAGAACAAACCTA 439 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 361 GTCGGAGATCCAAATACTCCAAACCCGATTCAGGACCCAATAAACCCAAGAACAAACCTA 420 Query 440 GAGTACCCGATTCGCCGCCGCAACTAGACGCTAAGCCTGAGGTTAAGCTAAGCGAAGATG 499 ||||||||||||||||||||||| |||| || ||||||||||| |||||||| ||||| | Sbjct 421 GAGTACCCGATTCGCCGCCGCAATTAGATGCAAAGCCTGAGGTCAAGCTAAGTGAAGACG 480 Query 500 GATTAACTTACGTCATCAATGGAGCTCCTTTCGAATTCAAGTACAGTTACACGGAGACGC 559 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GATTATCTTACGTCATCAATGGAGCTCCTTTCGAATTCAAGTACAGTTACACGGAGACGC 540 Query 560 CAAAGGTTAAGCCTTTGAAGCTTCGTGAGCCTGCTTACGCGCCTTTTGGACCTACGACTA 619 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 541 CAAAGGTTAAGCCATTGAAGCTTCGTGAGCCTGCTTACGCGCCTTTTGGTCCTACGACGA 600 Query 620 TGGGAAGGCCATGGACTGGTCGTGCTCCGCTTCCTCAGTCGCAGAAGACGCCGAGAGAAT 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGGGAAGGCCATGGACTGGTCGTGCTCCGCTTCCTCAGTCGCAGAAGACGCCGAGAGAAT 660 Query 680 TCGATTCTTTTCGATTGCCTCCTGTGGGGAAGAAAGG-GCTGAAGCCGGTGCAGAAACCG 738 |||||||||||||||||||||| | ||||||||||| | |||| ||||||||||||||| Sbjct 661 TCGATTCTTTTCGATTGCCTCCGGAAGGGAAGAAAGGTG-TGAAACCGGTGCAGAAACCG 719 Query 739 GGTCCTTTTCGACCCGGGGTAGGTCCAAGGTATGTTTACTCCAAGGAGGAGATTTTAGGA 798 |||||||||||||||||| | |||||||||||||||||| | |||||||||||||||||| Sbjct 720 GGTCCTTTTCGACCCGGGTTGGGTCCAAGGTATGTTTACACGAAGGAGGAGATTTTAGGA 779 Query 799 GAGCCATTGACAAAGGAAGAGGTCAGAGAGCTGGTTACTTCTTGCTTGAAGACAACAAGG 858 ||||||||||| ||||||||| | ||||||||||||||||||||| | |||||||||||| Sbjct 780 GAGCCATTGACTAAGGAAGAGATTAGAGAGCTGGTTACTTCTTGCCTAAAGACAACAAGG 839 Query 859 CAATTGAATATGGGCAGAGATGGTTTGACGCATAACATGTTGAACAACATACATGATCTA 918 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 840 CAATTGAATATGGGCAGAGATGGCTTGACGCATAACATGTTGAACAACATACATGATCTA 899 Query 919 TGGAAGCGGCGAAGGGTTTGTAAGATTAAATGCAAAGGAGTTTGTACAGTCGATATGGAT 978 ||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||| Sbjct 900 TGGAAGCGGCGAAGGGTGTGTAAGATTAAATGCAAGGGAGTTTGTACAGTTGACATGGAT 959 Query 979 AATGTTTGCGAGCAGTTAGAGGAGAAAATTGGTGGGAAGGTGATATATAGAAGAGGAGGT 1038 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 AATGTTTGCGAACAATTAGAGGAGAAAATTGGTGGGAAGGTGATATATAGAAGAGGAGGT 1019 Query 1039 GTGCTTTTCCTATTCCGTGGCAGAAACTATAACCACAGGACAAGACCGCGGTTCCCTCTT 1098 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GTGCTTTTCCTATTTCGTGGGAGAAACTATAACCACAGGACAAGACCGCGGTTCCCTCTT 1079 Query 1099 ATGTTGTGGAAGCCTGTAGCACCTGTTTATCCAAGGCTAATTCAACAAGTGCCTGAGGGT 1158 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 1080 ATGTTGTGGAAGCCTGTAGCACCTGTTTATCCAAGGCTGATTCAACAAATGCCTGAGGGT 1139 Query 1159 TTAACTCGTCAGGAAGCTACCAATATGCGGAGGAAAGGACGAGAGCTCATGCCCATTTGC 1218 ||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||| ||| Sbjct 1140 TTAACTCTTCAGGAAGCTACCGAGATGCGGAGGAAAGGACGAGACCTCATGCCCATATGC 1199 Query 1219 AAGCTAGGGAAGAATGGTGTGTATTGTGATCTTGTGAAAAATGTTAAAGAAGCATTTGAA 1278 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1200 AAGCTAGGGAAGAATGGTGTGTATTGTGACCTTGTGAAAAATGTTAAAGAAGCATTTGAA 1259 Query 1279 GTTTGTGAATTGGTTCGGATCGATTGTCAAGGGATGAAAGGCAGTGATTTTAGGAAAATC 1338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 GTTTGTGAATTGGTTCGGATCGATTGTCAAGGGATGAAAGGCAGTGATTTTAGGAAAATC 1319 Query 1339 GGTGCCAAACTCAAGGATCTTGTTCCATGTGTGCTCGTATCTTTTGAAAACGAGCAGATT 1398 