BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20030.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480466 jgi|Araly1|480466|fgenesh2_kg.3__3167__AT2G20030.1 1685 0.0
> Ahg480466 jgi|Araly1|480466|fgenesh2_kg.3__3167__AT2G20030.1
Length=1197
Score = 1685 bits (912), Expect = 0.0
Identities = 1108/1199 (92%), Gaps = 28/1199 (2%)
Strand=Plus/Plus
Query 1 ATGAATTCACCACAAGAAATCTCCA-----TTC-TCTTCTTC-T--TCATCATCTTCTTA 51
||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||
Sbjct 1 ATGAATTCACCACAAGAAATCTCCATTCTCTTCTTCTTCTTCTTCATCATCATCTTCTTA 60
Query 52 GACTATGTATCTGCTCAA-----T-CTCCTCCTCCTCCTAATCTATACGCAACAAGCGAC 105
|||||||| ||||||||| | |||||||||||||| || |||||||||||||||||
Sbjct 61 GACTATGTCTCTGCTCAATCTCCTCCTCCTCCTCCTCCTGATATATACGCAACAAGCGAC 120
Query 106 CTTTTCAAGCCAAGCTTAGCTATCATCACCGGAGTTTTCTCCATCGTCTTCACTCTCACC 165
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CTCTTCAAGCCAAGCTTAGCCATCATCACCGGAGTTTTCTCCATCGTCTTCACTCTTACC 180
Query 166 TTTGTTCTCCTCGTCTACGCGAAATGCTTCCACAATGACCTCCGATCAGAGACCGACAGT 225
||||||||||| |||||||| |||||||||||||| || |||||||||||||| || ||
Sbjct 181 TTTGTTCTCCTTGTCTACGCCAAATGCTTCCACAACGATCTCCGATCAGAGACTGATGGT 240
Query 226 GATGGAGAAAGAATACGACATGATCGTCTCTGGCAAGGACT-TTTCAATCGGTCTTCAAG 284
|||||||||| || |||||| |||||||||||||||||||| ||| ||||| ||||||||
Sbjct 241 GATGGAGAAACAAGACGACACGATCGTCTCTGGCAAGGACTCTTT-AATCGATCTTCAAG 299
Query 285 ATTCTCTGGTCTTGACAAGAAAGCAATCGAATCTCTTCCCTTTTTCAGATTCTCTGCTTT 344
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 300 ATTCTCGGGTCTTGACAAGAAAGCAATTGAATCTCTTCCCTTTTTCAGATTCGCTGCTTT 359
Query 345 GAAAGGATTGAAACAAGGGCTTGAATGTTCTGTTTGTTTGTCTAAATTCGAAGATGTTGA 404
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 GAAAGGATTGAAACAAGGGCTTGAATGTTCTGTTTGTTTGTCTAAATTTGAAGATGTTGA 419
Query 405 GATTCTTAGGCTTTTGCCTAAATGCAGACACGCTTTTCATATTGGTTGTATTGACCAGTG 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATTCTTAGGCTTTTGCCTAAATGCAGACACGCTTTTCATATTGGTTGTATTGACCAGTG 479
Query 465 GCTTGAGCAGCACGCTACGTGTCCTTTGTGTAGAAACAGAGTCAATATTGAAGACGACCT 524
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 480 GCTTGAGCAGCACGCTACGTGTCCTTTGTGTAGAAACAGAGTCAATGTTGAAGACGATCT 539
Query 525 CTCTGTGTTGGGTAATAGCAGCACTAGTCTTAGGATCTTGAACCAATCTGAGACAAGAGA 584
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 540 CTCTGTTTTGGGTAATAGCAGCAGTAGTCTTAGGATCATGAACCAATCTGAGACAAGAGA 599
Query 585 AGAAGACTCGAGGTTGGAGATTTACATTGAACGCGAAGAAGGAACTAATGACGGGTCATC 644
||||||||||||||| ||||| || || ||||||||||||||||||| ||||||||| ||
Sbjct 600 AGAAGACTCGAGGTTAGAGATATATATCGAACGCGAAGAAGGAACTAGTGACGGGTCTTC 659
Query 645 AAGATTCAGCAGTTTCCGAAAGATTCTAAAGAAATCGTTGTTGCTTGAGCGAGAAGGAAA 704
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TAGATTCAGCAGTTTCCGGAAGATTCTAAAGAAATCGTTGTTGCTTGAGCGAGAAGGAAA 719
Query 705 TGAGAACATCGATGAGAAGAAACTTATGCACAAGTTCAATCACAGGATCGTTGTTTCGGA 764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGAGAACATCGATGAGAAGAAACTTATGCACAAGTTCAATCACAGGATCGTTGTTTCGGA 779
Query 765 TG-CTGTGTTTAAGAACCGCTGGAGTAATATCACTTCATCTGATTTGACGTTTTTGACAT 823
|| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 780 TGTC-GTGTTTAAGAACCGTTGGAGTAATGTCACTTCATCTGATTTGACGTTTTTGACAT 838
Query 824 CAGAAATGCTGAATTCGGTGTCAAGCGACAGATTTTCGTCGGTGGATCGAGTGCATAGAG 883
| ||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||
Sbjct 839 CTGAAATGCTGAATTCGTTGTCAAGCGACAGATTCTCGTCGATGGATCGAGTACATAGAG 898
Query 884 GTAACTTGCGGGACAAGGAAGATATGGAAATGAAAAGAATGTTGATTAAGCACAAAGACT 943
|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 899 GTAACTTGCGGGACAAGGAAGATATGGAAATGAAGAGAATGTTGAAGAAGAACAAAGACA 958
Query 944 CATCCAGAAGAACGGTTTCTGAGATCACGACTGTTTCAAGAGAAAAGGCGGTTGGAGGAA 1003
|||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 959 CATCCAGAAGAACGGTGTCTGAGATCATGACTGTTTCAAGAGAAAACGCGGTTGGAGGAA 1018
Query 1004 GCTACAGAGGTTCAACCGC-G-T-CCACTTC---G-C--AGAATTATGCCGTTACTGCGA 1054
||||||| ||||||||||| | | || | || | | |||||||||| |||||||||
Sbjct 1019 GCTACAGCGGTTCAACCGCTGCTACCGCATCCACGTCCCAGAATTATGCTATTACTGCGA 1078
Query 1055 CCACGGAAGAAAGAAGACGGCGGTTATGGCTGCCGATCGCTAGAAGAACGGCTCAGTGGT 1114
| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1079 CGACGGAGGAAAGAAGACGGCGGTTATGGTTGCCGATTGCTAGAAGAACGGCTCAGTGGT 1138
Query 1115 TTGTTAACAGAGAGAAAAGTAATGACCTAAACACGACACGCCAAAATCTTAATGTATAG 1173
|||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1139 TTGTTAACCGAGAGAAAAGGAATGAACTCAACACGACACGCCAAAATCTTAATGTATAG 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5