BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G20060.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931375 jgi|Araly1|931375|scaffold_303832.1 1463 0.0
> Ahg931375 jgi|Araly1|931375|scaffold_303832.1
Length=940
Score = 1463 bits (792), Expect = 0.0
Identities = 877/917 (96%), Gaps = 9/917 (1%)
Strand=Plus/Plus
Query 109 TCAGAGATTATGGCTGCTTCAATTTCAAGAAGGATTTTTCGCACTTTTGGATCCTTTTCA 168
|||||||| |||||||||||||| |||| |||||||||||||||||||||| |
Sbjct 17 TCAGAGATAATGGCTGCTTCAATCTCAACAAGGATTTTTCGCACTTTTGGA------T-- 68
Query 169 GCTCTAGGACGTTCCTCTTCACCAAATTTGTCTGCGAATACATCTGGAAATGGTTTAGCT 228
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 69 -CTCTAGGACGTTGCTCTTCACCAAATTTGTCGGCGAATACATCTGGAAATGGTTTATCT 127
Query 229 TCTCTTACTAATGATCTAAAGTATGGAATGGCTTTACTTTCCAACCGAAAGCTCTCCACT 288
||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TCTCTAACTAGTGATCTCAAGTATGGAATGGCTTTACTTTCCAACCGAAAGCTCTCCACT 187
Query 289 TCTATTTTGACTCCTGATGATTCATTTCCTTCTGATTTACTTACCAAAAAGACTGTGCTT 348
||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 188 TCTATTTTGACTCCTGATGATACATTTCCTTCTGATTTACTTACGAAAAAGACCGTGCTT 247
Query 349 ACACCAGACCGAACCATAGGACAATATCAAGACTTGGTCATTCCAGTGACTAATTTTCAG 408
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 248 ACACCAGACCGAACCATAGGACAATATCAAGACTTGGTCATTCCGGTGACAAATTTTCAG 307
Query 409 AACGAGGAAAAGGGTTTCATGGTTTTAGCAGGTGATGTCTTTGATGTTCCAATAAGGAAA 468
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 308 AACGAGGAGAAGGGTTTCATGGTTTTAGCAGGGGATGTCTTTGATGTTCCAATAAGGAAA 367
Query 469 GATATCATTCACAATGTCGTGCGATGGCAGCTTGCGAAACGCCAGCAGGGAACTCATTCG 528
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 368 GATATCATTCACAATGTCGTGCGATGGCAGCTTGCAAAACGCCAGCAGGGAACTCATTCG 427
Query 529 ACCAAAACGTTAAGTGAGGTTAGTGGAACTGGTAGAAAGCCATGGAATCAGAAGGGTACA 588
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 ACCAAAACATTGAGTGAAGTTAGTGGAACTGGTAGAAAGCCATGGAATCAGAAGGGTACA 487
Query 589 GGTCGAGCTAGACATGGTACACTACGTGGTCCGCAGTTCCGAGGTGGTTGTGTAATGCAT 648
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 488 GGTCGAGCTAGACATGGTACACTGCGTGGTCCGCAGTTCCGAGGTGGTTGTGTAATGCAT 547
Query 649 GGACCCAAACCAAGAAGCCATGCCATAAAAATGAATAAGCAGGTTCGACGGCTTGGACTG 708
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 548 GGACCCAAACCGAGAAGCCATGCGATAAAGATGAATAAGCAGGTTCGACGGCTTGGACTG 607
Query 709 AAAATAGCATTGACAGCTCGAGCCGCAGAAGGAAAACTCCTCGTGTTTGATGATTTGGGA 768
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 608 AAAATAGCATTGACAGCTCGAGCCGCAGAAGGAAAACTCCTCGTGTTCGATGATTTGGCA 667
Query 769 TTGCCTACGCATAAAACAAAGAACATTGTGAACTATTACAACCAAATGGAGAACACAAAG 828
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 668 TTGCCTACGCATAAAACAAAGAACATTGTGAATTATTACAATCAAATGGAGAACACAAAG 727
Query 829 AAAGTCCTTGTTGTAGAAGGTGGTCCTATTGATGAAAAGCTGAAGCTAGCCACCCAAAAT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 AAAGTCCTTGTTGTAGAAGGTGGTCCTATTGATGAAAAGCTGAAGCTAGCCACCCAAAAT 787
Query 889 CTACACTATGTCAACATAATTCCATCAATAGGGCTAAATGTTTACAGCATTCTGCTACAC 948
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CTACACTATGTCAACGTAATTCCATCAATAGGGCTAAATGTTTACAGCATTCTGCTACAC 847
Query 949 GATACGCTTCTGATGTCCCGTGATGCTGTGAATAAGATCGTTGAGCGTATGCACACTCCT 1008
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 848 GATACGCTTGTGATGTCCCGTGATGCTGTGAATAAGATCGTTGAGCGTATGAACACTCCT 907
Query 1009 ATTAACCGTTGAAGAGA 1025
|||||||||||||||||
Sbjct 908 ATTAACCGTTGAAGAGA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5