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1320 GGTGCTAAACTCAAGGATCTTGTTCCATGTGTGCTCATATCTTTTGAAAACGAGCAAATT 1379 Query 1399 CTTATCTGGAGAGGACGAGAATGGAAATCGTCTCTCACAACTCCAGATAAAAAGGGTGAT 1458 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 1380 CTTATCTGGAGAGGACGGGAATGGAAATCGTCTCTCACAACTCCAGATAAAAAGGATGAT 1439 Query 1459 ATCCTTGAAGATATCGAAGTTGATACTGCCTTGCCAGAAGATGACGAACCATCGGTGTCA 1518 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1440 ATCCTTGAAGATATCGAAGTTGATACTGCCTTGCCGGAAGATGATGAACCATCGGTGTCA 1499 Query 1519 CCAAATCAGAGTCAAACTATGACCCAGAACCCTCCTCTGGATTCTATGGAACTGCAAAAT 1578 |||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||||| Sbjct 1500 CCAAATCAGACTCAAACTGTGACCCAGAGCCCTCCTCTGGATTCTATGGAATTGCAAAAT 1559 Query 1579 GATCCAGATGGTCACGATTTGAGCCCTTCAACTGTAGATTCCTCGGAAATGGAAGGCACA 1638 ||||||||||||| |||||||||| ||||||||||||||| ||||| |||||| |||||| Sbjct 1560 GATCCAGATGGTCCCGATTTGAGCTCTTCAACTGTAGATTTCTCGGCAATGGAGGGCACA 1619 Query 1639 ATCAATTCTTTACAGAGCTGGTCTACAAAAGATGTAACTGAGCCAACGGTAGATAGTTTT 1698 | |||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||| | Sbjct 1620 AGCAATTCTTTAAAGAGCCCGTCTACAAAAGATCTAACTGAGCCAACGGCAGATAGTTCT 1679 Query 1699 CTTCGAGACCTTGAAGAACCTGAAGACGAACCAGAAACATCGGAAGAGATCAGCAAACAA 1758 ||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||| Sbjct 1680 ATTCGAGACCATGAAGAACCTGAACACGAACCAGAAACATCTGAAGAAATCAGCAAACAA 1739 Query 1759 AGCATAGAGAGAGTTCTGATTTTGATGAAACAAGCTGTGGAGAGCGGGACTGCACTTGTG 1818 ||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| Sbjct 1740 AGCATAGAGAGAGTTCTGAATCTGATGAAACAAGCTGTGGAGAGCGGGACTGCGCTTGTG 1799 Query 1819 TTAGATGCTGCTGATCTGGACGCAGACACAGTCTTTTCAAAAGCTGTTGCCTTTTCGAGT 1878 ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| | Sbjct 1800 TTAGATGCTACTGATCTGGACGCAGACACAGTCTTCGCAAAAGCTGTCGCCTTTTCGACT 1859 Query 1879 GTAGCTTCACCAGGACCAGTTTTCCAGCATGGCTTGAGAAAACAACCAACGGTTAAGAAG 1938 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1860 GTAGCTTCACCGGGACCAGTTTTCCAGCATGGCCTGAGAAAACAACCAACGGTTAAGAAG 1919 Query 1939 CAGGAAAGCCAAGAATTCGGGTACGGAGACTTGGAGGCAAAATCAAGTAATGTAGTGGTT 1998 |||||||| | ||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1920 CAGGAAAGTCGAGAATTCGGGTACCGAAACTTGGAGGCAAAATCAAGTAATGTAGTGGTT 1979 Query 1999 TCTAGGAATGCTTCCAAATCAAGTAATGTTGTGGTTTTTgggaaaagagaagttgcagag 2058 ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1980 TCTAGGAATGCCTCCAAATCAAGTAATGTTGTGGTTTCTGGGAAAAGAGAAGTTGCAGTG 2039 Query 2059 aggggggaaagagaggagaaggaggagggatcgaagaagaaaaTGGACGAGTTTGCTGAA 2118 || ||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| Sbjct 2040 AGTGGGGAAAGAGAGGAG--G-AGGAGGGATTGAAGAAGAAAATGGACGAGTTTGCTGAA 2096 Query 2119 GATTACAGAGAAGTGATGCCGCATGGAACATTGAAGGTAGATGAACTAGCTAAACTACTT 2178 ||||| | |||||| || || ||||||||||||||| ||||||||||||||||||||||| Sbjct 2097 GATTATAAAGAAGTAATACCACATGGAACATTGAAGCTAGATGAACTAGCTAAACTACTT 2156 Query 2179 GCATAATGAAATT-T-TGT--GT-AT--GTATTTGTTGACTAGTGTATAATGTAGTCTAA 2231 ||||||||| ||| | ||| || || ||||||||||| |||||||||||||||||||| Sbjct 2157 GCATAATGAGATTATCTGTATGTTATCTGTATTTGTTGAGTAGTGTATAATGTAGTCTAA 2216 Query 2232 TCATCATTGTCAAAAGTGTAA 2252 |||||||| |||||||||||| Sbjct 2217 TCATCATTATCAAAAGTGTAA 2237 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86045863455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5